CX301796

Overview
NameCX301796
Unique NameCX301796
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301796 vs. ExPASy Swiss-Prot
Match: EF1A_EUGGR (Elongation factor 1-alpha OS=Euglena gracilis GN=TEF PE=2 SV=1)

HSP 1 Score: 371.318 bits (952), Expect = 2.712e-102
Identity = 179/232 (77.16%), Postives = 199/232 (85.78%), Query Frame = 1
Query:    1 LAYTLGVKQMIVGVNKMDDKTVGYKQDRFEEIKTEVSNFIKKIGYNPTNVPFVPISGWNGDNMLEASPNMPWWKGPTLIGALDSMEPPVRPAEKPLRIPLQDVYKIGGIGTVPVGRVETGTLKPGMVVTFAPCNLTTEVKSVEMHHEQLQAAVPGDNVGFNVKNVSIKDIRRGYVASDSTNDPANEAEFFNAQVIILNHPGQIHAGYSPVVDCHTAHIACRWKENCLQIDRR 696
            LAYTLGVKQMIV  NK DDKTV Y Q R+EEIK EVS ++KK+GYNP  VPF+PISGWNGDNM+EAS NM W+KG TLIGALD++EPP RP++KPLR+PLQDVYKIGGIGTVPVGRVETG LKPG VVTFAP NLTTEVKSVEMHHE L  AVPGDNVGFNVKNVS+KDIRRGYVAS++ NDPA EA  F AQVIILNHPGQI  GY+PV+DCHT HIAC++     +IDRR
Sbjct:  139 LAYTLGVKQMIVATNKFDDKTVKYSQARYEEIKKEVSGYLKKVGYNPEKVPFIPISGWNGDNMIEASENMGWYKGLTLIGALDNLEPPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGDVVTFAPNNLTTEVKSVEMHHEALTEAVPGDNVGFNVKNVSVKDIRRGYVASNAKNDPAKEAADFTAQVIILNHPGQIGNGYAPVLDCHTCHIACKFATIQTKIDRR 370          
BLAST of CX301796 vs. ExPASy Swiss-Prot
Match: EF1A_DICDI (Elongation factor 1-alpha OS=Dictyostelium discoideum GN=eef1a1 PE=1 SV=2)

HSP 1 Score: 359.377 bits (921), Expect = 1.066e-98
Identity = 173/232 (74.57%), Postives = 195/232 (84.05%), Query Frame = 1
Query:    1 LAYTLGVKQMIVGVNKMDDKTVGYKQDRFEEIKTEVSNFIKKIGYNPTNVPFVPISGWNGDNMLEASPNMPWWKGPTLIGALDSMEPPVRPAEKPLRIPLQDVYKIGGIGTVPVGRVETGTLKPGMVVTFAPCNLTTEVKSVEMHHEQLQAAVPGDNVGFNVKNVSIKDIRRGYVASDSTNDPANEAEFFNAQVIILNHPGQIHAGYSPVVDCHTAHIACRWKENCLQIDRR 696
            LAYTLGVKQMIV +NKMD+K+  Y Q R++EI  EVS+FIKKIGYNP  V FVPISGWNGDNMLE S  M W+KGPTL+ ALD++  P RP +KPLRIPLQDVYKIGGIGTVPVGRVETG +KPGMVVTFAP  L+TEVKSVEMHHEQL  A PGDNVGFNVKNVS+K+I+RG VA DS NDP  E E F AQVI+LNHPGQIHAGYSPV+DCHTAHIAC++ E   ++DRR
Sbjct:  139 LAYTLGVKQMIVAINKMDEKSTNYSQARYDEIVKEVSSFIKKIGYNPEKVAFVPISGWNGDNMLERSDKMEWYKGPTLLEALDAIVEPKRPHDKPLRIPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPAGLSTEVKSVEMHHEQLPEARPGDNVGFNVKNVSVKEIKRGMVAGDSKNDPPQETEKFVAQVIVLNHPGQIHAGYSPVLDCHTAHIACKFTEIVDKVDRR 370          
BLAST of CX301796 vs. ExPASy Swiss-Prot
Match: EF1A0_XENLA (Elongation factor 1-alpha, somatic form OS=Xenopus laevis GN=eef1as PE=2 SV=1)

HSP 1 Score: 353.214 bits (905), Expect = 7.642e-97
Identity = 176/244 (72.13%), Postives = 194/244 (79.51%), Query Frame = 1
Query:    1 LAYTLGVKQMIVGVNKMDDKTVGYKQDRFEEIKTEVSNFIKKIGYNPTNVPFVPISGWNGDNMLEASPNMPWWKG------------PTLIGALDSMEPPVRPAEKPLRIPLQDVYKIGGIGTVPVGRVETGTLKPGMVVTFAPCNLTTEVKSVEMHHEQLQAAVPGDNVGFNVKNVSIKDIRRGYVASDSTNDPANEAEFFNAQVIILNHPGQIHAGYSPVVDCHTAHIACRWKENCLQIDRR 696
            LAYTLGVKQ+IVG+NKMD     Y Q R+EEI  EVS +IKKIGYNP  V FVPISGWNGDNMLE SPNMPW+KG             TL+ ALD + PP RP +KPLR+PLQDVYKIGGIGTVPVGRVETG +KPGMVVTFAP N+TTEVKSVEMHHE L  AVPGDNVGFNVKNVS+KD+RRG VA DS NDP  EA  F AQVIILNHPGQI AGY+PV+DCHTAHIAC++ E   +IDRR
Sbjct:  139 LAYTLGVKQLIVGINKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSPNMPWFKGWKITRKEGSGSGTTLLEALDCILPPSRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPVNVTTEVKSVEMHHEALTEAVPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAGSFTAQVIILNHPGQIGAGYAPVLDCHTAHIACKFAELKEKIDRR 382          
BLAST of CX301796 vs. ExPASy Swiss-Prot
Match: EF1A_TRYBB (Elongation factor 1-alpha OS=Trypanosoma brucei brucei GN=TEF1 PE=1 SV=3)

HSP 1 Score: 352.443 bits (903), Expect = 1.304e-96
Identity = 168/232 (72.41%), Postives = 194/232 (83.62%), Query Frame = 1
Query:    1 LAYTLGVKQMIVGVNKMDDKTVGYKQDRFEEIKTEVSNFIKKIGYNPTNVPFVPISGWNGDNMLEASPNMPWWKGPTLIGALDSMEPPVRPAEKPLRIPLQDVYKIGGIGTVPVGRVETGTLKPGMVVTFAPCNLTTEVKSVEMHHEQLQAAVPGDNVGFNVKNVSIKDIRRGYVASDSTNDPANEAEFFNAQVIILNHPGQIHAGYSPVVDCHTAHIACRWKENCLQIDRR 696
            LA+TLGVKQM+V  NKMDDKTV Y Q+R++EI  EVS +IKK+GYN   V FVPISGW GDNM+E S  MPW+KGPTL+ ALD +EPPVRP++KPLR+PLQDVYKIGGIGTVPVGRVETG +KPG VVTFAP N+TTEVKS+EMHHEQL  A PGDNVGFNVKNVS+KDIRRG V  ++ NDP  EA  F AQVIILNHPGQI  GY+PV+DCHT+HIAC++ E   +IDRR
Sbjct:  139 LAFTLGVKQMVVCCNKMDDKTVNYGQERYDEIVKEVSAYIKKVGYNVEKVRFVPISGWQGDNMIEKSEKMPWYKGPTLLEALDMLEPPVRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVMKPGDVVTFAPANVTTEVKSIEMHHEQLAEATPGDNVGFNVKNVSVKDIRRGNVCGNTKNDPPKEAADFTAQVIILNHPGQIGNGYAPVLDCHTSHIACKFAEIESKIDRR 370          
BLAST of CX301796 vs. ExPASy Swiss-Prot
Match: EF1A_PIRIN (Elongation factor 1-alpha OS=Piriformospora indica GN=TEF1 PE=2 SV=1)

HSP 1 Score: 351.673 bits (901), Expect = 2.224e-96
Identity = 173/246 (70.33%), Postives = 199/246 (80.89%), Query Frame = 1
Query:    1 LAYTLGVKQMIVGVNKMDDKTVGYKQDRFEEIKTEVSNFIKKIGYNPTNVPFVPISGWNGDNMLEASPNMPWWKG--------------PTLIGALDSMEPPVRPAEKPLRIPLQDVYKIGGIGTVPVGRVETGTLKPGMVVTFAPCNLTTEVKSVEMHHEQLQAAVPGDNVGFNVKNVSIKDIRRGYVASDSTNDPANEAEFFNAQVIILNHPGQIHAGYSPVVDCHTAHIACRWKENCLQIDRR 696
            LA+TLGV+Q+IV VNKMD  T  + + RF EI  E SNFIKK+GYNP  V FVPISGW+GDNMLE S NMPW+KG               TL+ A+D++EPPVRP++KPLR+PLQDVYKIGGIGTVPVGRVETG +KPGMVV+FAP N+TTEVKSVEMHHEQL   +PGDNVGFNVKNVS+KDIRRG VASDS NDPA EA  FNAQVI+LNHPGQI AGY+PV+DCHTAHIAC++ E   +IDRR
Sbjct:  139 LAFTLGVRQLIVAVNKMD--TTNWSEARFNEIVKETSNFIKKVGYNPKTVAFVPISGWHGDNMLEPSTNMPWYKGWSKEVKGSSSPATGKTLVDAIDAIEPPVRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVSFAPSNVTTEVKSVEMHHEQLAEGLPGDNVGFNVKNVSVKDIRRGDVASDSKNDPAKEAASFNAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFSELIEKIDRR 382          
BLAST of CX301796 vs. ExPASy Swiss-Prot
Match: EF1A_ONCVO (Elongation factor 1-alpha OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 351.673 bits (901), Expect = 2.224e-96
Identity = 174/244 (71.31%), Postives = 197/244 (80.74%), Query Frame = 1
Query:    1 LAYTLGVKQMIVGVNKMDDKTVGYKQDRFEEIKTEVSNFIKKIGYNPTNVPFVPISGWNGDNMLEASPNMPWWKG------------PTLIGALDSMEPPVRPAEKPLRIPLQDVYKIGGIGTVPVGRVETGTLKPGMVVTFAPCNLTTEVKSVEMHHEQLQAAVPGDNVGFNVKNVSIKDIRRGYVASDSTNDPANEAEFFNAQVIILNHPGQIHAGYSPVVDCHTAHIACRWKENCLQIDRR 696
            LA TLGVKQMIV  NKMD     + + RF E+ TEVSN+IKKIGYNP ++PFVPISG+NGDNMLE S NMPW+KG             TL+ ALDS+ PP RP +KPLR+PLQDVYKIGGIGTVPVGRVETG LKPGM+VTFAP NLTTEVKSVEMHHE LQ A+PGDNVGFNVKN+SIKDIRRG VASDS NDPA E + F AQVII+NHPGQI AGY+PV+DCHTAHIAC++ E   ++DRR
Sbjct:  139 LAQTLGVKQMIVACNKMDSTDPPFSEARFGEVTTEVSNYIKKIGYNPKSIPFVPISGFNGDNMLEPSANMPWFKGWSVERKEGTMTGKTLLEALDSVVPPQRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMIVTFAPQNLTTEVKSVEMHHEALQEALPGDNVGFNVKNISIKDIRRGSVASDSKNDPAKETKMFTAQVIIMNHPGQISAGYTPVLDCHTAHIACKFAELKEKVDRR 382          
BLAST of CX301796 vs. ExPASy Swiss-Prot
Match: EF1A_CHICK (Elongation factor 1-alpha 1 OS=Gallus gallus GN=EEF1A PE=2 SV=1)

HSP 1 Score: 351.673 bits (901), Expect = 2.224e-96
Identity = 176/244 (72.13%), Postives = 193/244 (79.10%), Query Frame = 1
Query:    1 LAYTLGVKQMIVGVNKMDDKTVGYKQDRFEEIKTEVSNFIKKIGYNPTNVPFVPISGWNGDNMLEASPNMPWWKG------------PTLIGALDSMEPPVRPAEKPLRIPLQDVYKIGGIGTVPVGRVETGTLKPGMVVTFAPCNLTTEVKSVEMHHEQLQAAVPGDNVGFNVKNVSIKDIRRGYVASDSTNDPANEAEFFNAQVIILNHPGQIHAGYSPVVDCHTAHIACRWKENCLQIDRR 696
            LAYTLGVKQ+IVGVNKMD     Y Q R+EEI  EVS +IKKIGYNP  V FVPISGWNGDNMLE S NMPW+KG             TL+ ALD + PP RP +KPLR+PLQDVYKIGGIGTVPVGRVETG LKPGMVVTFAP N+TTEVKSVEMHHE L  A+PGDNVGFNVKNVS+KD+RRG VA DS NDP  EA  F AQVIILNHPGQI AGY+PV+DCHTAHIAC++ E   +IDRR
Sbjct:  139 LAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSSNMPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRR 382          
BLAST of CX301796 vs. ExPASy Swiss-Prot
Match: EF1A1_RAT (Elongation factor 1-alpha 1 OS=Rattus norvegicus GN=Eef1a1 PE=2 SV=1)

HSP 1 Score: 351.673 bits (901), Expect = 2.224e-96
Identity = 176/244 (72.13%), Postives = 193/244 (79.10%), Query Frame = 1
Query:    1 LAYTLGVKQMIVGVNKMDDKTVGYKQDRFEEIKTEVSNFIKKIGYNPTNVPFVPISGWNGDNMLEASPNMPWWKG------------PTLIGALDSMEPPVRPAEKPLRIPLQDVYKIGGIGTVPVGRVETGTLKPGMVVTFAPCNLTTEVKSVEMHHEQLQAAVPGDNVGFNVKNVSIKDIRRGYVASDSTNDPANEAEFFNAQVIILNHPGQIHAGYSPVVDCHTAHIACRWKENCLQIDRR 696
            LAYTLGVKQ+IVGVNKMD     Y Q R+EEI  EVS +IKKIGYNP  V FVPISGWNGDNMLE S NMPW+KG             TL+ ALD + PP RP +KPLR+PLQDVYKIGGIGTVPVGRVETG LKPGMVVTFAP N+TTEVKSVEMHHE L  A+PGDNVGFNVKNVS+KD+RRG VA DS NDP  EA  F AQVIILNHPGQI AGY+PV+DCHTAHIAC++ E   +IDRR
Sbjct:  139 LAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKDGSASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRR 382          
BLAST of CX301796 vs. ExPASy Swiss-Prot
Match: EF1A1_RABIT (Elongation factor 1-alpha 1 OS=Oryctolagus cuniculus GN=EEF1A1 PE=1 SV=1)

HSP 1 Score: 351.673 bits (901), Expect = 2.224e-96
Identity = 176/244 (72.13%), Postives = 193/244 (79.10%), Query Frame = 1
Query:    1 LAYTLGVKQMIVGVNKMDDKTVGYKQDRFEEIKTEVSNFIKKIGYNPTNVPFVPISGWNGDNMLEASPNMPWWKG------------PTLIGALDSMEPPVRPAEKPLRIPLQDVYKIGGIGTVPVGRVETGTLKPGMVVTFAPCNLTTEVKSVEMHHEQLQAAVPGDNVGFNVKNVSIKDIRRGYVASDSTNDPANEAEFFNAQVIILNHPGQIHAGYSPVVDCHTAHIACRWKENCLQIDRR 696
            LAYTLGVKQ+IVGVNKMD     Y Q R+EEI  EVS +IKKIGYNP  V FVPISGWNGDNMLE S NMPW+KG             TL+ ALD + PP RP +KPLR+PLQDVYKIGGIGTVPVGRVETG LKPGMVVTFAP N+TTEVKSVEMHHE L  A+PGDNVGFNVKNVS+KD+RRG VA DS NDP  EA  F AQVIILNHPGQI AGY+PV+DCHTAHIAC++ E   +IDRR
Sbjct:  139 LAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRR 382          
BLAST of CX301796 vs. ExPASy Swiss-Prot
Match: EF1A1_PONAB (Elongation factor 1-alpha 1 OS=Pongo abelii GN=EEF1A1 PE=2 SV=2)

HSP 1 Score: 351.673 bits (901), Expect = 2.224e-96
Identity = 176/244 (72.13%), Postives = 193/244 (79.10%), Query Frame = 1
Query:    1 LAYTLGVKQMIVGVNKMDDKTVGYKQDRFEEIKTEVSNFIKKIGYNPTNVPFVPISGWNGDNMLEASPNMPWWKG------------PTLIGALDSMEPPVRPAEKPLRIPLQDVYKIGGIGTVPVGRVETGTLKPGMVVTFAPCNLTTEVKSVEMHHEQLQAAVPGDNVGFNVKNVSIKDIRRGYVASDSTNDPANEAEFFNAQVIILNHPGQIHAGYSPVVDCHTAHIACRWKENCLQIDRR 696
            LAYTLGVKQ+IVGVNKMD     Y Q R+EEI  EVS +IKKIGYNP  V FVPISGWNGDNMLE S NMPW+KG             TL+ ALD + PP RP +KPLR+PLQDVYKIGGIGTVPVGRVETG LKPGMVVTFAP N+TTEVKSVEMHHE L  A+PGDNVGFNVKNVS+KD+RRG VA DS NDP  EA  F AQVIILNHPGQI AGY+PV+DCHTAHIAC++ E   +IDRR
Sbjct:  139 LAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRR 382          
The following BLAST results are available for this feature:
BLAST of CX301796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_EUGGR2.712e-10277.16Elongation factor 1-alpha OS=Euglena gracilis GN=T... [more]
EF1A_DICDI1.066e-9874.57Elongation factor 1-alpha OS=Dictyostelium discoid... [more]
EF1A0_XENLA7.642e-9772.13Elongation factor 1-alpha, somatic form OS=Xenopus... [more]
EF1A_TRYBB1.304e-9672.41Elongation factor 1-alpha OS=Trypanosoma brucei br... [more]
EF1A_PIRIN2.224e-9670.33Elongation factor 1-alpha OS=Piriformospora indica... [more]
EF1A_ONCVO2.224e-9671.31Elongation factor 1-alpha OS=Onchocerca volvulus P... [more]
EF1A_CHICK2.224e-9672.13Elongation factor 1-alpha 1 OS=Gallus gallus GN=EE... [more]
EF1A1_RAT2.224e-9672.13Elongation factor 1-alpha 1 OS=Rattus norvegicus G... [more]
EF1A1_RABIT2.224e-9672.13Elongation factor 1-alpha 1 OS=Oryctolagus cunicul... [more]
EF1A1_PONAB2.224e-9672.13Elongation factor 1-alpha 1 OS=Pongo abelii GN=EEF... [more]

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Properties
Property NameValue
Genbank descriptionC08013F11SK PhyRootSw1 Citrus sinensis cDNA clone C08013F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301796 ID=CX301796; Name=CX301796; organism=Citrus sinensis; type=EST; length=698bp
CTTGCATACACTCTCGGAGTCAAACAAATGATCGTCGGTGTCAATAAAAT
GGATGATAAAACTGTCGGATACAAACAAGATCGTTTTGAAGAAATCAAAA
CTGAAGTCTCCAACTTCATCAAAAAGATCGGTTACAATCCAACCAACGTC
CCATTCGTCCCAATCTCTGGTTGGAACGGAGATAACATGTTAGAAGCTTC
CCCTAACATGCCATGGTGGAAAGGACCAACCTTAATTGGTGCTCTCGATT
CTATGGAACCACCAGTTCGTCCAGCTGAGAAACCACTCAGAATTCCACTC
CAAGATGTATACAAAATTGGAGGTATTGGTACTGTCCCAGTCGGTCGTGT
TGAAACCGGAACCTTAAAACCAGGTATGGTTGTTACCTTCGCTCCTTGCA
ATCTTACCACTGAAGTTAAATCCGTCGAAATGCACCACGAACAACTCCAA
GCTGCTGTCCCTGGTGATAACGTTGGTTTCAATGTTAAAAACGTCTCCAT
CAAAGATATTCGTCGTGGATACGTCGCCTCTGACTCCACCAATGACCCAG
CCAACGAAGCTGAATTCTTCAATGCTCAAGTCATTATTCTTAACCATCCT
GGACAAATCCACGCTGGATACTCTCCTGTCGTCGATTGCCACACTGCTCA
CATTGCTTGCAGATGGAAGGAAAATTGTCTCCAAATCGATCGTCGTAC
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