CX301640

Overview
NameCX301640
Unique NameCX301640
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX301640_ssr496 microsatellite CX301640_ssr496:496..510. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX301640 vs. ExPASy Swiss-Prot
Match: PET8_YEAST (Putative mitochondrial carrier protein PET8 OS=Saccharomyces cerevisiae GN=PET8 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.584e-25
Identity = 67/150 (44.67%), Postives = 86/150 (57.33%), Query Frame = 3
Query:    3 KGFYTGYFSTILRELPFSFIQFPLYEWMKKVIERSILNNERKVRSYEAAVCGSISGGIAAALTTPLDVIKTRLMLGKDKHGVAYNGMIDTIRRISLEANDVXXXXXXXXXXXXLQRQVRVFFAGLGPRVMWISIGGFIFFGAYEQSARLL 452
            K  Y G+ +TI+RE+PF+ IQFPLYE++KK   ++  N + +V  ++ A+CGSI+GGIAAA TTPLD +KTRLML K    +        I RI  E                      VFF+G+GPR MWIS GG IF G YE    LL
Sbjct:  148 KNLYRGWSTTIMREIPFTCIQFPLYEYLKKTWAKA--NGQSQVEPWKGAICGSIAGGIAAATTTPLDFLKTRLMLNKTTASLG-----SVIIRIYREEGPA------------------VFFSGVGPRTMWISAGGAIFLGMYETVHSLL 272          
BLAST of CX301640 vs. ExPASy Swiss-Prot
Match: PET8_ASHGO (Putative mitochondrial carrier protein PET8 OS=Ashbya gossypii GN=PET8 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.026e-24
Identity = 63/144 (43.75%), Postives = 88/144 (61.11%), Query Frame = 3
Query:    3 KGFYTGYFSTILRELPFSFIQFPLYEWMKKVIERSILNNERKVRSYEAAVCGSISGGIAAALTTPLDVIKTRLMLGKDKHGVAYNGMIDTIRRISLEANDVXXXXXXXXXXXXLQRQVRVFFAGLGPRVMWISIGGFIFFGAYE 434
            +G Y G+++TI+RE+PF+ IQFPLYE++KK  + +      +V +++ AVCGS++GGIAAA TTPLDV+KTR+ML + +  V    +  T+ R                     +   RVFF G+GPR MWIS GG IF G YE
Sbjct:  147 RGLYRGWWTTIMREIPFTCIQFPLYEYLKK--KWAAYAEIERVSAWQGAVCGSLAGGIAAAATTPLDVLKTRMMLHERR--VPMLHLARTLFR---------------------EEGARVFFRGIGPRTMWISAGGAIFLGVYE 265          
BLAST of CX301640 vs. ExPASy Swiss-Prot
Match: SAMC_XENTR (S-adenosylmethionine mitochondrial carrier protein OS=Xenopus tropicalis GN=slc25a26 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.094e-24
Identity = 64/150 (42.67%), Postives = 87/150 (58.00%), Query Frame = 3
Query:    3 KGFYTGYFSTILRELPFSFIQFPLYEWMKKVIERSILNNERKVRSYEAAVCGSISGGIAAALTTPLDVIKTRLMLGKDKHGVAYNGMIDTIRRISLEANDVXXXXXXXXXXXXLQRQVRVFFAGLGPRVMWISIGGFIFFGAYEQSARLL 452
            KG Y GY ST+LRE+PFS +QFPL+E +K +         R V S+++AVCG+ +GG AAALTTPLDV KTR+ML K   GVA   ++  +  I                     + +   FAG+ PR+  IS+GGFIF GAY++   L+
Sbjct:  137 KGLYRGYKSTVLREIPFSLVQFPLWESLKDLWS---WKQGRAVDSWQSAVCGAFAGGFAAALTTPLDVAKTRIMLAKAGSGVASGNVLFALHEI------------------WRTQGIMGLFAGVIPRMTAISLGGFIFLGAYDKVRTLM 265          
BLAST of CX301640 vs. ExPASy Swiss-Prot
Match: SAMC_XENLA (S-adenosylmethionine mitochondrial carrier protein OS=Xenopus laevis GN=slc25a26 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.135e-23
Identity = 61/145 (42.07%), Postives = 85/145 (58.62%), Query Frame = 3
Query:    3 KGFYTGYFSTILRELPFSFIQFPLYEWMKKVIERSILNNERKVRSYEAAVCGSISGGIAAALTTPLDVIKTRLMLGKDKHGVAYNGMIDTIRRISLEANDVXXXXXXXXXXXXLQRQVRVFFAGLGPRVMWISIGGFIFFGAYEQ 437
            KG Y GY ST+LRE+PFS +QFPL+E++K +         R V  +++AVCG+ +GG AAA+TTPLDV KTR+ML K   GVA   ++  +  I                     + +   FAG+ PR+  IS+GGFIF GAY++
Sbjct:  137 KGLYRGYKSTVLREIPFSLVQFPLWEFLKNLWS---WKQGRAVDCWQSAVCGAFAGGFAAAVTTPLDVAKTRIMLAKAGSGVANGNVLFALHEI------------------WRTQGIMGLFAGVIPRMTMISLGGFIFLGAYDK 260          
BLAST of CX301640 vs. ExPASy Swiss-Prot
Match: SAMC_DANRE (S-adenosylmethionine mitochondrial carrier protein OS=Danio rerio GN=slc25a26 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.312e-23
Identity = 63/150 (42.00%), Postives = 87/150 (58.00%), Query Frame = 3
Query:    3 KGFYTGYFSTILRELPFSFIQFPLYEWMKKVIERSILNNERKVRSYEAAVCGSISGGIAAALTTPLDVIKTRLMLGKDKHGVAYNGMIDTIRRISLEANDVXXXXXXXXXXXXLQRQVRVFFAGLGPRVMWISIGGFIFFGAYEQSARLL 452
            +G Y GY ST+LRE+PFS +QFPL+E++K V  R       ++ S++AAVCG+++GG+AA +TTPLDV KT +ML K     A   +   +  +                     R +   FAG  PRVM+IS+GGFIF GAYE+  R L
Sbjct:  138 RGLYRGYGSTVLREIPFSLVQFPLWEYLKAVWWR---RQGGRLDSWQAAVCGALAGGVAAFVTTPLDVAKTWIMLAKAGTSTASGNIPMVLCEV------------------WRSRGIPGLFAGSIPRVMFISMGGFIFLGAYEKVRRTL 266          
BLAST of CX301640 vs. ExPASy Swiss-Prot
Match: SAMC_BOVIN (S-adenosylmethionine mitochondrial carrier protein OS=Bos taurus GN=SLC25A26 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.312e-23
Identity = 61/153 (39.87%), Postives = 86/153 (56.21%), Query Frame = 3
Query:    3 KGFYTGYFSTILRELPFSFIQFPLYEWMKKVIERSILNNERKVRSYEAAVCGSISGGIAAALTTPLDVIKTRLMLGKDKHGVAYNGMIDTIRRISLEANDVXXXXXXXXXXXXLQRQVRVFFAGLGPRVMWISIGGFIFFGAYEQSARLLQHL 461
            +G Y GY ST+LRE+PFS +QFPL+E +K +        +R V S++AAVCG+ +GG AAA+TTPLDV KTR+ML K     A   ++  +  +                     + +   FAG+ PR+  IS+GGFIF G Y+Q+   L  L
Sbjct:  138 QGLYRGYKSTVLREIPFSLVQFPLWESLKALWS---WRQDRVVDSWQAAVCGAFAGGFAAAVTTPLDVAKTRIMLAKAGSSTASGNILSALHAV------------------WRTQGLSGLFAGVFPRMAAISLGGFIFLGVYDQTRSFLLEL 269          
BLAST of CX301640 vs. ExPASy Swiss-Prot
Match: SAMC_MOUSE (S-adenosylmethionine mitochondrial carrier protein OS=Mus musculus GN=Slc25a26 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 4.768e-22
Identity = 60/150 (40.00%), Postives = 85/150 (56.67%), Query Frame = 3
Query:    3 KGFYTGYFSTILRELPFSFIQFPLYEWMKKVIERSILNNERKVRSYEAAVCGSISGGIAAALTTPLDVIKTRLMLGKDKHGVAYNGMIDTIRRISLEANDVXXXXXXXXXXXXLQRQVRVFFAGLGPRVMWISIGGFIFFGAYEQSARLL 452
            +G Y GY ST+LRE+PFS +QFPL+E +K +           V S+++AVCG+ +GG AAA+TTPLDV KTR+ML K     A   ++  +  +                     + +   FAG+ PR+  IS+GGFIF GAY+Q+  LL
Sbjct:  138 QGLYRGYKSTVLREIPFSLVQFPLWESLKALWA---WRRGHVVDSWQSAVCGAFAGGFAAAVTTPLDVAKTRIMLAKAGSSTAVGNVLSAMHGV------------------WRSQGLAGLFAGVLPRMAAISMGGFIFLGAYDQARSLL 266          
BLAST of CX301640 vs. ExPASy Swiss-Prot
Match: SAMC_HUMAN (S-adenosylmethionine mitochondrial carrier protein OS=Homo sapiens GN=SLC25A26 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.812e-21
Identity = 58/150 (38.67%), Postives = 85/150 (56.67%), Query Frame = 3
Query:    3 KGFYTGYFSTILRELPFSFIQFPLYEWMKKVIERSILNNERKVRSYEAAVCGSISGGIAAALTTPLDVIKTRLMLGKDKHGVAYNGMIDTIRRISLEANDVXXXXXXXXXXXXLQRQVRVFFAGLGPRVMWISIGGFIFFGAYEQSARLL 452
            +G Y GY ST+LRE+PFS +QFPL+E +K +        +  V S+++AVCG+ +GG AAA+TTPLDV KTR+ L K     A   ++  +  +                     + +   FAG+ PR+  IS+GGFIF GAY+++  LL
Sbjct:  138 QGLYRGYKSTVLREIPFSLVQFPLWESLKALWS---WRQDHVVDSWQSAVCGAFAGGFAAAVTTPLDVAKTRITLAKAGSSTADGNVLSVLHGV------------------WRSQGLAGLFAGVFPRMAAISLGGFIFLGAYDRTHSLL 266          
BLAST of CX301640 vs. ExPASy Swiss-Prot
Match: SAMC_DROME (S-adenosylmethionine mitochondrial carrier protein homolog OS=Drosophila melanogaster GN=CG4743 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.534e-20
Identity = 57/150 (38.00%), Postives = 84/150 (56.00%), Query Frame = 3
Query:    3 KGFYTGYFSTILRELPFSFIQFPLYEWMKKVIERSILNNERKVRSYEAAVCGSISGGIAAALTTPLDVIKTRLMLGKDKHGVAYNGMIDTIRRISLEANDVXXXXXXXXXXXXLQRQVRVFFAGLGPRVMWISIGGFIFFGAYEQSARLL 452
            +G Y G+ STI+RE+PFS IQFPL+E+ K  ++ + L        +  A+CG+++GGI+A LTTPLDV+KTR+ML +                   E+ +             L+R     FAG  PRV+WI++GG  FFG Y+ + R+L
Sbjct:  148 RGLYRGFGSTIMREIPFSLIQFPLWEYFK--LQWTPLTGFDST-PFSVALCGAVAGGISAGLTTPLDVVKTRIMLAE------------------RESLNRRRSARRILHGIYLERGFSGLFAGFVPRVLWITLGGAFFFGFYDLTTRIL 276          
BLAST of CX301640 vs. ExPASy Swiss-Prot
Match: YDE9_SCHPO (Uncharacterized mitochondrial carrier C12B10.09 OS=Schizosaccharomyces pombe GN=SPAC12B10.09 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.215e-19
Identity = 55/144 (38.19%), Postives = 81/144 (56.25%), Query Frame = 3
Query:    3 KGFYTGYFSTILRELPFSFIQFPLYEWMKKVIERSILNNERKVRSYEAAVCGSISGGIAAALTTPLDVIKTRLMLGKDKHGVAYNGMIDTIRRISLEANDVXXXXXXXXXXXXLQRQVRVFFAGLGPRVMWISIGGFIFFGAYE 434
            + FY GY  TI RE+PF+ IQFP++E +K  ++  I ++  K  ++EAA+ GSI+GGIAAALTTP DV+KTR+M  + +    +     TI+ I      +                    + G+ PRV+W+S GG IF G Y+
Sbjct:  216 RDFYAGYGITIAREIPFTLIQFPIWEHLK--LKWRIKHSRNKNLAHEAAISGSIAGGIAAALTTPFDVVKTRIMTSQQRLSYVF-----TIKSIVAHEGFL------------------ALYKGIVPRVLWLSGGGAIFLGCYD 334          
The following BLAST results are available for this feature:
BLAST of CX301640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PET8_YEAST1.584e-2544.67Putative mitochondrial carrier protein PET8 OS=Sac... [more]
PET8_ASHGO1.026e-2443.75Putative mitochondrial carrier protein PET8 OS=Ash... [more]
SAMC_XENTR5.094e-2442.67S-adenosylmethionine mitochondrial carrier protein... [more]
SAMC_XENLA1.135e-2342.07S-adenosylmethionine mitochondrial carrier protein... [more]
SAMC_DANRE4.312e-2342.00S-adenosylmethionine mitochondrial carrier protein... [more]
SAMC_BOVIN4.312e-2339.87S-adenosylmethionine mitochondrial carrier protein... [more]
SAMC_MOUSE4.768e-2240.00S-adenosylmethionine mitochondrial carrier protein... [more]
SAMC_HUMAN1.812e-2138.67S-adenosylmethionine mitochondrial carrier protein... [more]
SAMC_DROME1.534e-2038.00S-adenosylmethionine mitochondrial carrier protein... [more]
YDE9_SCHPO2.215e-1938.19Uncharacterized mitochondrial carrier C12B10.09 OS... [more]

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Properties
Property NameValue
Genbank descriptionC08011H12SK PhyRootSw1 Citrus sinensis cDNA clone C08011H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301640 ID=CX301640; Name=CX301640; organism=Citrus sinensis; type=EST; length=610bp
GGAAGGGTTTCTATACAGGATATTTCTCGACCATTCTGAGAGAGTTGCCC
TTCTCTTTCATCCAGTTCCCTCTCTATGAGTGGATGAAGAAAGTGATAGA
AAGATCAATCTTAAATAATGAAAGGAAGGTGCGGTCCTATGAGGCAGCGG
TCTGTGGCTCGATCTCTGGAGGCATTGCTGCTGCTCTGACGACGCCATTA
GATGTCATCAAGACAAGATTAATGTTAGGCAAGGACAAGCATGGTGTGGC
ATATAATGGTATGATCGATACGATTCGAAGGATTTCTCTAGAAGCGAATG
ATGTCAGTACCTCCCCCTCTTCCCCCACTACCTCTACACCTCTGCAGCGT
CAAGTTCGTGTCTTCTTCGCAGGGCTCGGACCTCGTGTCATGTGGATTAG
TATTGGAGGATTCATATTCTTCGGTGCCTATGAACAATCAGCGCGCCTTC
TACAACACCTCCTCTGAGGATGTGATGTGAGGTGTATTAATAGGCAGTGT
AGTGTAGTGTAGTGATAGGATTAGAAGGGATCTCAATGAATATCAATGAA
TATGTATGATGTCTTAGTTATTTTAATTAATGAACTCGCTAACAAAAAAA
AAAAAAAAAA
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