CX301784
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX301784 vs. ExPASy Swiss-Prot
Match: RL4A_ARATH (60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 2.221e-29 Identity = 69/149 (46.31%), Postives = 94/149 (63.09%), Query Frame = 2 Query: 5 LAPGGHLGRFIIWTKGAFEKLDSLFGTYEESAKYKSGFTLPRPLLTNADLARIINSDEIQSVLKPAITTPTVLPKKVNPLRNKAARVALNPHYATVLKRAH--AKANASKAENDKIAAERRRAHKERSKKFAARRRETYKAASAEGEIT 445 LAPGGHLGRF+IWTK AFEKL+S++G++E+ ++ K G+ LPR + NADLARIINSDEIQSV+ P K NPL+N + LNP YA KR A+A KA+ +K+A +R+ KE + A + YK ++ + T Sbjct: 246 LAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEIQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNP-YAKTAKRMSLLAEAQRVKAKKEKLAKKRKTVTKEEALAIKAAGKSWYKTMISDSDYT 393
BLAST of CX301784 vs. ExPASy Swiss-Prot
Match: RL4B_ARATH (60S ribosomal protein L4-2 OS=Arabidopsis thaliana GN=RPL4D PE=1 SV=2) HSP 1 Score: 124.405 bits (311), Expect = 3.207e-28 Identity = 67/149 (44.97%), Postives = 93/149 (62.42%), Query Frame = 2 Query: 5 LAPGGHLGRFIIWTKGAFEKLDSLFGTYEESAKYKSGFTLPRPLLTNADLARIINSDEIQSVLKPAITTPTVLPKKVNPLRNKAARVALNPHYATVLKRAHAKANAS--KAENDKIAAERRRAHKERSKKFAARRRETYKAASAEGEIT 445 LAPGGHLGRF+IWTK AFEKL+S++G++E+ ++ K G+ LPR + NADLARIINSDE+QSV+ P K NPL+N LNP YA KR A AS KA+ +K+ +R+ KE ++ A + Y+ ++ + T Sbjct: 247 LAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEVQSVVNPIKDGSKRAVLKKNPLKNLNVMFKLNP-YAKTAKRMSLLAEASRVKAKKEKLEKKRKVVTKEEAQAIKAAGKAWYQTMISDSDYT 394
BLAST of CX301784 vs. ExPASy Swiss-Prot
Match: RL4_PRUAR (60S ribosomal protein L4 OS=Prunus armeniaca GN=RPL4 PE=2 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 5.469e-28 Identity = 63/148 (42.57%), Postives = 94/148 (63.51%), Query Frame = 2 Query: 5 LAPGGHLGRFIIWTKGAFEKLDSLFGTYEESAKYKSGFTLPRPLLTNADLARIINSDEIQSVLKPAITTPTVLPKKVNPLRNKAARVALNPHYATVLKRA-HAKANASKAENDKIAAERRRAHKERSKKFAARRRETYKAASAEGEIT 445 LAPGGHLGRF++WTK AFEKLDS++G++++ ++ K+G+ LPR + NADLARIINSDE+QSV+ P P K NPLR + LNP+ T + + A+A KA+ +K+ +R+ KE + A + Y+ ++ + T Sbjct: 248 LAPGGHLGRFVVWTKSAFEKLDSIYGSFDKVSEKKNGYVLPRSKMVNADLARIINSDEVQSVVSPIQEGSKRAPLKKNPLRILNTMLKLNPYAKTARRMSLLAEAERVKAKKEKLDKKRKPISKEEASTIKAAGKAWYQTMISDSDYT 395
BLAST of CX301784 vs. ExPASy Swiss-Prot
Match: RL4_DICDI (60S ribosomal protein L4 OS=Dictyostelium discoideum GN=rpl4 PE=1 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 6.686e-26 Identity = 58/111 (52.25%), Postives = 77/111 (69.37%), Query Frame = 2 Query: 5 LAPGGHLGRFIIWTKGAFEKLDSLFGTYEESAKYKSGFTLPRPLLTNADLARIINSDEIQSVL---KPAITTPTVLPKKVNPLRNKAARVALNPHYATVLKRAHAKANASK 328 LAPGGHLGRFIIWTK AFE+LDS FGT+ +S+ K G+TLPRP++ NAD+ R++NSDEIQ+ + K + PT ++ NPL+N A + LNP A +R K+ SK Sbjct: 239 LAPGGHLGRFIIWTKSAFEQLDSTFGTFAKSSAQKKGYTLPRPMIANADIVRLVNSDEIQAAVRASKVVVKRPTAPVRRSNPLKNLRAMIKLNP-AAVSTRRTQVKSLKSK 348
BLAST of CX301784 vs. ExPASy Swiss-Prot
Match: RL4_TRYBB (60S ribosomal protein L4 OS=Trypanosoma brucei brucei GN=RPL4 PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 3.106e-23 Identity = 61/142 (42.96%), Postives = 82/142 (57.75%), Query Frame = 2 Query: 5 LAPGGHLGRFIIWTKGAFEKLDSLFGTYEESAKYKSGFTLPRPLLTNADLARIINSDEIQSVLKP---AITTPTVLPKKVNPLRNKAARVALNPHYATVLKRAHAKANASKAENDKIAAERRRAHKERSKKFAARRRETYKA 421 LAPGGH+GRFIIWTK AFEKLD +FGT+ E + KSGF LP P+LT+ D+ RI+ S+E++ VLKP P+ + N +RN+ R+ LNP + KA A +N K R H + + A R+ KA Sbjct: 238 LAPGGHVGRFIIWTKSAFEKLDKIFGTFTEPSTVKSGFMLPAPMLTSTDVTRIMQSEEVRRVLKPKKLQPKRPSRYRQPTNGIRNRRLRLRLNPF------QKKEKAMAKGMQNKK---NREARHAAKVVRLAKARKNVAKA 370
BLAST of CX301784 vs. ExPASy Swiss-Prot
Match: RL4A_SCHPO (60S ribosomal protein L4-A OS=Schizosaccharomyces pombe GN=rpl4a PE=1 SV=2) HSP 1 Score: 104.375 bits (259), Expect = 3.434e-22 Identity = 60/120 (50.00%), Postives = 77/120 (64.17%), Query Frame = 2 Query: 5 LAPGGHLGRFIIWTKGAFEKLDSLFGTYEESAKYKSGFTLPRPLLTNADLARIINSDEIQSVLKPA--ITTPTVLPKKVNPLRNKAARVALNPHYATVLKRAHAKANASKAENDKIAAER 358 LAPGGHLGRF+IWTK AF LDS+FG+ E+A+ K + LP +++NAD+ R+INSDEIQS++K A +K NPL+NKA LNP YA K A+ K N K K A E+ Sbjct: 240 LAPGGHLGRFVIWTKSAFGLLDSVFGSTTEAAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLARLNP-YAKAYK-ANVKLNTGK--TPKAAGEK 355
BLAST of CX301784 vs. ExPASy Swiss-Prot
Match: RL4_DROME (60S ribosomal protein L4 OS=Drosophila melanogaster GN=RpL4 PE=2 SV=2) HSP 1 Score: 102.834 bits (255), Expect = 9.991e-22 Identity = 55/131 (41.98%), Postives = 83/131 (63.36%), Query Frame = 2 Query: 5 LAPGGHLGRFIIWTKGAFEKLDSLFGTYEESAKYKSGFTLPRPLLTNADLARIINSDEIQSVLKPAITTPTVLPKKVNPLRNKAARVALNPHYATVLKRAHAKANASKAENDKIAAERRRAHKERSKKFAA 397 LAPGGH+GRF+IWT+ AF +L+ LFGT+++ + K G+ LP+P + N DL+R++ S+EI+ VL+ +++NPL N + LNP YA VLKR A A A K K+ A+ ++ + E +K A Sbjct: 243 LAPGGHVGRFVIWTESAFARLNDLFGTWKKPSTLKKGYNLPQPKMANTDLSRLLKSEEIRKVLRDPRKRVFRSVRRLNPLTNVRQLIKLNP-YAEVLKRRAALA-AEKRTVAKVLAKAKKQNVELAKSHFA 371
BLAST of CX301784 vs. ExPASy Swiss-Prot
Match: RL4B_SCHPO (60S ribosomal protein L4-B OS=Schizosaccharomyces pombe GN=rpl4b PE=2 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 9.991e-22 Identity = 60/120 (50.00%), Postives = 77/120 (64.17%), Query Frame = 2 Query: 5 LAPGGHLGRFIIWTKGAFEKLDSLFGTYEESAKYKSGFTLPRPLLTNADLARIINSDEIQSVLKPA--ITTPTVLPKKVNPLRNKAARVALNPHYATVLKRAHAKANASKAENDKIAAER 358 LAPGGHLGRF+IWTK AF LDS+FG+ E A+ K + LP +++NAD+ R+INSDEIQS++K A +K NPL+NKA LNP YA K A+ K N+ K K A E+ Sbjct: 240 LAPGGHLGRFVIWTKSAFGLLDSVFGSTTEVAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLSRLNP-YAKAYK-ANVKINSEK--TPKAAGEK 355
BLAST of CX301784 vs. ExPASy Swiss-Prot
Match: RL4A_XENLA (60S ribosomal protein L4-A OS=Xenopus laevis GN=rpl4-A PE=2 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 3.797e-21 Identity = 59/147 (40.14%), Postives = 83/147 (56.46%), Query Frame = 2 Query: 5 LAPGGHLGRFIIWTKGAFEKLDSLFGTYEESAKYKSGFTLPRPLLTNADLARIINSDEIQSVLKPAITTPTVLPKKVNPLRNKAARVALNPHYATVLKRA------HAKANASKAENDKIAAERRRAHKERSKKFA-ARRRETYKAA 424 LAPGGH+GRF IWT+ AF KLD L+GT+ +SAK K+ + LP +TN DL RI+ S EIQ L+ K NPL+N + LNP+ T + A + KA K ++ K A++ K + K A A++R+ +AA Sbjct: 244 LAPGGHVGRFCIWTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQLENIKAKEKKPDDGKPKAKKPLDAKTKMIKLAKAKKRQAREAA 390
BLAST of CX301784 vs. ExPASy Swiss-Prot
Match: RL4B_XENLA (60S ribosomal protein L4-B (Fragment) OS=Xenopus laevis GN=rpl4-B PE=2 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 6.476e-21 Identity = 57/151 (37.75%), Postives = 81/151 (53.64%), Query Frame = 2 Query: 5 LAPGGHLGRFIIWTKGAFEKLDSLFGTYEESAKYKSGFTLPRPLLTNADLARIINSDEIQSVLKPAITTPTVLPKKVNPLRNKAARVALNPHYATVLKRA------HAKANASKAENDKIAAERRRAHKERSKKFAARRRETYKAASAEGE 439 LAPGGH+GRF IWT+ AF KLD L+GT+ +SAK K+ + LP +TN DL RI+ S EIQ L+ K NPL+N + LNP+ T + A + KA K ++ K A++ K + K A ++ +A + E Sbjct: 239 LAPGGHVGRFCIWTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQLENIKAKEKKPDDGKPKAKKPLDAKTKMIKLAKAKKRQARAEAKTAE 389 The following BLAST results are available for this feature:
BLAST of CX301784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 22
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Sequences
The
following sequences are available for this feature:
EST sequence >CX301784 ID=CX301784; Name=CX301784; organism=Citrus sinensis; type=EST; length=524bpback to top |