CX301767

Overview
NameCX301767
Unique NameCX301767
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3233 contig Csv1_Contig3233:912..1621. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX301767 vs. ExPASy Swiss-Prot
Match: DECR2_ARATH (Peroxisomal 2,4-dienoyl-CoA reductase OS=Arabidopsis thaliana GN=At3g12800 PE=2 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 2.309e-80
Identity = 144/199 (72.36%), Postives = 162/199 (81.41%), Query Frame = 1
Query:    1 NFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXX-ILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKLAPDEINSKARDYMPLYKLGEKWDIAMAALYLTSDTGKYVNGTTLIVDGGLWLSRPRHLPKDAVKQLSRTVEKRSRDKPIGVPKSKL 594
            NFL +AEDLSPNGFRTV+DID+VGTF MCH ALKYLKK             I+NISATLHYTASWYQIH           TRNLALEWG DYDIRVNGIAPGPIG TPGM+KL P+EI +K R+YMPLYK+GEKWDIAMAALYL+ D+GKYV+G T++VDGGLWLS+PRHLPK+AVKQLSR VEKRSR KP+G+P SKL
Sbjct:  100 NFLAAAEDLSPNGFRTVLDIDAVGTFNMCHAALKYLKKGAPGRDSSSGGGSIINISATLHYTASWYQIHVSAAKAAVDATTRNLALEWGTDYDIRVNGIAPGPIGGTPGMSKLVPEEIENKTREYMPLYKVGEKWDIAMAALYLSCDSGKYVSGLTMVVDGGLWLSKPRHLPKEAVKQLSRAVEKRSRAKPVGLPTSKL 298          
BLAST of CX301767 vs. ExPASy Swiss-Prot
Match: DECR2_MOUSE (Peroxisomal 2,4-dienoyl-CoA reductase OS=Mus musculus GN=Decr2 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.228e-24
Identity = 68/179 (37.99%), Postives = 97/179 (54.19%), Query Frame = 1
Query:    1 NFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKLAPDEINSKARDYM-PLYKLGEKWDIAMAALYLTSDTGKYVNGTTLIVDGGLWLSRPRHLPKDAVKQL 534
            NFL  A  LS N F+TV+DID++GTF +     K   +            I+NI+ATL       Q+H          +TR+LA+EWG   +IRVN +APG I  T G+ +L     +SK + +  P+ +LG K +IA + LYL S    YV+G  L+VDGG W++ P     + +KQL
Sbjct:  117 NFLCPASALSFNAFKTVVDIDTIGTFNVSSVLYKKFFRDHGGV-------IVNITATLSMRGQVLQLHAGAAKAAVDAMTRHLAVEWGPQ-NIRVNSLAPGAISGTEGLRRLRGSNASSKLKHFSNPIPRLGTKTEIAHSVLYLASPLASYVSGIVLVVDGGSWMTFP-----NGIKQL 282          
BLAST of CX301767 vs. ExPASy Swiss-Prot
Match: SPS19_YEAST (Peroxisomal 2,4-dienoyl-CoA reductase SPS19 OS=Saccharomyces cerevisiae GN=SPS19 PE=1 SV=4)

HSP 1 Score: 110.153 bits (274), Expect = 1.165e-23
Identity = 65/163 (39.88%), Postives = 88/163 (53.99%), Query Frame = 1
Query:    1 NFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKLAPDEINSKARDYMPLYKLGEKWDIAMAALYLTSDTGKYVNGTTLIVDGGLW 489
            NF+    +LSPN F++V+DID +G+F      LK LKK            IL +SAT HY    +Q H          + +NLA+E G    IR N IAPG I +T G+ +LA  +   KA   +PL +LG   DIA + +Y+ S    YV GT L+VDGG+W
Sbjct:  116 NFVCDFANLSPNAFKSVVDIDLLGSFNTAKACLKELKKSKGS--------ILFVSATFHYYGVPFQGHVGAAKAGIDALAKNLAVELGP-LGIRSNCIAPGAIDNTEGLKRLAGKKYKEKALAKIPLQRLGSTRDIAESTVYIFSPAASYVTGTVLVVDGGMW 269          
BLAST of CX301767 vs. ExPASy Swiss-Prot
Match: DECR2_PONAB (Peroxisomal 2,4-dienoyl-CoA reductase OS=Pongo abelii GN=DECR2 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.780e-23
Identity = 67/168 (39.88%), Postives = 87/168 (51.79%), Query Frame = 1
Query:    1 NFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKLA-PDEINSKARDYMPLYKLGEKWDIAMAALYLTSDTGKYVNGTTLIVDGGLWLSRP 501
            NFL  A  LS N F+TVMDID+ GTF +     +   +            I+NI+ATL       Q+H          +TR+LA+EWG   +IRVN +APGPI  T G+ +L  P    S      PL +LG K +IA + LYL S    YV G  L+ DGG WL+ P
Sbjct:  117 NFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGV-------IVNITATLGNRGQALQVHAGSAKAAVDAMTRHLAVEWGPQ-NIRVNSLAPGPISGTEGLRRLGGPQASLSTKVTASPLQRLGNKTEIAHSVLYLASPLASYVTGAVLVADGGAWLTFP 276          
BLAST of CX301767 vs. ExPASy Swiss-Prot
Match: DECR2_HUMAN (Peroxisomal 2,4-dienoyl-CoA reductase OS=Homo sapiens GN=DECR2 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.780e-23
Identity = 67/168 (39.88%), Postives = 87/168 (51.79%), Query Frame = 1
Query:    1 NFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKLA-PDEINSKARDYMPLYKLGEKWDIAMAALYLTSDTGKYVNGTTLIVDGGLWLSRP 501
            NFL  A  LS N F+TVMDID+ GTF +     +   +            I+NI+ATL       Q+H          +TR+LA+EWG   +IRVN +APGPI  T G+ +L  P    S      PL +LG K +IA + LYL S    YV G  L+ DGG WL+ P
Sbjct:  117 NFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGV-------IVNITATLGNRGQALQVHAGSAKAAVDAMTRHLAVEWGPQ-NIRVNSLAPGPISGTEGLRRLGGPQASLSTKVTASPLQRLGNKTEIAHSVLYLASPLASYVTGAVLVADGGAWLTFP 276          
BLAST of CX301767 vs. ExPASy Swiss-Prot
Match: DECR2_RAT (Peroxisomal 2,4-dienoyl-CoA reductase OS=Rattus norvegicus GN=Decr2 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.549e-23
Identity = 65/172 (37.79%), Postives = 95/172 (55.23%), Query Frame = 1
Query:    1 NFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKLAPDEINSKARDYM--PLYKLGEKWDIAMAALYLTSDTGKYVNGTTLIVDGGLWLSRPRHL 510
            NFL  A  LS N F+TV+DID++GTF +     +   +            I+NI+ATL       Q+H          +TR+LA+EWG   +IRVN +APG I  T G+ +L   + +SK + Y+  P+ +LG K +IA + LYL S    YV+G  L+VDGG W++ P  +
Sbjct:  117 NFLCPASALSFNAFKTVVDIDTLGTFNVSRVLYEKFFRDHGGV-------IVNITATLSMRGQVLQLHAGAAKAAVDAMTRHLAVEWGPQ-NIRVNSLAPGAISGTEGLRRLGGPKASSKFK-YLSSPIPRLGTKTEIAHSVLYLASPLASYVSGIVLVVDGGSWMTLPNDI 279          
BLAST of CX301767 vs. ExPASy Swiss-Prot
Match: DECR2_DANRE (Peroxisomal 2,4-dienoyl-CoA reductase OS=Danio rerio GN=decr2 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.197e-22
Identity = 63/166 (37.95%), Postives = 85/166 (51.20%), Query Frame = 1
Query:    1 NFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKLAPDEINSKARDY-MPLYKLGEKWDIAMAALYLTSDTGKYVNGTTLIVDGGLWLS 495
            NFL  A  LS N F+TVM+ID++GTF          K             I+NISATL Y     Q+H          +TR+LA+EWG    +RVN +APGPI  T G  +L      +    + +PL + G K ++A A L+L S    YV G+ L+ DGG WL+
Sbjct:  124 NFLCPATSLSFNAFKTVMEIDTMGTFNTS-------KVIYDKWFKDHGGSIVNISATLGYRGQALQVHAGSAKAANDAMTRHLAVEWGPS-GVRVNTVAPGPISGTEGYRRLGGSHAETAGAFHSIPLQRAGNKTEMAHAVLFLASRASSYVTGSVLVADGGAWLT 281          
BLAST of CX301767 vs. ExPASy Swiss-Prot
Match: FADH_BACSU (Probable 2,4-dienoyl-CoA reductase OS=Bacillus subtilis GN=fadH PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.859e-21
Identity = 61/166 (36.75%), Postives = 87/166 (52.41%), Query Frame = 1
Query:    1 NFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKLAPDE-INSKARDYMPLYKLGEKWDIAMAALYLTSDTGKYVNGTTLIVDGGLWLS 495
            NF+  AE L+PNG++ V++I   GTF     A ++               ILN++AT  + A    +H          +TR LA+EWG+ Y IR N IAPGPI  T G  KL   E   ++  + +PL +LG   +IA  A +L SD   Y+NG  + +DGG WL+
Sbjct:   91 NFICPAEKLTPNGWKAVIEIVLNGTFFCSQAAARH------WIDQKQQGVILNMAATYAWGAGAGVVHSAAAKAGVLSLTRTLAVEWGSKYGIRTNAIAPGPIERTGGAEKLFESEKAMARTMNSVPLGRLGTPEEIAALAAFLLSDEASYINGDCITMDGGQWLN 250          
BLAST of CX301767 vs. ExPASy Swiss-Prot
Match: DHG_BACME (Glucose 1-dehydrogenase OS=Bacillus megaterium PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 49/160 (30.63%), Postives = 73/160 (45.62%), Query Frame = 1
Query:   10 VSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASW-YQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKLAPDEINSKARDYMPLYKLGEKWDIAMAALYLTSDTGKYVNGTTLIVDGGL 486
            VS+ ++S + +  V+D +  G F    EA+KY  +            ++N+S+ +H    W   +H          +T  LALE+ A   IRVN I PG I       K A  E  +     +P+  +GE  +IA  A +L S    YV G TL  DGG+
Sbjct:   99 VSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGT------VINMSS-VHEKIPWPLFVHYAASKGGMKLMTETLALEY-APKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIPMGYIGEPEEIAAVAAWLASSEASYVTGITLFADGGM 250          
BLAST of CX301767 vs. ExPASy Swiss-Prot
Match: DHG1_BACME (Glucose 1-dehydrogenase 1 OS=Bacillus megaterium GN=gdhI PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 49/160 (30.63%), Postives = 73/160 (45.62%), Query Frame = 1
Query:   10 VSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASW-YQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKLAPDEINSKARDYMPLYKLGEKWDIAMAALYLTSDTGKYVNGTTLIVDGGL 486
            VS+ ++S + +  V+D +  G F    EA+KY  +            ++N+S+ +H    W   +H          +T  LALE+ A   IRVN I PG I       K A  E  +     +P+  +GE  +IA  A +L S    YV G TL  DGG+
Sbjct:   99 VSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGT------VINMSS-VHEKIPWPLFVHYAASKGGMKLMTETLALEY-APKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIPMGYIGEPEEIAAVAAWLASSEASYVTGITLFADGGM 250          
The following BLAST results are available for this feature:
BLAST of CX301767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
DECR2_ARATH2.309e-8072.36Peroxisomal 2,4-dienoyl-CoA reductase OS=Arabidops... [more]
DECR2_MOUSE5.228e-2437.99Peroxisomal 2,4-dienoyl-CoA reductase OS=Mus muscu... [more]
SPS19_YEAST1.165e-2339.88Peroxisomal 2,4-dienoyl-CoA reductase SPS19 OS=Sac... [more]
DECR2_PONAB5.780e-2339.88Peroxisomal 2,4-dienoyl-CoA reductase OS=Pongo abe... [more]
DECR2_HUMAN5.780e-2339.88Peroxisomal 2,4-dienoyl-CoA reductase OS=Homo sapi... [more]
DECR2_RAT7.549e-2337.79Peroxisomal 2,4-dienoyl-CoA reductase OS=Rattus no... [more]
DECR2_DANRE2.197e-2237.95Peroxisomal 2,4-dienoyl-CoA reductase OS=Danio rer... [more]
FADH_BACSU1.859e-2136.75Probable 2,4-dienoyl-CoA reductase OS=Bacillus sub... [more]
DHG_BACME2.278e-1130.63Glucose 1-dehydrogenase OS=Bacillus megaterium PE=... [more]
DHG1_BACME2.278e-1130.63Glucose 1-dehydrogenase 1 OS=Bacillus megaterium G... [more]
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Properties
Property NameValue
Genbank descriptionC08013D06SK PhyRootSw1 Citrus sinensis cDNA clone C08013D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301767 ID=CX301767; Name=CX301767; organism=Citrus sinensis; type=EST; length=710bp
AACTTTCTTGTATCAGCTGAGGATTTGTCCCCTAATGGGTTTCGAACAGT
TATGGATATTGATTCTGTCGGCACATTCACAATGTGCCATGAAGCACTTA
AATATCTTAAAAAAGGTGGACCTGGGAGAAGCTCAGCTGGTGGTGGATCC
ATTTTGAACATTAGTGCTACTTTACATTATACAGCTTCTTGGTACCAAAT
ACATGTAGCTGCAGCCAAGGCAGCTGTTGATGCCATTACCAGAAACTTGG
CACTGGAATGGGGAGCTGACTATGATATTCGAGTCAATGGAATTGCCCCC
GGCCCCATCGGTGATACCCCGGGCATGAATAAACTTGCACCTGATGAGAT
TAATAGCAAAGCTCGAGACTATATGCCGTTATACAAACTTGGGGAGAAAT
GGGATATTGCTATGGCTGCTCTGTACCTTACTTCTGATACAGGGAAATAT
GTCAATGGGACAACTCTTATAGTCGATGGAGGACTTTGGCTGAGCCGGCC
TCGTCATTTGCCAAAAGATGCTGTTAAGCAGCTTTCTCGAACTGTGGAGA
AGAGATCTAGGGATAAACCCATTGGTGTTCCAAAGAGCAAGCTCTGAACC
AGTTCAACAGGGTCCAGGCATGCAATTGTTTACATTTGGGTTCTAAGCAG
CGAGCTTATACCACTCAATAAAATCACTTACGGAGTTGCCGATGCTGTAG
TTTACATTTT
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