CX301755

Overview
NameCX301755
Unique NameCX301755
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length476
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2841 contig Csv1_Contig2841:379..854. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX301755 vs. ExPASy Swiss-Prot
Match: RL193_ARATH (60S ribosomal protein L19-3 OS=Arabidopsis thaliana GN=RPL19C PE=2 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 1.757e-29
Identity = 64/66 (96.97%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    1 DRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLFDQFEAKRAKNKASRERKIARREERL 198
            DRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTL DQFEAKRAKNKASRERK ARREERL
Sbjct:  116 DRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERL 181
[Close]
BLAST of CX301755 vs. ExPASy Swiss-Prot
Match: RL191_ARATH (60S ribosomal protein L19-1 OS=Arabidopsis thaliana GN=RPL19A PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 8.718e-29
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    1 DRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLFDQFEAKRAKNKASRERKIARREERL 198
            D+HMYHDMYM+VKGNVFKNKRVLMESIHKSKAEKAREKTL DQFEAKRAKNKASRERK ARREERL
Sbjct:  116 DKHMYHDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERL 181
[Close]
BLAST of CX301755 vs. ExPASy Swiss-Prot
Match: RL192_ARATH (60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.139e-28
Identity = 62/66 (93.94%), Postives = 62/66 (93.94%), Query Frame = 1 
Query:    1 DRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLFDQFEAKRAKNKASRERKIARREERL 198
            DRHMYHDMYMKVKGNVFKNKRVLMESIHK KAEKAREKTL DQFEAKR KNKASRERK ARREERL
Sbjct:  116 DRHMYHDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRERKFARREERL 181
[Close]
BLAST of CX301755 vs. ExPASy Swiss-Prot
Match: RL19_XENLA (60S ribosomal protein L19 OS=Xenopus laevis GN=rpl19 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.822e-18
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    1 DRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLFDQFEAKRAKNKASRERKIARREERL 198
            DRHMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L DQ EA+R+K K +R+    RREERL
Sbjct:  116 DRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARK----RREERL 177
[Close]
BLAST of CX301755 vs. ExPASy Swiss-Prot
Match: RL19_RAT (60S ribosomal protein L19 OS=Rattus norvegicus GN=Rpl19 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.822e-18
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    1 DRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLFDQFEAKRAKNKASRERKIARREERL 198
            DRHMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L DQ EA+R+K K +R+    RREERL
Sbjct:  116 DRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARK----RREERL 177
[Close]
BLAST of CX301755 vs. ExPASy Swiss-Prot
Match: RL19_PONAB (60S ribosomal protein L19 OS=Pongo abelii GN=RPL19 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.822e-18
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    1 DRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLFDQFEAKRAKNKASRERKIARREERL 198
            DRHMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L DQ EA+R+K K +R+    RREERL
Sbjct:  116 DRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARK----RREERL 177
[Close]
BLAST of CX301755 vs. ExPASy Swiss-Prot
Match: RL19_MOUSE (60S ribosomal protein L19 OS=Mus musculus GN=Rpl19 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.822e-18
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    1 DRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLFDQFEAKRAKNKASRERKIARREERL 198
            DRHMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L DQ EA+R+K K +R+    RREERL
Sbjct:  116 DRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARK----RREERL 177
[Close]
BLAST of CX301755 vs. ExPASy Swiss-Prot
Match: RL19_MACFA (60S ribosomal protein L19 OS=Macaca fascicularis GN=RPL19 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.822e-18
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    1 DRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLFDQFEAKRAKNKASRERKIARREERL 198
            DRHMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L DQ EA+R+K K +R+    RREERL
Sbjct:  116 DRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARK----RREERL 177
[Close]
BLAST of CX301755 vs. ExPASy Swiss-Prot
Match: RL19_HUMAN (60S ribosomal protein L19 OS=Homo sapiens GN=RPL19 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.822e-18
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    1 DRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLFDQFEAKRAKNKASRERKIARREERL 198
            DRHMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L DQ EA+R+K K +R+    RREERL
Sbjct:  116 DRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARK----RREERL 177
[Close]
BLAST of CX301755 vs. ExPASy Swiss-Prot
Match: RL19_BOVIN (60S ribosomal protein L19 OS=Bos taurus GN=RPL19 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.822e-18
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    1 DRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLFDQFEAKRAKNKASRERKIARREERL 198
            DRHMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L DQ EA+R+K K +R+    RREERL
Sbjct:  116 DRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARK----RREERL 177
The following BLAST results are available for this feature:
BLAST of CX301755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RL193_ARATH1.757e-2996.9760S ribosomal protein L19-3 OS=Arabidopsis thalian... [more]
RL191_ARATH8.718e-2993.9460S ribosomal protein L19-1 OS=Arabidopsis thalian... [more]
RL192_ARATH1.139e-2893.9460S ribosomal protein L19-2 OS=Arabidopsis thalian... [more]
RL19_XENLA1.822e-1868.1860S ribosomal protein L19 OS=Xenopus laevis GN=rpl... [more]
RL19_RAT1.822e-1868.1860S ribosomal protein L19 OS=Rattus norvegicus GN=... [more]
RL19_PONAB1.822e-1868.1860S ribosomal protein L19 OS=Pongo abelii GN=RPL19... [more]
RL19_MOUSE1.822e-1868.1860S ribosomal protein L19 OS=Mus musculus GN=Rpl19... [more]
RL19_MACFA1.822e-1868.1860S ribosomal protein L19 OS=Macaca fascicularis G... [more]
RL19_HUMAN1.822e-1868.1860S ribosomal protein L19 OS=Homo sapiens GN=RPL19... [more]
RL19_BOVIN1.822e-1868.1860S ribosomal protein L19 OS=Bos taurus GN=RPL19 P... [more]

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Properties
Property NameValue
Genbank descriptionC08013C04SK PhyRootSw1 Citrus sinensis cDNA clone C08013C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301755 ID=CX301755; Name=CX301755; organism=Citrus sinensis; type=EST; length=476bp
GACAGACACATGTATCATGACATGTACATGAAGGTTAAGGGTAATGTATT
TAAGAATAAGCGAGTTTTGATGGAGAGTATCCACAAGTCGAAGGCTGAGA
AGGCTAGGGAGAAAACTTTGTTTGACCAGTTTGAGGCCAAACGGGCTAAG
AACAAGGCAAGCAGGGAGAGGAAAATTGCTAGGAGGGAGGAACGTTTAGC
CCAGGGGCCTGGAGGAGCACCAACAACTGCACCACCTGCTGCTGCATCTC
AGTCAACTGAGGTACCCAAAAAATCTAAGAAGTAAAACGCCTGACAAAGC
AGTGAAGGATTTTGACCGTAGGTAGCTTGCGTCCTCTGTTACTGTGGCAG
AGCAGTTTTGTTAAAGGAATGTTCTTTTTGGTTTCTTTTGGACCTTGTTA
CTTAAATATTGCAGATGAAAGGAGGTTTCTTAATACTTGCTTAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA
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