CX301766

Overview
NameCX301766
Unique NameCX301766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length497
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301766 vs. ExPASy Swiss-Prot
Match: CGL_PIG (Cystathionine gamma-lyase OS=Sus scrofa GN=CTH PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.566e-13
Identity = 35/61 (57.38%), Postives = 48/61 (78.69%), Query Frame = 3
Query:   27 SLGAVESLASSPALMTHTAVPQAAREAIGLTDSLIRLSIGIEDSEDLIADLKQALDKAYQT 209
            SLG  ESLA  PA+MTH++VP++ RE +G+ D+LIRLS+G+ED +DL+ DL QAL  A+ T
Sbjct:  340 SLGGYESLAELPAIMTHSSVPKSDREVLGIRDTLIRLSVGLEDKQDLMDDLDQALKAAHPT 400          
BLAST of CX301766 vs. ExPASy Swiss-Prot
Match: CYS3_YEAST (Cystathionine gamma-lyase OS=Saccharomyces cerevisiae GN=CYS3 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 7.465e-13
Identity = 33/58 (56.90%), Postives = 46/58 (79.31%), Query Frame = 3
Query:   27 SLGAVESLASSPALMTHTAVPQAAREAIGLTDSLIRLSIGIEDSEDLIADLKQALDKA 200
            SLG +ESL   PA+MTH  +P+ AREA G+ D L+R+S+GIED++DL+ D+KQAL +A
Sbjct:  335 SLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA 392          
BLAST of CX301766 vs. ExPASy Swiss-Prot
Match: CGL_DICDI (Cystathionine gamma-lyase OS=Dictyostelium discoideum GN=cysA PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.465e-13
Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = 3
Query:   12 FGTRVSLGAVESLASSPALMTHTAVPQAAREAIGLTDSLIRLSIGIEDSEDLIADLKQALDK 197
            F    SLG VESL   P++MTH +VP   R  +G++D+LIRLS+GIED  DL+AD+ QALDK
Sbjct:  325 FALAESLGGVESLIELPSVMTHASVPAEERAKLGISDTLIRLSVGIEDINDLLADISQALDK 386          
BLAST of CX301766 vs. ExPASy Swiss-Prot
Match: CGL_BOVIN (Cystathionine gamma-lyase OS=Bos taurus GN=CTH PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.465e-13
Identity = 34/58 (58.62%), Postives = 46/58 (79.31%), Query Frame = 3
Query:   27 SLGAVESLASSPALMTHTAVPQAAREAIGLTDSLIRLSIGIEDSEDLIADLKQALDKA 200
            SLG  ESLA  PA+MTH +VP++ RE +G++D+LIRLS+G+ED +DL+ DL QAL  A
Sbjct:  340 SLGGYESLAELPAIMTHASVPKSDREVLGISDTLIRLSVGLEDKQDLLDDLDQALKAA 397          
BLAST of CX301766 vs. ExPASy Swiss-Prot
Match: METC_LACLC (Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris GN=metC PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.749e-13
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 3
Query:   27 SLGAVESLASSPALMTHTAVPQAAREAIGLTDSLIRLSIGIEDSEDLIADLKQALDK 197
            SLG VESL   PA+MTH ++P+  RE IG+ D LIRLS+G+E  EDL+ DLK+AL+K
Sbjct:  323 SLGGVESLIEVPAVMTHASIPKELREEIGIKDGLIRLSVGVEALEDLLTDLKEALEK 379          
BLAST of CX301766 vs. ExPASy Swiss-Prot
Match: MCCB_BACSU (Cystathionine gamma-lyase OS=Bacillus subtilis GN=mccB PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.273e-12
Identity = 34/56 (60.71%), Postives = 45/56 (80.36%), Query Frame = 3
Query:   27 SLGAVESLASSPALMTHTAVPQAAREAIGLTDSLIRLSIGIEDSEDLIADLKQALD 194
            SLGAVESL S PA MTH ++P+  R  +G+TD LIR+S+GIED+EDL+ D+ QAL+
Sbjct:  322 SLGAVESLISVPARMTHASIPRERRLELGITDGLIRISVGIEDAEDLLEDIGQALE 377          
BLAST of CX301766 vs. ExPASy Swiss-Prot
Match: METC_LACLM (Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=metC PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.663e-12
Identity = 33/57 (57.89%), Postives = 44/57 (77.19%), Query Frame = 3
Query:   27 SLGAVESLASSPALMTHTAVPQAAREAIGLTDSLIRLSIGIEDSEDLIADLKQALDK 197
            SLG VESL   PA+MTH ++P+  RE IG+ D LIRLS+G+E  EDL+ D+K+AL+K
Sbjct:  323 SLGGVESLIEVPAVMTHASIPKELREEIGIKDGLIRLSVGVEAIEDLLTDIKEALEK 379          
BLAST of CX301766 vs. ExPASy Swiss-Prot
Match: METC_LACLA (Cystathionine beta-lyase OS=Lactococcus lactis subsp. lactis GN=metC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.663e-12
Identity = 33/57 (57.89%), Postives = 44/57 (77.19%), Query Frame = 3
Query:   27 SLGAVESLASSPALMTHTAVPQAAREAIGLTDSLIRLSIGIEDSEDLIADLKQALDK 197
            SLG VESL   PA+MTH ++P+  RE IG+ D LIRLS+G+E  EDL+ D+K+AL+K
Sbjct:  323 SLGGVESLIEVPAVMTHASIPKELREEIGIKDGLIRLSVGVEAIEDLLTDIKEALEK 379          
BLAST of CX301766 vs. ExPASy Swiss-Prot
Match: CGL_RAT (Cystathionine gamma-lyase OS=Rattus norvegicus GN=Cth PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.172e-12
Identity = 34/64 (53.12%), Postives = 46/64 (71.88%), Query Frame = 3
Query:   12 FGTRVSLGAVESLASSPALMTHTAVPQAAREAIGLTDSLIRLSIGIEDSEDLIADLKQALDKAY 203
            F    SLG  ESLA  PA+MTH +VP+  R  +G++D+LIRLS+G+ED +DL+ DL QAL  A+
Sbjct:  334 FALAESLGGYESLAELPAIMTHASVPEKDRATLGISDTLIRLSVGLEDEKDLLEDLGQALKAAH 397          
BLAST of CX301766 vs. ExPASy Swiss-Prot
Match: METB_HELPJ (Cystathionine gamma-synthase OS=Helicobacter pylori J99 GN=metB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.837e-12
Identity = 34/57 (59.65%), Postives = 41/57 (71.93%), Query Frame = 3
Query:   27 SLGAVESLASSPALMTHTAVPQAAREAIGLTDSLIRLSIGIEDSEDLIADLKQALDK 197
            SLG VESL   PALMTH  +P+A REA G+ D L+RLS+GIE  +DL+ DL QA  K
Sbjct:  322 SLGGVESLVGIPALMTHACIPKAQREAAGIRDGLVRLSVGIEHEQDLLEDLDQAFAK 378          
The following BLAST results are available for this feature:
BLAST of CX301766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
CGL_PIG2.566e-1357.38Cystathionine gamma-lyase OS=Sus scrofa GN=CTH PE=... [more]
CYS3_YEAST7.465e-1356.90Cystathionine gamma-lyase OS=Saccharomyces cerevis... [more]
CGL_DICDI7.465e-1356.45Cystathionine gamma-lyase OS=Dictyostelium discoid... [more]
CGL_BOVIN7.465e-1358.62Cystathionine gamma-lyase OS=Bos taurus GN=CTH PE=... [more]
METC_LACLC9.749e-1359.65Cystathionine beta-lyase OS=Lactococcus lactis sub... [more]
MCCB_BACSU1.273e-1260.71Cystathionine gamma-lyase OS=Bacillus subtilis GN=... [more]
METC_LACLM1.663e-1257.89Cystathionine beta-lyase OS=Lactococcus lactis sub... [more]
METC_LACLA1.663e-1257.89Cystathionine beta-lyase OS=Lactococcus lactis sub... [more]
CGL_RAT2.172e-1253.13Cystathionine gamma-lyase OS=Rattus norvegicus GN=... [more]
METB_HELPJ2.837e-1259.65Cystathionine gamma-synthase OS=Helicobacter pylor... [more]

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Properties
Property NameValue
Genbank descriptionC08013D05SK PhyRootSw1 Citrus sinensis cDNA clone C08013D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301766 ID=CX301766; Name=CX301766; organism=Citrus sinensis; type=EST; length=497bp
CTCGTGCCGAATTCGGCACGAGGGTCTCGTTAGGTGCAGTTGAATCATTG
GCTAGTAGTCCTGCTTTAATGACTCATACTGCTGTTCCACAAGCTGCCCG
TGAAGCCATTGGTTTAACTGATAGTTTGATTCGTTTATCAATTGGTATTG
AAGATTCTGAAGATTTGATTGCCGATTTAAAGCAAGCTTTAGATAAGGCT
TACCAAACCTACCAACAAAATGGTTCCAAGTAGAACGTCTTCGTCGTCTT
CTCCTCCACAAAACAGAGAGTGGTCAAAAGACAGTTGTAAGTCTAGATTA
GTTGGATGTAGTGTAATTAAAAGATAGTAGTGTTTTTTCTTCCTCTTTTC
CTTGTTCGTTCTTTCCCTGTAGGATTTGTGATTAAGATGAAAGGTGGTAG
AAGTTATCTATGATTTTGCTCTCCTTAATAGTACTTATTGTATCATAACT
AATTTGCATGCTGCCTTTGCAGAGATTTGGAAAAAAAAAAAAAAAAA
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