CX301740

Overview
NameCX301740
Unique NameCX301740
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length397
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6849 contig Csv1_Contig6849:355..751. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX301740 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 1.809e-49
Identity = 92/131 (70.23%), Postives = 108/131 (82.44%), Query Frame = 3
Query:    3 RTNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASKENGVQTVTVP 395
            RTNVFDPFSLDVWDPF+GFL+  LTNAP  A++ + F NA++DW+ETP+AHVFKAD+PGL+          G ILQISGERS E EEK+D WHRVERSSGKF+RRFRLP+NAKVE+VKAS ENGV +VTVP
Sbjct:   12 RTNVFDPFSLDVWDPFEGFLTPGLTNAP--AKDVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVP 140          
BLAST of CX301740 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 9.925e-48
Identity = 92/133 (69.17%), Postives = 108/133 (81.20%), Query Frame = 3
Query:    3 RTNVFDPFSLDVWDPFDGFL--SSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASKENGVQTVTVP 395
            R+NVFDPFS D+WDPF+GF   SSAL NA S+AR+ + F NAR+DWKETP+AHVFKADLPGL+            +LQISGERSKE EEKNDKWHRVER+SGKF+RRFRLP+NAK+E+VKA+ ENGV TV VP
Sbjct:   12 RSNVFDPFSQDLWDPFEGFFTPSSALANA-STARDVAAFTNARVDWKETPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTVVVP 143          
BLAST of CX301740 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 9.925e-48
Identity = 93/132 (70.45%), Postives = 107/132 (81.06%), Query Frame = 3
Query:    3 RTNVFDPFSLDVWDPFDGFLS-SALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASKENGVQTVTVP 395
            RTNVFDPFSLDV+DPF+GFL+ S L NAP  A + + F NA++DW+ETP+AHVFKADLPGLR          G ILQISGERS E EEKNDKWHRVERSSGKF RRFRLP+NAK+E++KAS ENGV +VTVP
Sbjct:   12 RTNVFDPFSLDVFDPFEGFLTPSGLANAP--AMDVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVP 141          
BLAST of CX301740 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 2.888e-47
Identity = 97/140 (69.29%), Postives = 108/140 (77.14%), Query Frame = 3
Query:    3 RTNVFDPFSLDVWDPFDGFL-----SSALTNAPSSAR----ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASKENGVQTVTVP 395
            R+NVFDPFSLD+WDPFDGF      SS+ +  PS  R    ET+ FA ARIDWKETP+AHVFKAD+PGL+          G ILQISGER+KEQEEK D+WHRVERSSGKFLRRFRLPDNAK EQ+KAS ENGV TVTVP
Sbjct:    6 RSNVFDPFSLDLWDPFDGFPFGSGGSSSGSIFPSFPRGASSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTVP 145          
BLAST of CX301740 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.097e-46
Identity = 92/140 (65.71%), Postives = 105/140 (75.00%), Query Frame = 3
Query:    3 RTNVFDPFSLDVWDPFDGFLSSALTNAPSS---------ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASKENGVQTVTVP 395
            R+NVFDPFSLD+WDPFDGF   + + +  S         + ET+ FA ARIDWKETP+AHVFKAD+PGL+          G +LQISGERSKEQEEK DKWHRVERSSGKFLRRFRLP+N K EQ+KAS ENGV TVTVP
Sbjct:    6 RSNVFDPFSLDLWDPFDGFPFGSGSRSSGSIFPSFPRGTSSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVP 145          
BLAST of CX301740 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 2.445e-46
Identity = 89/131 (67.94%), Postives = 103/131 (78.63%), Query Frame = 3
Query:    3 RTNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASKENGVQTVTVP 395
            R+NVFDPFSLDVWDPF  F     ++A    +ET+ F N  IDWKETPQAHVFKADLPGL+          G++LQISGER+KE+EEKNDKWHRVERSSGKFLRRFRLP+NAKV++VKA+  NGV TVTVP
Sbjct:   12 RSNVFDPFSLDVWDPFKDF-PLVTSSASEFGKETAAFVNTHIDWKETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTVP 141          
BLAST of CX301740 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 5.446e-46
Identity = 89/133 (66.92%), Postives = 103/133 (77.44%), Query Frame = 3
Query:    3 RTNVFDPFSLDVWDPFDGFLSSALTNA--PSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASKENGVQTVTVP 395
            R+NVFDPFSLD+WDPFDGF   + + +  P +  + + FA ARIDWKETP+AHVFKAD+PGL+          G +LQISGER KEQEEK DKWHRVERSSGKFLRRFRLP+N K EQ+KAS ENGV TVTVP
Sbjct:    6 RSNVFDPFSLDLWDPFDGFPFGSGSGSLFPRANSDAAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVP 138          
BLAST of CX301740 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 2.070e-45
Identity = 86/131 (65.65%), Postives = 104/131 (79.39%), Query Frame = 3
Query:    3 RTNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASKENGVQTVTVP 395
            R+NVFDPFSLD+WDPFD    S +    +S  +T+ FANARIDWKETP++HVFKADLPG++          G +L ISG+RSKE+E+KNDKWHRVERSSG+F+RRFRLP+NAKV+QVKA  ENGV TVTVP
Sbjct:    6 RSNVFDPFSLDLWDPFDSVFRSVVP--ATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVTVP 134          
BLAST of CX301740 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 2.703e-45
Identity = 86/131 (65.65%), Postives = 104/131 (79.39%), Query Frame = 3
Query:    3 RTNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASKENGVQTVTVP 395
            R+NVFDPFSLD+WDPFD    S +    +S  +T+ FANARIDWKETP++HVFKADLPG++          G +L ISG+RSKE+E+KNDKWHRVERSSG+F+RRFRLP+NAKV+QVKA  ENGV TVTVP
Sbjct:    6 RSNVFDPFSLDLWDPFDSVFRSVVP--ATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVP 134          
BLAST of CX301740 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 4.610e-45
Identity = 90/136 (66.18%), Postives = 104/136 (76.47%), Query Frame = 3
Query:    3 RTNVFDPFSLDVWDPFDGF-----LSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASKENGVQTVTVP 395
            R NVFDPFSLDVWDPF  F     LSSA  + P  +RE S F + R+DWKETP+AHVFKAD+PGL+           ++LQISGER+ E+E+KND WHRVERSSGKF+RRFRLP+NAKVEQVKAS ENGV TVTVP
Sbjct:   12 RNNVFDPFSLDVWDPFKDFPFPNTLSSA--SFPEFSRENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTVP 145          
The following BLAST results are available for this feature:
BLAST of CX301740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP17_ARATH1.809e-4970.2317.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HS181_ARATH9.925e-4869.1718.1 kDa class I heat shock protein OS=Arabidopsis... [more]
HS17C_ARATH9.925e-4870.4517.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HS17A_ORYSJ2.888e-4769.2917.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HS181_ORYSJ1.097e-4665.7118.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP11_DAUCA2.445e-4667.9417.8 kDa class I heat shock protein OS=Daucus caro... [more]
HS174_ORYSJ5.446e-4666.9217.4 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16B_ORYSJ2.070e-4565.6516.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HS16A_ORYSJ2.703e-4565.6516.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]
HSP16_SOYBN4.610e-4566.1818.5 kDa class I heat shock protein OS=Glycine max... [more]

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Properties
Property NameValue
Genbank descriptionC08013A11SK PhyRootSw1 Citrus sinensis cDNA clone C08013A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301740 ID=CX301740; Name=CX301740; organism=Citrus sinensis; type=EST; length=397bp
GAAGAACCAACGTGTTCGATCCATTTTCATTAGATGTATGGGATCCTTTC
GACGGGTTCTTGTCCTCTGCCCTTACCAACGCGCCGTCTTCGGCTAGGGA
AACATCCCAATTCGCCAATGCAAGAATTGACTGGAAAGAGACTCCTCAGG
CTCATGTATTCAAGGCTGATCTTCCAGGGCTGAGGAAAGAAGAAGTGAAA
GTTGAGGTTGAAGAGGGCAGGATTCTGCAGATAAGCGGGGAGAGGAGCAA
GGAGCAGGAAGAGAAGAATGACAAGTGGCATCGCGTCGAGAGGAGCAGTG
GCAAGTTCCTGAGGAGGTTCAGGTTGCCCGACAATGCTAAGGTGGAGCAG
GTTAAAGCCAGCAAGGAAAATGGTGTGCAAACAGTGACTGTTCCTAA
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