CX301749

Overview
NameCX301749
Unique NameCX301749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX301749_ssr487 microsatellite CX301749_ssr487:487..498. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX301749 vs. ExPASy Swiss-Prot
Match: UPTG2_SOLTU (Alpha-1,4-glucan-protein synthase [UDP-forming] 2 OS=Solanum tuberosum GN=UPTG2 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.654e-47
Identity = 85/99 (85.86%), Postives = 94/99 (94.95%), Query Frame = 1
Query:    1 VICDHLNLGVKTGLPYIFHSKASNPFVNLKKEYKGIFWQEDIIPFFQAVTLPKECTTVQECYIELSKQVKEKLSKVDPYFDKLADAMVTWIEAWDELNP 297
            VICDHL LGVKTGLPYI+HSKASNPFVNLKKEYKGI+WQE+IIPF Q+ TLPK+CT+VQ+CY+ELSKQVKEKLS +DPYF KLADAMVTWIEAWDELNP
Sbjct:  249 VICDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIYWQEEIIPFSQSATLPKDCTSVQQCYLELSKQVKEKLSTIDPYFTKLADAMVTWIEAWDELNP 347          
BLAST of CX301749 vs. ExPASy Swiss-Prot
Match: UPTG1_SOLTU (Alpha-1,4-glucan-protein synthase [UDP-forming] 1 OS=Solanum tuberosum GN=UPTG1 PE=1 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 3.686e-47
Identity = 84/98 (85.71%), Postives = 92/98 (93.88%), Query Frame = 1
Query:    1 VICDHLNLGVKTGLPYIFHSKASNPFVNLKKEYKGIFWQEDIIPFFQAVTLPKECTTVQECYIELSKQVKEKLSKVDPYFDKLADAMVTWIEAWDELN 294
            VICDHL LG+KTGLPYI+HSKASNPFVNLKKEY GIFWQE+IIPFFQA TLPKECTTVQ+CY+ELSKQVK+KLS +DPYF KL +AMVTWIEAWDELN
Sbjct:  245 VICDHLGLGIKTGLPYIWHSKASNPFVNLKKEYNGIFWQEEIIPFFQAATLPKECTTVQQCYLELSKQVKKKLSSIDPYFTKLGEAMVTWIEAWDELN 342          
BLAST of CX301749 vs. ExPASy Swiss-Prot
Match: UPTG_MAIZE (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Zea mays GN=UPTG PE=1 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 2.389e-46
Identity = 85/99 (85.86%), Postives = 91/99 (91.92%), Query Frame = 1
Query:    1 VICDHLNLGVKTGLPYIFHSKASNPFVNLKKEYKGIFWQEDIIPFFQAVTLPKECTTVQECYIELSKQVKEKLSKVDPYFDKLADAMVTWIEAWDELNP 297
            VICDHL+LGVKTGLPYI+HSKASNPFVNLKKEYKGIFWQEDIIPFFQ VT+PK+C TVQ+CYI LS QVKEKL  +DPYF KL DAMVTWIEAWDELNP
Sbjct:  255 VICDHLSLGVKTGLPYIWHSKASNPFVNLKKEYKGIFWQEDIIPFFQNVTIPKDCDTVQKCYIYLSGQVKEKLGTIDPYFVKLGDAMVTWIEAWDELNP 353          
BLAST of CX301749 vs. ExPASy Swiss-Prot
Match: UPTG_PEA (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Pisum sativum GN=UPTG PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 6.951e-46
Identity = 83/98 (84.69%), Postives = 91/98 (92.86%), Query Frame = 1
Query:    1 VICDHLNLGVKTGLPYIFHSKASNPFVNLKKEYKGIFWQEDIIPFFQAVTLPKECTTVQECYIELSKQVKEKLSKVDPYFDKLADAMVTWIEAWDELN 294
            VICDHL  GVKTGLPYI+HSKASNPFVNLKKEYKGIFWQE+IIPFFQA TL K+CT+VQ+CYIELSKQVKEKL  +DPYF KLADAMVTW+EAWDE+N
Sbjct:  248 VICDHLGYGVKTGLPYIWHSKASNPFVNLKKEYKGIFWQEEIIPFFQAATLSKDCTSVQKCYIELSKQVKEKLGTIDPYFIKLADAMVTWVEAWDEIN 345          
The following BLAST results are available for this feature:
BLAST of CX301749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
UPTG2_SOLTU1.654e-4785.86Alpha-1,4-glucan-protein synthase [UDP-forming] 2 ... [more]
UPTG1_SOLTU3.686e-4785.71Alpha-1,4-glucan-protein synthase [UDP-forming] 1 ... [more]
UPTG_MAIZE2.389e-4685.86Alpha-1,4-glucan-protein synthase [UDP-forming] OS... [more]
UPTG_PEA6.951e-4684.69Alpha-1,4-glucan-protein synthase [UDP-forming] OS... [more]
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Properties
Property NameValue
Genbank descriptionC08013B09SK PhyRootSw1 Citrus sinensis cDNA clone C08013B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301749 ID=CX301749; Name=CX301749; organism=Citrus sinensis; type=EST; length=565bp
GTGATATGTGACCATTTGAATTTGGGAGTAAAGACTGGTCTGCCTTATAT
CTTCCACAGCAAAGCAAGCAACCCGTTTGTGAACCTAAAGAAAGAGTACA
AGGGCATCTTCTGGCAGGAAGATATCATCCCATTCTTCCAAGCCGTGACA
CTTCCAAAAGAGTGCACTACTGTGCAAGAGTGCTACATTGAACTGTCGAA
ACAGGTCAAGGAAAAGCTTAGCAAAGTAGATCCCTACTTCGACAAGTTGG
CAGATGCCATGGTGACCTGGATTGAAGCGTGGGATGAGCTTAACCCAGCT
GGAGCTGCAGTGGCCAATGGCAAAGCCTAAGTAGAGAAACTTTTGATTAA
CTGGGGACGACAATATTTTCCTTCATGTTAGGGAGTAATTTATAGTCATT
AGCTGCTGTATTTTTACAAAGTTTTATGCACTTTTTGGCACCCAATTTGG
TCCGACATTTGGATTTTACAGATTGGTCAGTGTAATTTTATTTATTTACT
TCGTGCTCTGAACTTATAGGAATAAAACATGTGGTTGATTTTGCTTTAAA
AAAAAAAAAAAAAAA
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