EY716926

Overview
NameEY716926
Unique NameEY716926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length881
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY716926 vs. ExPASy Swiss-Prot
Match: TTC37_XENLA (Tetratricopeptide repeat protein 37 OS=Xenopus laevis GN=ttc37 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.702e-24
Identity = 70/221 (31.67%), Postives = 115/221 (52.04%), Query Frame = 1
Query:  148 LQLEDSLEANPDDPSLHLDLGLHLW----ENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSP--RAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRSYPTSPHLWGTLGLAYHRLGMFSAAIKSYGRAIELDETSIFPLL*NGNIFLMAGNFTKGV-EHVQLALK 789
            + L+ +LE  P++   H  LGL+ W    E    K KA   F+ AAK++P  + AF YLGHYY+  + D  RA  CY++A  L   D  +G A  +L    G   + + +    ++++    A WA+ R G   L   + S++V  L  A+R+ P   + W  LG AY   G ++ A+KS+ +A EL+  SI+ +    +I  + G + + V E+ Q+ +K
Sbjct:  441 ISLQYALERKPENAVYHYYLGLNYWFMSKETRRDKTKAVTQFLKAAKMDPFMSRAFYYLGHYYSEVAGDKSRARGCYKKAFELDDSDGEAGAAAVDLSMELGDMDVALAILTSVTERADAGTAKWAWLRRGLFYLRVGQHSKSVSDLHAALRADPKDSNCWECLGEAYLSRGGYTTALKSFMKASELNPDSIYSVYKIASIKQILGTYKEAVNEYQQILMK 661          
BLAST of EY716926 vs. ExPASy Swiss-Prot
Match: TTC37_HUMAN (Tetratricopeptide repeat protein 37 OS=Homo sapiens GN=TTC37 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.549e-21
Identity = 69/215 (32.09%), Postives = 105/215 (48.84%), Query Frame = 1
Query:  163 SLEANPDDPSLHLDLGLHLW----ENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSP--RAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRSYPTSPHLWGTLGLAYHRLGMFSAAIKSYGRAIELDETSIFPLL*NGNIFLMAGNFTKGVEHVQLALK 789
            +LE + +    H  LGL  W    E  + K KA  HF+ AA+L+      F YLGHYY     D  RA  CY++A  L   D+ SG A  +L        + + +    + K+    A WA+ R G   L   + S+AV  LQ A+R+ P   + W +LG AY   G ++ A+KS+ +A EL+  SI+ +     I  + G + + V   Q+ +K
Sbjct:  446 ALEKDTEVAEYHYQLGLTYWFMGEETRKDKTKALTHFLKAARLDTYMGKVFCYLGHYYRDVVGDKNRARGCYRKAFELDDTDAESGAAAVDLSVELEDMEMALAILTTVTQKASAGTAKWAWLRRGLYYLKAGQHSQAVADLQAALRADPKDFNCWESLGEAYLSRGGYTTALKSFTKASELNPESIYSVFKVAAIQQILGKYKEAVAQYQMIIK 660          
BLAST of EY716926 vs. ExPASy Swiss-Prot
Match: SKI3_SCHPO (Superkiller protein 3 OS=Schizosaccharomyces pombe GN=ski3 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.006e-12
Identity = 50/158 (31.65%), Postives = 74/158 (46.84%), Query Frame = 1
Query:  241 EKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAF-------WAFRRLGYLQLHHKKWSEAVQSLQHAIRSYPTSPHLWGTLGLAYHRLGMFSAAIKSYGRAIELD 693
            E +   FV + + +P  A A+  LG YY R   D  RA KC+Q+A  L      + EAL +      +  L  V+ R   + S           W    LG L+L+ K + +A+   Q A+R  P   + W  LG AY R G + +A+K++ RA  LD
Sbjct:  558 EDSFSAFVSSLRKDPNYAPAYTSLGLYY-RDIHDMVRATKCFQKAFELDASQVEAAEALAKTFAEANEWELVEVISRRVLNTSENDLKRKKKFNWHHTSLGVLELNAKNFHKAIVHFQSALRISPKDTNAWSGLGEAYARSGRYVSALKAFNRASILD 714          
The following BLAST results are available for this feature:
BLAST of EY716926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TTC37_XENLA9.702e-2431.67Tetratricopeptide repeat protein 37 OS=Xenopus lae... [more]
TTC37_HUMAN1.549e-2132.09Tetratricopeptide repeat protein 37 OS=Homo sapien... [more]
SKI3_SCHPO1.006e-1231.65Superkiller protein 3 OS=Schizosaccharomyces pombe... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-073-B03-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY716926 ID=EY716926; Name=EY716926; organism=Citrus sinensis; type=EST; length=881bp
CCACGCGTCCGGTCATCTCTTTTGATTTCTTTTTTTCGTTTTCCATAAAA
TTCTTCTTGTAATTTTCTTTATGTTACGAGATGCATGAAATGACGAAGGG
CTTTGTAATTTTTCTTGTTTCAGGATGACGAAAAGGGAGCACTTTTATTG
CAACTGGAGGATTCCTTAGAAGCCAATCCTGATGACCCCTCCCTCCATTT
GGATCTCGGCTTGCACTTGTGGGAGAACTCAGAATCGAAGGAAAAAGCAG
CTGAACATTTTGTAATAGCAGCCAAATTGAACCCTCAAAATGCAGTTGCT
TTCCGATATTTGGGGCATTATTACACCAGATTTTCTATTGATACCCAAAG
AGCTATCAAGTGTTACCAAAGAGCTGTCTCTCTCAGTCCCGATGATTCTG
TTTCTGGGGAAGCTTTATGTGAATTGTTGGAGCATGGAGGAAAGGAGAGC
TTGGAAGTTGTCGTGTGTAGGGAGGCCTCAGACAAGTCTCCAAGGGCTTT
CTGGGCATTTCGTCGCCTGGGTTATCTGCAATTGCATCACAAGAAATGGT
CAGAAGCTGTCCAGAGTCTTCAGCATGCCATACGAAGCTATCCAACCTCT
CCTCATCTCTGGGGAACTCTTGGTCTTGCTTACCACCGGCTTGGCATGTT
TAGTGCTGCTATTAAGTCCTATGGGCGAGCCATTGAATTGGATGAAACCA
GTATCTTTCCTCTGCTTTGAAATGGAAACATCTTTTTGATGGCTGGTAAT
TTCACAAAGGGAGTTGAGCATGTTCAGCTAGCTCTCAAAATTTCTCTNNA
AATGGGTCTGCCCCCTAGGGCCTTCCTTCGGGTTGCTTGGGTTACCCAAC
AAAGCATCATTCTGGGTGCCTTCAGAGGGAG
back to top