CX301784

Overview
NameCX301784
Unique NameCX301784
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length524
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5013 contig Csv1_Contig5013:359..882. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX301784 vs. ExPASy Swiss-Prot
Match: RL4A_ARATH (60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.221e-29
Identity = 69/149 (46.31%), Postives = 94/149 (63.09%), Query Frame = 2
Query:    5 LAPGGHLGRFIIWTKGAFEKLDSLFGTYEESAKYKSGFTLPRPLLTNADLARIINSDEIQSVLKPAITTPTVLPKKVNPLRNKAARVALNPHYATVLKRAH--AKANASKAENDKIAAERRRAHKERSKKFAARRRETYKAASAEGEIT 445
            LAPGGHLGRF+IWTK AFEKL+S++G++E+ ++ K G+ LPR  + NADLARIINSDEIQSV+ P          K NPL+N    + LNP YA   KR    A+A   KA+ +K+A +R+   KE +    A  +  YK   ++ + T
Sbjct:  246 LAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEIQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNP-YAKTAKRMSLLAEAQRVKAKKEKLAKKRKTVTKEEALAIKAAGKSWYKTMISDSDYT 393          
BLAST of CX301784 vs. ExPASy Swiss-Prot
Match: RL4B_ARATH (60S ribosomal protein L4-2 OS=Arabidopsis thaliana GN=RPL4D PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 3.207e-28
Identity = 67/149 (44.97%), Postives = 93/149 (62.42%), Query Frame = 2
Query:    5 LAPGGHLGRFIIWTKGAFEKLDSLFGTYEESAKYKSGFTLPRPLLTNADLARIINSDEIQSVLKPAITTPTVLPKKVNPLRNKAARVALNPHYATVLKRAHAKANAS--KAENDKIAAERRRAHKERSKKFAARRRETYKAASAEGEIT 445
            LAPGGHLGRF+IWTK AFEKL+S++G++E+ ++ K G+ LPR  + NADLARIINSDE+QSV+ P          K NPL+N      LNP YA   KR    A AS  KA+ +K+  +R+   KE ++   A  +  Y+   ++ + T
Sbjct:  247 LAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEVQSVVNPIKDGSKRAVLKKNPLKNLNVMFKLNP-YAKTAKRMSLLAEASRVKAKKEKLEKKRKVVTKEEAQAIKAAGKAWYQTMISDSDYT 394          
BLAST of CX301784 vs. ExPASy Swiss-Prot
Match: RL4_PRUAR (60S ribosomal protein L4 OS=Prunus armeniaca GN=RPL4 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.469e-28
Identity = 63/148 (42.57%), Postives = 94/148 (63.51%), Query Frame = 2
Query:    5 LAPGGHLGRFIIWTKGAFEKLDSLFGTYEESAKYKSGFTLPRPLLTNADLARIINSDEIQSVLKPAITTPTVLPKKVNPLRNKAARVALNPHYATVLKRA-HAKANASKAENDKIAAERRRAHKERSKKFAARRRETYKAASAEGEIT 445
            LAPGGHLGRF++WTK AFEKLDS++G++++ ++ K+G+ LPR  + NADLARIINSDE+QSV+ P        P K NPLR     + LNP+  T  + +  A+A   KA+ +K+  +R+   KE +    A  +  Y+   ++ + T
Sbjct:  248 LAPGGHLGRFVVWTKSAFEKLDSIYGSFDKVSEKKNGYVLPRSKMVNADLARIINSDEVQSVVSPIQEGSKRAPLKKNPLRILNTMLKLNPYAKTARRMSLLAEAERVKAKKEKLDKKRKPISKEEASTIKAAGKAWYQTMISDSDYT 395          
BLAST of CX301784 vs. ExPASy Swiss-Prot
Match: RL4_DICDI (60S ribosomal protein L4 OS=Dictyostelium discoideum GN=rpl4 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 6.686e-26
Identity = 58/111 (52.25%), Postives = 77/111 (69.37%), Query Frame = 2
Query:    5 LAPGGHLGRFIIWTKGAFEKLDSLFGTYEESAKYKSGFTLPRPLLTNADLARIINSDEIQSVL---KPAITTPTVLPKKVNPLRNKAARVALNPHYATVLKRAHAKANASK 328
            LAPGGHLGRFIIWTK AFE+LDS FGT+ +S+  K G+TLPRP++ NAD+ R++NSDEIQ+ +   K  +  PT   ++ NPL+N  A + LNP  A   +R   K+  SK
Sbjct:  239 LAPGGHLGRFIIWTKSAFEQLDSTFGTFAKSSAQKKGYTLPRPMIANADIVRLVNSDEIQAAVRASKVVVKRPTAPVRRSNPLKNLRAMIKLNP-AAVSTRRTQVKSLKSK 348          
BLAST of CX301784 vs. ExPASy Swiss-Prot
Match: RL4_TRYBB (60S ribosomal protein L4 OS=Trypanosoma brucei brucei GN=RPL4 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.106e-23
Identity = 61/142 (42.96%), Postives = 82/142 (57.75%), Query Frame = 2
Query:    5 LAPGGHLGRFIIWTKGAFEKLDSLFGTYEESAKYKSGFTLPRPLLTNADLARIINSDEIQSVLKP---AITTPTVLPKKVNPLRNKAARVALNPHYATVLKRAHAKANASKAENDKIAAERRRAHKERSKKFAARRRETYKA 421
            LAPGGH+GRFIIWTK AFEKLD +FGT+ E +  KSGF LP P+LT+ D+ RI+ S+E++ VLKP       P+   +  N +RN+  R+ LNP       +   KA A   +N K    R   H  +  + A  R+   KA
Sbjct:  238 LAPGGHVGRFIIWTKSAFEKLDKIFGTFTEPSTVKSGFMLPAPMLTSTDVTRIMQSEEVRRVLKPKKLQPKRPSRYRQPTNGIRNRRLRLRLNPF------QKKEKAMAKGMQNKK---NREARHAAKVVRLAKARKNVAKA 370          
BLAST of CX301784 vs. ExPASy Swiss-Prot
Match: RL4A_SCHPO (60S ribosomal protein L4-A OS=Schizosaccharomyces pombe GN=rpl4a PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 3.434e-22
Identity = 60/120 (50.00%), Postives = 77/120 (64.17%), Query Frame = 2
Query:    5 LAPGGHLGRFIIWTKGAFEKLDSLFGTYEESAKYKSGFTLPRPLLTNADLARIINSDEIQSVLKPA--ITTPTVLPKKVNPLRNKAARVALNPHYATVLKRAHAKANASKAENDKIAAER 358
            LAPGGHLGRF+IWTK AF  LDS+FG+  E+A+ K  + LP  +++NAD+ R+INSDEIQS++K A          +K NPL+NKA    LNP YA   K A+ K N  K    K A E+
Sbjct:  240 LAPGGHLGRFVIWTKSAFGLLDSVFGSTTEAAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLARLNP-YAKAYK-ANVKLNTGK--TPKAAGEK 355          
BLAST of CX301784 vs. ExPASy Swiss-Prot
Match: RL4_DROME (60S ribosomal protein L4 OS=Drosophila melanogaster GN=RpL4 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 9.991e-22
Identity = 55/131 (41.98%), Postives = 83/131 (63.36%), Query Frame = 2
Query:    5 LAPGGHLGRFIIWTKGAFEKLDSLFGTYEESAKYKSGFTLPRPLLTNADLARIINSDEIQSVLKPAITTPTVLPKKVNPLRNKAARVALNPHYATVLKRAHAKANASKAENDKIAAERRRAHKERSKKFAA 397
            LAPGGH+GRF+IWT+ AF +L+ LFGT+++ +  K G+ LP+P + N DL+R++ S+EI+ VL+          +++NPL N    + LNP YA VLKR  A A A K    K+ A+ ++ + E +K   A
Sbjct:  243 LAPGGHVGRFVIWTESAFARLNDLFGTWKKPSTLKKGYNLPQPKMANTDLSRLLKSEEIRKVLRDPRKRVFRSVRRLNPLTNVRQLIKLNP-YAEVLKRRAALA-AEKRTVAKVLAKAKKQNVELAKSHFA 371          
BLAST of CX301784 vs. ExPASy Swiss-Prot
Match: RL4B_SCHPO (60S ribosomal protein L4-B OS=Schizosaccharomyces pombe GN=rpl4b PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 9.991e-22
Identity = 60/120 (50.00%), Postives = 77/120 (64.17%), Query Frame = 2
Query:    5 LAPGGHLGRFIIWTKGAFEKLDSLFGTYEESAKYKSGFTLPRPLLTNADLARIINSDEIQSVLKPA--ITTPTVLPKKVNPLRNKAARVALNPHYATVLKRAHAKANASKAENDKIAAER 358
            LAPGGHLGRF+IWTK AF  LDS+FG+  E A+ K  + LP  +++NAD+ R+INSDEIQS++K A          +K NPL+NKA    LNP YA   K A+ K N+ K    K A E+
Sbjct:  240 LAPGGHLGRFVIWTKSAFGLLDSVFGSTTEVAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLSRLNP-YAKAYK-ANVKINSEK--TPKAAGEK 355          
BLAST of CX301784 vs. ExPASy Swiss-Prot
Match: RL4A_XENLA (60S ribosomal protein L4-A OS=Xenopus laevis GN=rpl4-A PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.797e-21
Identity = 59/147 (40.14%), Postives = 83/147 (56.46%), Query Frame = 2
Query:    5 LAPGGHLGRFIIWTKGAFEKLDSLFGTYEESAKYKSGFTLPRPLLTNADLARIINSDEIQSVLKPAITTPTVLPKKVNPLRNKAARVALNPHYATVLKRA------HAKANASKAENDKIAAERRRAHKERSKKFA-ARRRETYKAA 424
            LAPGGH+GRF IWT+ AF KLD L+GT+ +SAK K+ + LP   +TN DL RI+ S EIQ  L+           K NPL+N    + LNP+  T  + A      + KA   K ++ K  A++    K +  K A A++R+  +AA
Sbjct:  244 LAPGGHVGRFCIWTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQLENIKAKEKKPDDGKPKAKKPLDAKTKMIKLAKAKKRQAREAA 390          
BLAST of CX301784 vs. ExPASy Swiss-Prot
Match: RL4B_XENLA (60S ribosomal protein L4-B (Fragment) OS=Xenopus laevis GN=rpl4-B PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.476e-21
Identity = 57/151 (37.75%), Postives = 81/151 (53.64%), Query Frame = 2
Query:    5 LAPGGHLGRFIIWTKGAFEKLDSLFGTYEESAKYKSGFTLPRPLLTNADLARIINSDEIQSVLKPAITTPTVLPKKVNPLRNKAARVALNPHYATVLKRA------HAKANASKAENDKIAAERRRAHKERSKKFAARRRETYKAASAEGE 439
            LAPGGH+GRF IWT+ AF KLD L+GT+ +SAK K+ + LP   +TN DL RI+ S EIQ  L+           K NPL+N    + LNP+  T  + A      + KA   K ++ K  A++    K +  K A  ++   +A +   E
Sbjct:  239 LAPGGHVGRFCIWTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQLENIKAKEKKPDDGKPKAKKPLDAKTKMIKLAKAKKRQARAEAKTAE 389          
The following BLAST results are available for this feature:
BLAST of CX301784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
RL4A_ARATH2.221e-2946.3160S ribosomal protein L4-1 OS=Arabidopsis thaliana... [more]
RL4B_ARATH3.207e-2844.9760S ribosomal protein L4-2 OS=Arabidopsis thaliana... [more]
RL4_PRUAR5.469e-2842.5760S ribosomal protein L4 OS=Prunus armeniaca GN=RP... [more]
RL4_DICDI6.686e-2652.2560S ribosomal protein L4 OS=Dictyostelium discoide... [more]
RL4_TRYBB3.106e-2342.9660S ribosomal protein L4 OS=Trypanosoma brucei bru... [more]
RL4A_SCHPO3.434e-2250.0060S ribosomal protein L4-A OS=Schizosaccharomyces ... [more]
RL4_DROME9.991e-2241.9860S ribosomal protein L4 OS=Drosophila melanogaste... [more]
RL4B_SCHPO9.991e-2250.0060S ribosomal protein L4-B OS=Schizosaccharomyces ... [more]
RL4A_XENLA3.797e-2140.1460S ribosomal protein L4-A OS=Xenopus laevis GN=rp... [more]
RL4B_XENLA6.476e-2137.7560S ribosomal protein L4-B (Fragment) OS=Xenopus l... [more]

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Properties
Property NameValue
Genbank descriptionC08013E11SK PhyRootSw1 Citrus sinensis cDNA clone C08013E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301784 ID=CX301784; Name=CX301784; organism=Citrus sinensis; type=EST; length=524bp
GGACCTTGCTCCTGGAGGTCACCTTGGCCGCTTCATCATCTGGACCAAGG
GTGCTTTCGAGAAGTTGGATTCCTTGTTCGGTACCTACGAGGAGAGCGCC
AAGTACAAGAGTGGATTCACCTTACCTCGTCCATTGTTGACCAACGCCGA
TCTTGCCCGTATCATCAACTCTGACGAAATCCAATCTGTCTTGAAGCCTG
CCATTACCACCCCAACTGTCTTACCAAAGAAGGTCAACCCTCTCCGCAAC
AAGGCTGCCCGTGTTGCCTTAAACCCACACTACGCCACCGTCTTGAAGAG
AGCCCACGCCAAGGCTAACGCTTCCAAGGCTGAGAACGATAAGATCGCTG
CTGAACGCAGAAGAGCTCATAAGGAAAGAAGCAAGAAATTCGCTGCCAGA
CGAAGAGAGACATACAAGGCTGCTTCTGCTGAAGGTGAAATCACCTTCTA
AGCAGTTCTCTCCATATTGAACGGCATAAAATAACCAAGTCAATCATTAC
AAAAAAAAAAAAAAAAAAAAAAAA
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