CX301793

Overview
NameCX301793
Unique NameCX301793
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301793 vs. ExPASy Swiss-Prot
Match: PSA5B_ARATH (Proteasome subunit alpha type-5-B OS=Arabidopsis thaliana GN=PAE2 PE=1 SV=2)

HSP 1 Score: 242.662 bits (618), Expect = 1.035e-63
Identity = 116/169 (68.64%), Postives = 144/169 (85.21%), Query Frame = 2
Query:   74 MYLTRSEYDRGVNTFSPEGRLFQVEYAIEAVKLGSTAVGIQTKEGIILAIEKRLTSSLIEPSSVEKILEIDTHIGAAVSGLIGDGRTLIDHGRIEAQNHRFTYDEPIAVEALTQSICDLALGFGEGSKSREDREKKMSRPFGVALLTAGFDRLAGPQLFFSDPSGTYFQ 580
            M+LTR+EYDRGVNTFSPEGRLFQVEYAIEA+KLGSTA+G++TKEG++LA+EKR+TS L+EPSSVEKI+EID HIG A+SGLI D RTL++H R+E QNHRF+Y EP+ VE+ TQ++CDLAL FGEG       E+ MSRPFGV+LL AG D   GP L+++DPSGT++Q
Sbjct:    1 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEG------EEESMSRPFGVSLLIAGHDE-NGPSLYYTDPSGTFWQ 162          
BLAST of CX301793 vs. ExPASy Swiss-Prot
Match: PSA5A_ARATH (Proteasome subunit alpha type-5-A OS=Arabidopsis thaliana GN=PAE1 PE=1 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.035e-63
Identity = 116/169 (68.64%), Postives = 144/169 (85.21%), Query Frame = 2
Query:   74 MYLTRSEYDRGVNTFSPEGRLFQVEYAIEAVKLGSTAVGIQTKEGIILAIEKRLTSSLIEPSSVEKILEIDTHIGAAVSGLIGDGRTLIDHGRIEAQNHRFTYDEPIAVEALTQSICDLALGFGEGSKSREDREKKMSRPFGVALLTAGFDRLAGPQLFFSDPSGTYFQ 580
            M+LTR+EYDRGVNTFSPEGRLFQVEYAIEA+KLGSTA+G++TKEG++LA+EKR+TS L+EPSSVEKI+EID HIG A+SGLI D RTL++H R+E QNHRF+Y EP+ VE+ TQ++CDLAL FGEG       E+ MSRPFGV+LL AG D   GP L+++DPSGT++Q
Sbjct:    1 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEG------EEESMSRPFGVSLLIAGHDE-NGPSLYYTDPSGTFWQ 162          
BLAST of CX301793 vs. ExPASy Swiss-Prot
Match: PSA5_SOYBN (Proteasome subunit alpha type-5 OS=Glycine max GN=PAE1 PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.352e-63
Identity = 116/169 (68.64%), Postives = 144/169 (85.21%), Query Frame = 2
Query:   74 MYLTRSEYDRGVNTFSPEGRLFQVEYAIEAVKLGSTAVGIQTKEGIILAIEKRLTSSLIEPSSVEKILEIDTHIGAAVSGLIGDGRTLIDHGRIEAQNHRFTYDEPIAVEALTQSICDLALGFGEGSKSREDREKKMSRPFGVALLTAGFDRLAGPQLFFSDPSGTYFQ 580
            M+LTR+EYDRGVNTFSPEGRLFQVEYAIEA+KLGSTA+G++TKEG++LA+EKR+TS L+EPSSVEKI+EID HIG A+SGLI D RTL++H R+E QNHRF+Y EP+ VE+ TQ++CDLAL FGEG       E+ MSRPFGV+LL AG D   GP L+++DPSGT++Q
Sbjct:    1 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGD------EESMSRPFGVSLLIAGHDE-NGPSLYYTDPSGTFWQ 162          
BLAST of CX301793 vs. ExPASy Swiss-Prot
Match: PSA5_SCHPO (Probable proteasome subunit alpha type-5 OS=Schizosaccharomyces pombe GN=SPAC323.02c PE=1 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 2.307e-63
Identity = 116/171 (67.84%), Postives = 142/171 (83.04%), Query Frame = 2
Query:   74 MYLTRSEYDRGVNTFSPEGRLFQVEYAIEAVKLGSTAVGIQTKEGIILAIEKRLTSSLIEPSSVEKILEIDTHIGAAVSGLIGDGRTLIDHGRIEAQNHRFTYDEPIAVEALTQSICDLALGFGEGSKSREDREKKMSRPFGVALLTAGFDRLAGPQLFFSDPSGTYFQYK 586
            M++TRSEYDRGVNTFSPEGRLFQVEYAIEA+KLGSTA+G++TK+ ++L +EKRLTS L+E  SVEK+ EID+HIG A+SGL  D RT+I+H R++ QNHRFTYDEP  +E+ TQSICDLAL FGEG    +  E+ MSRPFGVALL AG D   GPQL+ S+PSGTYF+Y+
Sbjct:    1 MFMTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLMESHSVEKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLALRFGEG---EDGEERIMSRPFGVALLIAGIDE-HGPQLYHSEPSGTYFRYE 167          
BLAST of CX301793 vs. ExPASy Swiss-Prot
Match: PSA5_ORYSJ (Proteasome subunit alpha type-5 OS=Oryza sativa subsp. japonica GN=PAE1 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 2.307e-63
Identity = 116/169 (68.64%), Postives = 144/169 (85.21%), Query Frame = 2
Query:   74 MYLTRSEYDRGVNTFSPEGRLFQVEYAIEAVKLGSTAVGIQTKEGIILAIEKRLTSSLIEPSSVEKILEIDTHIGAAVSGLIGDGRTLIDHGRIEAQNHRFTYDEPIAVEALTQSICDLALGFGEGSKSREDREKKMSRPFGVALLTAGFDRLAGPQLFFSDPSGTYFQ 580
            M+LTR+EYDRGVNTFSPEGRLFQVEYAIEA+KLGSTA+G++TK+G++LA+EKR+TS L+EPSSVEKI+EID HIG A+SGLI D RTL++H R+E QNHRF+Y EP+ VE+ TQ+ICDLAL FGEG       E+ MSRPFGV+LL AG D   GP L+++DPSGT++Q
Sbjct:    1 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKDGVVLAVEKRVTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQAICDLALRFGEGD------EESMSRPFGVSLLIAGHDE-NGPSLYYTDPSGTFWQ 162          
BLAST of CX301793 vs. ExPASy Swiss-Prot
Match: PSA5_DICDI (Proteasome subunit alpha type-5 OS=Dictyostelium discoideum GN=psmA5 PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 6.945e-60
Identity = 113/170 (66.47%), Postives = 139/170 (81.76%), Query Frame = 2
Query:   74 MYLTRSEYDRGVNTFSPEGRLFQVEYAIEAVKLGSTAVGIQTKEGIILAIEKRLTSSLIEPSSVEKILEIDTHIGAAVSGLIGDGRTLIDHGRIEAQNHRFTYDEPIAVEALTQSICDLALGFGEGSKSREDREKKMSRPFGVALLTAGFDRLAGPQLFFSDPSGTYFQY 583
            M+LTRSEYDRGVNTFSPEGRLFQVEYA+EA+KLG   +G+Q +EG++LA+EKRLTS L+EPSS++K++EID H+  A+SGL+ D RT+IDH RIE QNHRF Y+EP+ VE+  QSICDLAL FGE   S E+R   MSRPFGVALL AG D   GP L++SDPSGT+ Q+
Sbjct:    1 MFLTRSEYDRGVNTFSPEGRLFQVEYALEAIKLG---IGVQCEEGVVLAVEKRLTSPLLEPSSIQKVVEIDYHLICALSGLVADARTIIDHARIETQNHRFNYNEPMGVESCVQSICDLALRFGENRNSGEER---MSRPFGVALLIAGIDE-KGPSLYYSDPSGTFTQF 163          
BLAST of CX301793 vs. ExPASy Swiss-Prot
Match: PSA5_MOUSE (Proteasome subunit alpha type-5 OS=Mus musculus GN=Psma5 PE=1 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 2.234e-58
Identity = 116/170 (68.24%), Postives = 137/170 (80.59%), Query Frame = 2
Query:   74 MYLTRSEYDRGVNTFSPEGRLFQVEYAIEAVKLGSTAVGIQTKEGIILAIEKRLTSSLIEPSSVEKILEIDTHIGAAVSGLIGDGRTLIDHGRIEAQNHRFTYDEPIAVEALTQSICDLALGFGEGSKSREDREK-KMSRPFGVALLTAGFDRLAGPQLFFSDPSGTYFQ 580
            M+LTRSEYDRGVNTFSPEGRLFQVEYAIEA+KLGSTA+GIQT EG+ LA+EKR+TS L+EPSS+EKI+EID HIG A+SGLI D +TLID  R+E QNH FTY+E + VE++TQ++ +LAL FGE     ED +   MSRPFGVALL  G D   GPQLF  DPSGT+ Q
Sbjct:    1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGE-----EDADPGAMSRPFGVALLFGGVDE-KGPQLFHMDPSGTFVQ 164          
BLAST of CX301793 vs. ExPASy Swiss-Prot
Match: PSA5_HUMAN (Proteasome subunit alpha type-5 OS=Homo sapiens GN=PSMA5 PE=1 SV=3)

HSP 1 Score: 224.942 bits (572), Expect = 2.234e-58
Identity = 116/170 (68.24%), Postives = 137/170 (80.59%), Query Frame = 2
Query:   74 MYLTRSEYDRGVNTFSPEGRLFQVEYAIEAVKLGSTAVGIQTKEGIILAIEKRLTSSLIEPSSVEKILEIDTHIGAAVSGLIGDGRTLIDHGRIEAQNHRFTYDEPIAVEALTQSICDLALGFGEGSKSREDREK-KMSRPFGVALLTAGFDRLAGPQLFFSDPSGTYFQ 580
            M+LTRSEYDRGVNTFSPEGRLFQVEYAIEA+KLGSTA+GIQT EG+ LA+EKR+TS L+EPSS+EKI+EID HIG A+SGLI D +TLID  R+E QNH FTY+E + VE++TQ++ +LAL FGE     ED +   MSRPFGVALL  G D   GPQLF  DPSGT+ Q
Sbjct:    1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGE-----EDADPGAMSRPFGVALLFGGVDE-KGPQLFHMDPSGTFVQ 164          
BLAST of CX301793 vs. ExPASy Swiss-Prot
Match: PSA5_BOVIN (Proteasome subunit alpha type-5 OS=Bos taurus GN=PSMA5 PE=1 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 2.234e-58
Identity = 116/170 (68.24%), Postives = 137/170 (80.59%), Query Frame = 2
Query:   74 MYLTRSEYDRGVNTFSPEGRLFQVEYAIEAVKLGSTAVGIQTKEGIILAIEKRLTSSLIEPSSVEKILEIDTHIGAAVSGLIGDGRTLIDHGRIEAQNHRFTYDEPIAVEALTQSICDLALGFGEGSKSREDREK-KMSRPFGVALLTAGFDRLAGPQLFFSDPSGTYFQ 580
            M+LTRSEYDRGVNTFSPEGRLFQVEYAIEA+KLGSTA+GIQT EG+ LA+EKR+TS L+EPSS+EKI+EID HIG A+SGLI D +TLID  R+E QNH FTY+E + VE++TQ++ +LAL FGE     ED +   MSRPFGVALL  G D   GPQLF  DPSGT+ Q
Sbjct:    1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGE-----EDADPGAMSRPFGVALLFGGVDE-KGPQLFHMDPSGTFVQ 164          
BLAST of CX301793 vs. ExPASy Swiss-Prot
Match: PSA5_YEAST (Proteasome component PUP2 OS=Saccharomyces cerevisiae GN=PUP2 PE=1 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 2.470e-57
Identity = 109/170 (64.12%), Postives = 134/170 (78.82%), Query Frame = 2
Query:   74 MYLTRSEYDRGVNTFSPEGRLFQVEYAIEAVKLGSTAVGIQTKEGIILAIEKRLTSSLIEPSSVEKILEIDTHIGAAVSGLIGDGRTLIDHGRIEAQNHRFTYDEPIAVEALTQSICDLALGFGEGSKSREDREKKMSRPFGVALLTAGFDRLAGPQLFFSDPSGTYFQY 583
            M+LTRSEYDRGV+TFSPEGRLFQVEY++EA+KLGSTA+GI TKEG++L +EKR TS L+E  S+EKI+EID HIG A+SGL  D R++I+H R  A  H   YDE I VE+LTQS+CDLAL FGEG+      E+ MSRPFGVALL AG D   G QLF ++PSGT+++Y
Sbjct:    1 MFLTRSEYDRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASG---EERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRY 167          
The following BLAST results are available for this feature:
BLAST of CX301793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSA5B_ARATH1.035e-6368.64Proteasome subunit alpha type-5-B OS=Arabidopsis t... [more]
PSA5A_ARATH1.035e-6368.64Proteasome subunit alpha type-5-A OS=Arabidopsis t... [more]
PSA5_SOYBN1.352e-6368.64Proteasome subunit alpha type-5 OS=Glycine max GN=... [more]
PSA5_SCHPO2.307e-6367.84Probable proteasome subunit alpha type-5 OS=Schizo... [more]
PSA5_ORYSJ2.307e-6368.64Proteasome subunit alpha type-5 OS=Oryza sativa su... [more]
PSA5_DICDI6.945e-6066.47Proteasome subunit alpha type-5 OS=Dictyostelium d... [more]
PSA5_MOUSE2.234e-5868.24Proteasome subunit alpha type-5 OS=Mus musculus GN... [more]
PSA5_HUMAN2.234e-5868.24Proteasome subunit alpha type-5 OS=Homo sapiens GN... [more]
PSA5_BOVIN2.234e-5868.24Proteasome subunit alpha type-5 OS=Bos taurus GN=P... [more]
PSA5_YEAST2.470e-5764.12Proteasome component PUP2 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionC08013F08SK PhyRootSw1 Citrus sinensis cDNA clone C08013F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301793 ID=CX301793; Name=CX301793; organism=Citrus sinensis; type=EST; length=586bp
CTCGTGCCGAATTCGGCACGAGGCTTTATTACTATTATCTCATCGTTTCT
CTCATTGCAAAGTTATTCCAAGCATGTATCTGACAAGAAGTGAGTATGAT
AGAGGTGTGAATACCTTTTCACCTGAGGGAAGACTGTTTCAAGTTGAATA
CGCTATTGAGGCTGTAAAGCTTGGCTCTACAGCTGTTGGTATTCAAACAA
AGGAAGGAATCATTCTTGCTATTGAGAAGAGACTGACATCTTCTTTAATT
GAACCATCCTCTGTCGAGAAAATCCTTGAAATCGATACTCATATTGGTGC
TGCTGTTTCTGGTCTTATTGGAGATGGAAGAACGCTAATTGATCATGGTC
GCATTGAAGCTCAGAACCATCGTTTCACTTATGATGAGCCTATTGCTGTC
GAAGCTCTTACCCAATCCATTTGCGATTTAGCTTTGGGATTTGGTGAAGG
AAGTAAGAGTCGTGAAGATCGAGAGAAGAAGATGTCTCGACCTTTTGGTG
TTGCCTTATTAACCGCTGGTTTTGATCGTTTAGCTGGTCCACAGTTATTC
TTCTCTGATCCTTCAGGAACATATTTCCAATACAAA
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