CX301914

Overview
NameCX301914
Unique NameCX301914
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length433
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301914 vs. ExPASy Swiss-Prot
Match: MAOX_VITVI (NADP-dependent malic enzyme OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.321e-13
Identity = 34/55 (61.82%), Postives = 40/55 (72.73%), Query Frame = 2
Query:   23 VYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 187
            +YPPFSNIR              YELG+ATRLP+P+NLVK AESCMY+PVYR+YR
Sbjct:  537 IYPPFSNIRKISAHIAANVAAKAYELGLATRLPQPENLVKYAESCMYSPVYRSYR 591          
BLAST of CX301914 vs. ExPASy Swiss-Prot
Match: MAOX_POPTR (NADP-dependent malic enzyme OS=Populus trichocarpa PE=2 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 3.351e-12
Identity = 33/55 (60.00%), Postives = 37/55 (67.27%), Query Frame = 2
Query:   23 VYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 187
            +YPP SNIR              YELG+ATRLPRP+NLVK AESCMY+P YR YR
Sbjct:  537 IYPPLSNIRKISVQIAANVAAKAYELGLATRLPRPENLVKHAESCMYSPAYRYYR 591          
BLAST of CX301914 vs. ExPASy Swiss-Prot
Match: MAOC_FLAPR (NADP-dependent malic enzyme, chloroplastic OS=Flaveria pringlei GN=MODA PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.751e-12
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 2
Query:   23 VYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 187
            +YPPF+NIR              YELG+A+RLP+P+NLV  AESCMY+P YRNYR
Sbjct:  593 IYPPFTNIRKISAHIAAKVAAKAYELGLASRLPQPENLVAYAESCMYSPKYRNYR 647          
BLAST of CX301914 vs. ExPASy Swiss-Prot
Match: MAOC_ORYSJ (NADP-dependent malic enzyme, chloroplastic OS=Oryza sativa subsp. japonica GN=ME6 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.273e-11
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 2
Query:   23 VYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 187
            ++PPF+NIR              YELG+ATRLP+P++L K AESCMYTPVYR+YR
Sbjct:  585 IFPPFTNIRKISARIAASVAAKAYELGLATRLPQPRDLEKYAESCMYTPVYRSYR 639          
BLAST of CX301914 vs. ExPASy Swiss-Prot
Match: MAOC_MAIZE (NADP-dependent malic enzyme, chloroplastic OS=Zea mays GN=MOD1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.663e-11
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 2
Query:   23 VYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 187
            ++PPF++IR              YELG+ATRLP P +LVK AE+CMYTPVYRNYR
Sbjct:  582 IFPPFTSIRKISAHIAAAVAGKAYELGLATRLPPPSDLVKYAENCMYTPVYRNYR 636          
The following BLAST results are available for this feature:
BLAST of CX301914 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
MAOX_VITVI2.321e-1361.82NADP-dependent malic enzyme OS=Vitis vinifera PE=2... [more]
MAOX_POPTR3.351e-1260.00NADP-dependent malic enzyme OS=Populus trichocarpa... [more]
MAOC_FLAPR9.751e-1256.36NADP-dependent malic enzyme, chloroplastic OS=Flav... [more]
MAOC_ORYSJ1.273e-1156.36NADP-dependent malic enzyme, chloroplastic OS=Oryz... [more]
MAOC_MAIZE1.663e-1156.36NADP-dependent malic enzyme, chloroplastic OS=Zea ... [more]
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Properties
Property NameValue
Genbank descriptionC08015A11SK PhyRootSw1 Citrus sinensis cDNA clone C08015A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301914 ID=CX301914; Name=CX301914; organism=Citrus sinensis; type=EST; length=433bp
CTCGTGCCGAATTCGGCACGAGGTCTACCCACCATTTTCTAATATTAGAA
AAATTTCAGCCAATATAGCTGCTAATGTTGCTGCTAAGGCATATGAACTA
GGCGTGGCTACGCGTCTCCCTCGACCTCAGAATCTAGTGAAGTGCGCTGA
AAGTTGCATGTATACCCCTGTCTACCGAAACTATCGTTAAATGTTCTGCC
AAAATTTCTGTCTCCGCTGAGTGTCTTTAAGCAAAAATAATGTCAAATAA
CTTGTTTTGGTGTGTTATGGTGGCTTTTGTACTTGTGTAAGTATTGCTGT
ATATGTGTACTTATCAAATGAAGGTGTTGGACCACTGCCTACATGGTTGA
AGAATATTCTTCATGATACTCGTGATATTTTTACTGCGGTCTAATTATTT
AATCTTGCATTGCTTAAAAAAAAAAAAAAAAAA
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