CX301770

Overview
NameCX301770
Unique NameCX301770
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig161 contig Csv1_Contig161:638..1237. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX301770 vs. ExPASy Swiss-Prot
Match: ATPO_IPOBA (ATP synthase subunit O, mitochondrial OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.216e-14
Identity = 40/60 (66.67%), Postives = 46/60 (76.67%), Query Frame = 3 
Query:    3 ELKETLQETLXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREPIHF 182
            ELK TLQE +            DP+ILGGLVVEFGQKVFDMSI++RARQMERFLREP++F
Sbjct:  185 ELKATLQEMVGQGKSVQIEQKIDPTILGGLVVEFGQKVFDMSIRTRARQMERFLREPLNF 244
[Close]
BLAST of CX301770 vs. ExPASy Swiss-Prot
Match: ATPO_ARATH (ATP synthase subunit O, mitochondrial OS=Arabidopsis thaliana GN=At5g13450 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.649e-12
Identity = 36/63 (57.14%), Postives = 42/63 (66.67%), Query Frame = 3 
Query:    3 ELKETLQETLXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREPIHFGTL 191
            EL ETLQE +            DPSI GGL+VEF QKV DMSI++RA+QMER LREP+ F  L
Sbjct:  176 ELTETLQEIIGAGKKITVEQKIDPSIYGGLIVEFQQKVLDMSIRTRAQQMERLLREPVDFNNL 238
The following BLAST results are available for this feature:
BLAST of CX301770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ATPO_IPOBA1.216e-1466.67ATP synthase subunit O, mitochondrial OS=Ipomoea b... [more]
ATPO_ARATH5.649e-1257.14ATP synthase subunit O, mitochondrial OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionC08013D09SK PhyRootSw1 Citrus sinensis cDNA clone C08013D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301770 ID=CX301770; Name=CX301770; organism=Citrus sinensis; type=EST; length=599bp
GAGAGTTGAAAGAGACACTGCAAGAGACACTTGGCCAAGGGAAGAAAGTC
AAGGTTGAACAGAAGGTTGATCCTAGCATTCTTGGTGGGCTCGTAGTAGA
GTTTGGGCAAAAGGTGTTTGACATGTCCATTAAGTCTAGGGCGCGGCAGA
TGGAGAGGTTCCTACGTGAGCCCATTCATTTTGGCACCCTCTAAAAAGGC
TGCCACAGCCCCAGGGCGCAAATTTTTAAGATGATTATGCAACAACTGGA
ACGCTCCAAGAAGTAAAAGAACCATTCAAGCTCTTGTTTGATGCTGTTTG
CTTGTGCTCCGCCATTTCTGAATGAATTGAATCATTGGCAAAATAAAATT
CACATCTTGATCACTTTGCTTTCATGGCAAATGGTTCTGATGGACATCAA
CATTTTTTGTTTGGGTTTCGGTTCGGACCATTATCTTTTAAGGGTATAAT
TTGTTTGTTCAAATAATTACTCGGTCCTGCACATGATACGGTTCTCAAGG
ACAAAAGCTCTTTTTATGAACATACTGTTGTTAGACAGTGTTCGCATTTT
ATTAATATGTGCTCTTGATCCTCTCTTAAGGCAAAAAAAAAAAAAAAAA
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