EY716918

Overview
NameEY716918
Unique NameEY716918
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY716918 vs. ExPASy Swiss-Prot
Match: SPD2_ARATH (Spermidine synthase 2 OS=Arabidopsis thaliana GN=SPDSYN2 PE=1 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 6.005e-57
Identity = 101/137 (73.72%), Postives = 114/137 (83.21%), Query Frame = 3
Query:  345 MAETGSAAATDLPLKRPRDDGEKEANNNNNGSVLMEMDSN----KQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLWSIPNPKKVLVI 743
            M+ T  A+ TDLP+KRPR     EA  +NNG   ME ++     K+P C+SS+IPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQ+V+VFQS+TYGKVL+LDGVIQLTERDECAYQEMITHLPL SI NPKKVLVI
Sbjct:    1 MSSTQEASVTDLPVKRPR-----EAEEDNNGGA-METENGGGEIKEPSCMSSIIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSISNPKKVLVI 131          

HSP 2 Score: 44.2838 bits (103), Expect = 6.005e-57
Identity = 19/27 (70.37%), Postives = 24/27 (88.89%), Query Frame = 1
Query:  745 GGGNGGVLREISRHSSGETMDICEMIK 825
            GGG+GGVLRE++RHSS E +DICE+ K
Sbjct:  132 GGGDGGVLREVARHSSVEQIDICEIDK 158          
BLAST of EY716918 vs. ExPASy Swiss-Prot
Match: SPDE_SOLLC (Spermidine synthase OS=Solanum lycopersicum GN=SPDSYN PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 8.516e-56
Identity = 98/128 (76.56%), Postives = 109/128 (85.16%), Query Frame = 3
Query:  372 TDLPLKRPRDD-GEKE---ANNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLWSIPNPKKVLVI 743
            T+LP+KRPR++  E E   ANN+NNG      +  +    ISSV+PGWFSEISP+WPGEAHSLKVEKILFQGKSDYQNV+VFQSSTYGKVL+LDGVIQLTERDECAYQEMITHLPL SIPNPKKVLVI
Sbjct:   12 TELPVKRPREEEAETEMEAANNSNNGC-----EKEESSPYISSVLPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVLVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVI 134          

HSP 2 Score: 47.3654 bits (111), Expect = 8.516e-56
Identity = 22/36 (61.11%), Postives = 27/36 (75.00%), Query Frame = 1
Query:  718 PTRRKFW*FGGGNGGVLREISRHSSGETMDICEMIK 825
            P  +K    GGG+GGVLRE+SRHSS E +DICE+ K
Sbjct:  126 PNPKKVLVIGGGDGGVLREVSRHSSVEQIDICEIDK 161          
BLAST of EY716918 vs. ExPASy Swiss-Prot
Match: SPD2_DATST (Spermidine synthase 2 OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 4.550e-54
Identity = 90/108 (83.33%), Postives = 98/108 (90.74%), Query Frame = 3
Query:  420 NNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLWSIPNPKKVLVI 743
            NNNNNG       ++K+  CISSV+PGWFSEISP+WPGEAHSLKVEKILFQGKSDYQ+VMVFQS+TYGKVL+LDGVIQLTERDECAYQEMITHLPL SIPNPKKVLVI
Sbjct:    7 NNNNNGCT-----NDKESPCISSVLPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQDVMVFQSTTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVI 109          

HSP 2 Score: 47.3654 bits (111), Expect = 4.550e-54
Identity = 22/36 (61.11%), Postives = 27/36 (75.00%), Query Frame = 1
Query:  718 PTRRKFW*FGGGNGGVLREISRHSSGETMDICEMIK 825
            P  +K    GGG+GGVLRE+SRHSS E +DICE+ K
Sbjct:  101 PNPKKVLVIGGGDGGVLREVSRHSSVEQIDICEIDK 136          
BLAST of EY716918 vs. ExPASy Swiss-Prot
Match: SPD1_PEA (Spermidine synthase 1 OS=Pisum sativum GN=SPDSYN1 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 5.929e-54
Identity = 96/125 (76.80%), Postives = 105/125 (84.00%), Query Frame = 3
Query:  369 ATDLPLKRPRDDGEKEANNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLWSIPNPKKVLVI 743
            +TD PLKR R+D   E N  ++      +    QP+ +SSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQ+VMVFQS+TYGKVLILDGVIQLTERDECAYQEMITHLPL SIPNPKKVLVI
Sbjct:   10 STDSPLKRQRED---EVNGVSD-----TLSKEPQPNGLSSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQDVMVFQSATYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVI 126          

HSP 2 Score: 46.2098 bits (108), Expect = 5.929e-54
Identity = 21/36 (58.33%), Postives = 27/36 (75.00%), Query Frame = 1
Query:  718 PTRRKFW*FGGGNGGVLREISRHSSGETMDICEMIK 825
            P  +K    GGG+GGVLRE++RHSS E +DICE+ K
Sbjct:  118 PNPKKVLVIGGGDGGVLREVARHSSVEKIDICEIDK 153          
BLAST of EY716918 vs. ExPASy Swiss-Prot
Match: SPD1_ARATH (Spermidine synthase 1 OS=Arabidopsis thaliana GN=SPDSYN1 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.007e-53
Identity = 95/129 (73.64%), Postives = 109/129 (84.50%), Query Frame = 3
Query:  366 AATDLPLKRPRDDGEKEANNNNNGSVLMEM---DSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLWSIPNPKKVLVI 743
            +ATDL  KRPR++      ++N G+  ME    D  K+P C S+VIPGWFSE+SPMWPGEAHSLKVEK+LFQGKSDYQ+V+VFQS+TYGKVL+LDGVIQLTERDECAYQEMITHLPL SIPNPKKVLVI
Sbjct:    7 SATDL--KRPREE------DDNGGAATMETENGDQKKEPACFSTVIPGWFSEMSPMWPGEAHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVI 127          

HSP 2 Score: 43.5134 bits (101), Expect = 1.007e-53
Identity = 19/36 (52.78%), Postives = 27/36 (75.00%), Query Frame = 1
Query:  718 PTRRKFW*FGGGNGGVLREISRHSSGETMDICEMIK 825
            P  +K    GGG+GGVLRE++RH+S E +D+CE+ K
Sbjct:  119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDK 154          
BLAST of EY716918 vs. ExPASy Swiss-Prot
Match: SPD1_DATST (Spermidine synthase 1 OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 8.409e-53
Identity = 88/99 (88.89%), Postives = 93/99 (93.94%), Query Frame = 3
Query:  447 MEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLWSIPNPKKVLVI 743
            ME  +NK+   ISS++PGWFSEISP+WPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPL SIPNPKKVLVI
Sbjct:    1 MEEANNKESPYISSILPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVI 99          

HSP 2 Score: 47.3654 bits (111), Expect = 8.409e-53
Identity = 22/36 (61.11%), Postives = 27/36 (75.00%), Query Frame = 1
Query:  718 PTRRKFW*FGGGNGGVLREISRHSSGETMDICEMIK 825
            P  +K    GGG+GGVLRE+SRHSS E +DICE+ K
Sbjct:   91 PNPKKVLVIGGGDGGVLREVSRHSSVEQIDICEIDK 126          
BLAST of EY716918 vs. ExPASy Swiss-Prot
Match: SPDE_NICSY (Spermidine synthase OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.862e-52
Identity = 91/109 (83.49%), Postives = 97/109 (88.99%), Query Frame = 3
Query:  417 ANNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLWSIPNPKKVLVI 743
            AN+NNNG       +N+ P  ISSV+PGWFSEISP+WPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVL+LDGVIQLTERDECAYQEMI HLPL SIPNPKKVLVI
Sbjct:    4 ANHNNNGC------TNESP-YISSVLPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMIAHLPLCSIPNPKKVLVI 105          

HSP 2 Score: 47.3654 bits (111), Expect = 1.862e-52
Identity = 22/36 (61.11%), Postives = 27/36 (75.00%), Query Frame = 1
Query:  718 PTRRKFW*FGGGNGGVLREISRHSSGETMDICEMIK 825
            P  +K    GGG+GGVLRE+SRHSS E +DICE+ K
Sbjct:   97 PNPKKVLVIGGGDGGVLREVSRHSSVEQIDICEIDK 132          
BLAST of EY716918 vs. ExPASy Swiss-Prot
Match: SPD1_HYONI (Spermidine synthase 1 OS=Hyoscyamus niger PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 2.427e-52
Identity = 89/110 (80.91%), Postives = 96/110 (87.27%), Query Frame = 3
Query:  414 EANNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLWSIPNPKKVLVI 743
            E  N +NG      ++ K+   ISSV+PGWFSEISP+WPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVL+LDGVIQLTERDECAYQEMITHLPL SIPNPKKVLVI
Sbjct:    2 EVTNQSNGC----SNNEKESPYISSVLPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVI 107          

HSP 2 Score: 47.3654 bits (111), Expect = 2.427e-52
Identity = 22/36 (61.11%), Postives = 27/36 (75.00%), Query Frame = 1
Query:  718 PTRRKFW*FGGGNGGVLREISRHSSGETMDICEMIK 825
            P  +K    GGG+GGVLRE+SRHSS E +DICE+ K
Sbjct:   99 PNPKKVLVIGGGDGGVLREVSRHSSVEQIDICEIDK 134          
BLAST of EY716918 vs. ExPASy Swiss-Prot
Match: SPD2_PEA (Spermidine synthase 2 OS=Pisum sativum GN=SPDSYN2 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 7.002e-52
Identity = 94/131 (71.76%), Postives = 108/131 (82.44%), Query Frame = 3
Query:  360 SAAATDLPLKRPRDDGEKEANNNNNGSVLMEMDS-NKQP--DCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLWSIPNPKKVLVI 743
            S    +  +K  RDD EK +N  +  +V M+++  +K P  + +SSVIPGWFSEISPMWPGEAHSLK+EKILFQGKS+YQ VMVFQSSTYGKVL+LDGVIQLTERDECAYQEMITHLPL SIPNPKKVLVI
Sbjct:    5 STVELESSMKEHRDDDEK-SNGFSVSAVSMDVEGGDKDPSGNGVSSVIPGWFSEISPMWPGEAHSLKIEKILFQGKSEYQKVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVI 134          

HSP 2 Score: 45.0542 bits (105), Expect = 7.002e-52
Identity = 20/34 (58.82%), Postives = 26/34 (76.47%), Query Frame = 1
Query:  718 PTRRKFW*FGGGNGGVLREISRHSSGETMDICEM 819
            P  +K    GGG+GGVLRE++RHSS E +DICE+
Sbjct:  126 PNPKKVLVIGGGDGGVLREVARHSSIEKIDICEI 159          
BLAST of EY716918 vs. ExPASy Swiss-Prot
Match: SPD2_HYONI (Spermidine synthase 2 OS=Hyoscyamus niger PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.191e-51
Identity = 85/99 (85.86%), Postives = 91/99 (91.92%), Query Frame = 3
Query:  447 MEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLWSIPNPKKVLVI 743
            ME   N +   ISS++PGWFSEISP+WPGEAHSLKVEKILFQGKSDYQNV+VFQSSTYGKVL+LDGVIQLTERDECAYQEMITHLPL SIPNPKKVLVI
Sbjct:    1 MEEQGNNESAYISSILPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVVVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVI 99          

HSP 2 Score: 47.3654 bits (111), Expect = 1.191e-51
Identity = 22/36 (61.11%), Postives = 27/36 (75.00%), Query Frame = 1
Query:  718 PTRRKFW*FGGGNGGVLREISRHSSGETMDICEMIK 825
            P  +K    GGG+GGVLRE+SRHSS E +DICE+ K
Sbjct:   91 PNPKKVLVIGGGDGGVLREVSRHSSVEQIDICEIDK 126          
The following BLAST results are available for this feature:
BLAST of EY716918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
SPD2_ARATH6.005e-5773.72Spermidine synthase 2 OS=Arabidopsis thaliana GN=S... [more]
SPDE_SOLLC8.516e-5676.56Spermidine synthase OS=Solanum lycopersicum GN=SPD... [more]
SPD2_DATST4.550e-5483.33Spermidine synthase 2 OS=Datura stramonium PE=2 SV... [more]
SPD1_PEA5.929e-5476.80Spermidine synthase 1 OS=Pisum sativum GN=SPDSYN1 ... [more]
SPD1_ARATH1.007e-5373.64Spermidine synthase 1 OS=Arabidopsis thaliana GN=S... [more]
SPD1_DATST8.409e-5388.89Spermidine synthase 1 OS=Datura stramonium PE=2 SV... [more]
SPDE_NICSY1.862e-5283.49Spermidine synthase OS=Nicotiana sylvestris PE=2 S... [more]
SPD1_HYONI2.427e-5280.91Spermidine synthase 1 OS=Hyoscyamus niger PE=2 SV=... [more]
SPD2_PEA7.002e-5271.76Spermidine synthase 2 OS=Pisum sativum GN=SPDSYN2 ... [more]
SPD2_HYONI1.191e-5185.86Spermidine synthase 2 OS=Hyoscyamus niger PE=2 SV=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-073-A05-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY716918 ID=EY716918; Name=EY716918; organism=Citrus sinensis; type=EST; length=892bp
CCACGCGTCCGGGCATATATAAAGCGTTGCCCACCACCTTCGCACACTTT
AAACCAAGCGCAAGCGGCAGCAAACGCAAACGCTAACACAAACACGAGCC
GCATCTTTGCGAAGCCAGATTTGTAACTTTTTATAATATATTCTCCCACC
ACTCGCAGCTTGCAATTTTTTATTTTAATTTTTCTTTTTATATATAAAAG
GCAAAGAGGGACGGAGATTCTGTTTGTGTGGCGCCTCTTGACTCCCGAGA
GTTGCCTCGGCAGTCAGTTTTCATTAGAAGTGAAGTGATTGTTGGGTTTT
CGGGGGTTTGAAAGCAGAAAGAATAATCAATAATAATATCTGTTATGGCG
GAAACTGGGTCTGCTGCTGCCACTGATTTGCCGTTGAAGAGGCCGAGAGA
TGACGGAGAGAAGGAGGCTAATAACAACAATAACGGGAGTGTGTTGATGG
AGATGGACTCTAACAAACAGCCTGATTGTATCTCCTCTGTTATTCCTGGC
TGGTTCTCTGAAATCAGCCCAATGTGGCCCGGTGAGGCACATTCATTGAA
GGTTGAGAAAATCTTGTTTCAAGGGAAGTCTGATTACCAGAATGTCATGG
TCTTTCAGTCTTCAACATATGGGAAGGTTCTTATTTTGGATGGGGTGATT
CAGCTTACTGAGAGGGATGAATGTGCATATCAAGAAATGATCACTCACCT
TCCACTTTGGTCAATTCCCAACCCGAAGAAAGTTCTGGTAATTTGGTGGA
GGAAATGGTGGGGTCTTGCGGGAAATATCTCGTCATTCTTCTGGTGAGAC
GATGGATATCTGTGAAATGATAAAAGGGAGGTGATGGCTCTAAACAATTT
TCCCTGAAGGAACTGGTGGGTTTAAGGATCTCCTGGGACACT
back to top