CX301737

Overview
NameCX301737
Unique NameCX301737
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301737 vs. ExPASy Swiss-Prot
Match: RL23_SCHPO (60S ribosomal protein L23 OS=Schizosaccharomyces pombe GN=rpl23a PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 3.180e-58
Identity = 105/137 (76.64%), Postives = 121/137 (88.32%), Query Frame = 3
Query:   24 RAGSAASGNKFRLTCGLPVAAVMNCADNTGAKNLYIIAVKGWGSRLNRLPKAGPGDMVLATVKKGKPELRKKVTFAVVIRQRKPWRRKDGVFIYFEDNAGVIVNPKGEMKGSQVAGPVAKECADLWPRISSNAGTIV 434
            R   AASG K+R+T GLPV A+MNCADN+GAKNLYI++V G G+RLNRLP A  GDMVLATVKKGKP+LRKK+  A+V+RQRK WRRKDGV++YFEDNAGVIVNPKGEMKGS + GPVAKECADLWPRI+SNAGT+V
Sbjct:    3 RGRGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPRIASNAGTVV 139          
BLAST of CX301737 vs. ExPASy Swiss-Prot
Match: RL23_ARATH (60S ribosomal protein L23 OS=Arabidopsis thaliana GN=RPL23A PE=2 SV=3)

HSP 1 Score: 221.09 bits (562), Expect = 2.061e-57
Identity = 106/140 (75.71%), Postives = 119/140 (85.00%), Query Frame = 3
Query:   15 VSKRAGSAASGNKFRLTCGLPVAAVMNCADNTGAKNLYIIAVKGWGSRLNRLPKAGPGDMVLATVKKGKPELRKKVTFAVVIRQRKPWRRKDGVFIYFEDNAGVIVNPKGEMKGSQVAGPVAKECADLWPRISSNAGTIV 434
            +SKR     SGNKFR++ GLPVAA +NCADNTGAKNLYII+VKG   RLNRLP A  GDMV+ATVKKGKP+LRKKV  AV++RQRKPWRRKDGVF+YFEDNAGVIVNPKGEMKGS + GP+ KECADLWPRI+S A  IV
Sbjct:    1 MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 140          
BLAST of CX301737 vs. ExPASy Swiss-Prot
Match: RL23_DANRE (60S ribosomal protein L23 OS=Danio rerio GN=rpl23 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 4.591e-57
Identity = 109/139 (78.42%), Postives = 121/139 (87.05%), Query Frame = 3
Query:   15 VSKRAGSAASGNKFRLTCGLPVAAVMNCADNTGAKNLYIIAVKGWGSRLNRLPKAGPGDMVLATVKKGKPELRKKVTFAVVIRQRKPWRRKDGVFIYFEDNAGVIVNPKGEMKGSQVAGPVAKECADLWPRISSNAGTI 431
            +SKR    +SG KFR++ GLPV AV+NCADNTGAKNLYII+VKG   RLNRLP AG GDMV+ATVKKGKPELRKKV  AVVIRQRK +RRKDGVF+YFEDNAGVIVN KGEMKGS + GPVAKECADLWPRI+SNAG+I
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPSAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of CX301737 vs. ExPASy Swiss-Prot
Match: RL23_RAT (60S ribosomal protein L23 OS=Rattus norvegicus GN=Rpl23 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 5.996e-57
Identity = 109/139 (78.42%), Postives = 121/139 (87.05%), Query Frame = 3
Query:   15 VSKRAGSAASGNKFRLTCGLPVAAVMNCADNTGAKNLYIIAVKGWGSRLNRLPKAGPGDMVLATVKKGKPELRKKVTFAVVIRQRKPWRRKDGVFIYFEDNAGVIVNPKGEMKGSQVAGPVAKECADLWPRISSNAGTI 431
            +SKR    +SG KFR++ GLPV AV+NCADNTGAKNLYII+VKG   RLNRLP AG GDMV+ATVKKGKPELRKKV  AVVIRQRK +RRKDGVF+YFEDNAGVIVN KGEMKGS + GPVAKECADLWPRI+SNAG+I
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of CX301737 vs. ExPASy Swiss-Prot
Match: RL23_PIG (60S ribosomal protein L23 OS=Sus scrofa GN=RPL23 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 5.996e-57
Identity = 109/139 (78.42%), Postives = 121/139 (87.05%), Query Frame = 3
Query:   15 VSKRAGSAASGNKFRLTCGLPVAAVMNCADNTGAKNLYIIAVKGWGSRLNRLPKAGPGDMVLATVKKGKPELRKKVTFAVVIRQRKPWRRKDGVFIYFEDNAGVIVNPKGEMKGSQVAGPVAKECADLWPRISSNAGTI 431
            +SKR    +SG KFR++ GLPV AV+NCADNTGAKNLYII+VKG   RLNRLP AG GDMV+ATVKKGKPELRKKV  AVVIRQRK +RRKDGVF+YFEDNAGVIVN KGEMKGS + GPVAKECADLWPRI+SNAG+I
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of CX301737 vs. ExPASy Swiss-Prot
Match: RL23_MOUSE (60S ribosomal protein L23 OS=Mus musculus GN=Rpl23 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 5.996e-57
Identity = 109/139 (78.42%), Postives = 121/139 (87.05%), Query Frame = 3
Query:   15 VSKRAGSAASGNKFRLTCGLPVAAVMNCADNTGAKNLYIIAVKGWGSRLNRLPKAGPGDMVLATVKKGKPELRKKVTFAVVIRQRKPWRRKDGVFIYFEDNAGVIVNPKGEMKGSQVAGPVAKECADLWPRISSNAGTI 431
            +SKR    +SG KFR++ GLPV AV+NCADNTGAKNLYII+VKG   RLNRLP AG GDMV+ATVKKGKPELRKKV  AVVIRQRK +RRKDGVF+YFEDNAGVIVN KGEMKGS + GPVAKECADLWPRI+SNAG+I
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of CX301737 vs. ExPASy Swiss-Prot
Match: RL23_ICTPU (60S ribosomal protein L23 OS=Ictalurus punctatus GN=rpl23 PE=2 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 5.996e-57
Identity = 109/139 (78.42%), Postives = 121/139 (87.05%), Query Frame = 3
Query:   15 VSKRAGSAASGNKFRLTCGLPVAAVMNCADNTGAKNLYIIAVKGWGSRLNRLPKAGPGDMVLATVKKGKPELRKKVTFAVVIRQRKPWRRKDGVFIYFEDNAGVIVNPKGEMKGSQVAGPVAKECADLWPRISSNAGTI 431
            +SKR    +SG KFR++ GLPV AV+NCADNTGAKNLYII+VKG   RLNRLP AG GDMV+ATVKKGKPELRKKV  AVVIRQRK +RRKDGVF+YFEDNAGVIVN KGEMKGS + GPVAKECADLWPRI+SNAG+I
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of CX301737 vs. ExPASy Swiss-Prot
Match: RL23_HUMAN (60S ribosomal protein L23 OS=Homo sapiens GN=RPL23 PE=1 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 5.996e-57
Identity = 109/139 (78.42%), Postives = 121/139 (87.05%), Query Frame = 3
Query:   15 VSKRAGSAASGNKFRLTCGLPVAAVMNCADNTGAKNLYIIAVKGWGSRLNRLPKAGPGDMVLATVKKGKPELRKKVTFAVVIRQRKPWRRKDGVFIYFEDNAGVIVNPKGEMKGSQVAGPVAKECADLWPRISSNAGTI 431
            +SKR    +SG KFR++ GLPV AV+NCADNTGAKNLYII+VKG   RLNRLP AG GDMV+ATVKKGKPELRKKV  AVVIRQRK +RRKDGVF+YFEDNAGVIVN KGEMKGS + GPVAKECADLWPRI+SNAG+I
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of CX301737 vs. ExPASy Swiss-Prot
Match: RL23_BOVIN (60S ribosomal protein L23 OS=Bos taurus GN=RPL23 PE=2 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 5.996e-57
Identity = 109/139 (78.42%), Postives = 121/139 (87.05%), Query Frame = 3
Query:   15 VSKRAGSAASGNKFRLTCGLPVAAVMNCADNTGAKNLYIIAVKGWGSRLNRLPKAGPGDMVLATVKKGKPELRKKVTFAVVIRQRKPWRRKDGVFIYFEDNAGVIVNPKGEMKGSQVAGPVAKECADLWPRISSNAGTI 431
            +SKR    +SG KFR++ GLPV AV+NCADNTGAKNLYII+VKG   RLNRLP AG GDMV+ATVKKGKPELRKKV  AVVIRQRK +RRKDGVF+YFEDNAGVIVN KGEMKGS + GPVAKECADLWPRI+SNAG+I
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of CX301737 vs. ExPASy Swiss-Prot
Match: RL23_YEAST (60S ribosomal protein L23 OS=Saccharomyces cerevisiae GN=RPL23A PE=1 SV=3)

HSP 1 Score: 218.779 bits (556), Expect = 1.023e-56
Identity = 101/136 (74.26%), Postives = 118/136 (86.76%), Query Frame = 3
Query:   27 AGSAASGNKFRLTCGLPVAAVMNCADNTGAKNLYIIAVKGWGSRLNRLPKAGPGDMVLATVKKGKPELRKKVTFAVVIRQRKPWRRKDGVFIYFEDNAGVIVNPKGEMKGSQVAGPVAKECADLWPRISSNAGTIV 434
            +G+ A G KFR++ GLPV A+MNCADN+GA+NLYIIAVKG GSRLNRLP A  GDMV+ATVKKGKPELRKKV  A+V+RQ K WRR+DGVF+YFEDNAGVI NPKGEMKGS + GPV KECADLWPR++SN+G +V
Sbjct:    2 SGNGAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKECADLWPRVASNSGVVV 137          
The following BLAST results are available for this feature:
BLAST of CX301737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 461
Match NameE-valueIdentityDescription
RL23_SCHPO3.180e-5876.6460S ribosomal protein L23 OS=Schizosaccharomyces p... [more]
RL23_ARATH2.061e-5775.7160S ribosomal protein L23 OS=Arabidopsis thaliana ... [more]
RL23_DANRE4.591e-5778.4260S ribosomal protein L23 OS=Danio rerio GN=rpl23 ... [more]
RL23_RAT5.996e-5778.4260S ribosomal protein L23 OS=Rattus norvegicus GN=... [more]
RL23_PIG5.996e-5778.4260S ribosomal protein L23 OS=Sus scrofa GN=RPL23 P... [more]
RL23_MOUSE5.996e-5778.4260S ribosomal protein L23 OS=Mus musculus GN=Rpl23... [more]
RL23_ICTPU5.996e-5778.4260S ribosomal protein L23 OS=Ictalurus punctatus G... [more]
RL23_HUMAN5.996e-5778.4260S ribosomal protein L23 OS=Homo sapiens GN=RPL23... [more]
RL23_BOVIN5.996e-5778.4260S ribosomal protein L23 OS=Bos taurus GN=RPL23 P... [more]
RL23_YEAST1.023e-5674.2660S ribosomal protein L23 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionC08013A08SK PhyRootSw1 Citrus sinensis cDNA clone C08013A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301737 ID=CX301737; Name=CX301737; organism=Citrus sinensis; type=EST; length=486bp
GAATTCGGCACGAGGTGAGTAAGAGAGCTGGAAGTGCCGCTAGCGGTAAC
AAATTTAGATTGACTTGTGGTCTTCCCGTTGCCGCAGTCATGAATTGTGC
CGATAACACTGGAGCAAAAAATTTATATATTATTGCCGTTAAAGGGTGGG
GATCTCGACTCAATCGTTTACCAAAGGCTGGACCTGGTGATATGGTCCTC
GCAACCGTAAAGAAGGGTAAACCCGAATTACGTAAAAAAGTCACCTTTGC
TGTTGTTATCCGACAAAGAAAGCCTTGGAGACGAAAGGATGGTGTTTTCA
TTTACTTCGAAGATAATGCTGGAGTTATTGTAAATCCTAAAGGAGAAATG
AAAGGATCACAAGTTGCTGGTCCCGTAGCTAAAGAGTGTGCCGATTTATG
GCCAAGAATTTCCAGTAACGCTGGTACTATTGTCTAATAACCGAATAAAA
AGCATAGCAATTTTTCCTCAAAAAAAAAAAAAAAAA
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