CX301637

Overview
NameCX301637
Unique NameCX301637
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4979 contig Csv1_Contig4979:1..635. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX301637 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.093e-19
Identity = 43/90 (47.78%), Postives = 60/90 (66.67%), Query Frame = 2
Query:  137 ITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCSKV 406
            +TC QV+  L PCI+Y   GGAV PACC+GIR +N  +KTT DR+T CNC+K+ +A +PG+N +    LP  C    PYK++   +C+ V
Sbjct:   27 LTCGQVSSNLAPCIAYVRGGGAVPPACCNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATV 116          
BLAST of CX301637 vs. ExPASy Swiss-Prot
Match: NLTP_GERHY (Non-specific lipid-transfer protein OS=Gerbera hybrida PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.118e-19
Identity = 43/91 (47.25%), Postives = 57/91 (62.64%), Query Frame = 2
Query:  137 ITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCSKVN 409
            I+C QVT  L PC  Y   GG V PACC+G+R LN A+KTT DR+T C C+K   A    +N +  N+LP  C     YK+T ++DCSK++
Sbjct:   26 ISCGQVTSGLVPCFGYLAAGGPVPPACCNGVRGLNNAAKTTPDRQTACGCLKGILAANTRINLNNANSLPGKCGISIGYKITPNIDCSKIH 116          
BLAST of CX301637 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 44/90 (48.89%), Postives = 56/90 (62.22%), Query Frame = 2
Query:  137 ITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCSKV 406
            ITC QVT  L PCI Y   GGAV PACC+GIR +N  ++TT DR+T CNC+K  A  I G+N +    LP  C    PYK++   +C+ V
Sbjct:   25 ITCGQVTSSLAPCIGYVRSGGAVPPACCNGIRTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATV 114          
BLAST of CX301637 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 42/90 (46.67%), Postives = 56/90 (62.22%), Query Frame = 2
Query:  137 ITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCSKV 406
            ++C QV+  L PCISY   GGAV PACC G+++LN+A+KTT DR+  C C+K     I G+N     + P  C    PYK++   DCSKV
Sbjct:   26 LSCGQVSSSLAPCISYLTKGGAVPPACCSGVKSLNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKV 115          
BLAST of CX301637 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.031e-18
Identity = 43/90 (47.78%), Postives = 58/90 (64.44%), Query Frame = 2
Query:  137 ITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCSKV 406
            ITC QV+  L PCI+Y   GGAV PACC+GIR +N  ++TT DRR  CNC+K+ +  IPG+N +    LP  C    PYK++   +C+ V
Sbjct:    1 ITCGQVSSNLAPCINYVKGGGAVPPACCNGIRNVNNLARTTADRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTNCATV 90          
BLAST of CX301637 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.465e-18
Identity = 41/90 (45.56%), Postives = 56/90 (62.22%), Query Frame = 2
Query:  137 ITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCSKV 406
            ITC QV+  L PCI+Y   GGAV PACC+GI+ +N  +KTT DR+  CNC+K  A  + G+N     +LP  C    PYK++   +C+ V
Sbjct:   25 ITCSQVSANLAPCINYVRSGGAVPPACCNGIKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATV 114          
BLAST of CX301637 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.525e-18
Identity = 41/91 (45.05%), Postives = 55/91 (60.44%), Query Frame = 2
Query:  137 ITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCSKVN 409
            I+C QV   ++PC+SY   G     ACC G+R+LN+A+ TT DRRT CNC+K  A  I GLN     ++P  C    PY ++  +DCS VN
Sbjct:   28 ISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSVN 118          
BLAST of CX301637 vs. ExPASy Swiss-Prot
Match: NLT2A_ORYSJ (Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica GN=LTP2-A PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.525e-18
Identity = 41/91 (45.05%), Postives = 55/91 (60.44%), Query Frame = 2
Query:  137 ITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCSKVN 409
            I+C QV   ++PC+SY   G     ACC G+R+LN+A+ TT DRRT CNC+K  A  I GLN     ++P  C    PY ++  +DCS VN
Sbjct:   28 ISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSVN 118          
BLAST of CX301637 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.910e-18
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 2
Query:  137 ITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCSKV 406
            ITC QV+  L PCI Y   GGAV PACC+GIR +N  ++TT DR+  CNC+K+ +A +PG+N +    LP  C    PYK++   +C+ V
Sbjct:    1 ITCGQVSSALAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCATV 90          
BLAST of CX301637 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 5.910e-18
Identity = 43/90 (47.78%), Postives = 57/90 (63.33%), Query Frame = 2
Query:  137 ITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCSKV 406
            ITC QV+  L PCI Y   GGAV PACC+GIR +N  ++TT DRRT CNC+K+ +  I G+N +    LP  C    PYK++   +C+ V
Sbjct:    1 ITCGQVSSSLAPCIGYVRGGGAVPPACCNGIRNVNNLARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCATV 90          
The following BLAST results are available for this feature:
BLAST of CX301637 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
NLTP_PRUAV4.093e-1947.78Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP_GERHY9.118e-1947.25Non-specific lipid-transfer protein OS=Gerbera hyb... [more]
NLTP_MALDO1.191e-1848.89Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP_HELAN1.191e-1846.67Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP1_PRUDO2.031e-1847.78Non-specific lipid-transfer protein 1 OS=Prunus do... [more]
NLTP_PYRCO3.465e-1845.56Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP2_ORYSI4.525e-1845.05Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLT2A_ORYSJ4.525e-1845.05Non-specific lipid-transfer protein 2A OS=Oryza sa... [more]
NLTP1_PRUPE5.910e-1846.67Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP1_PRUAR5.910e-1847.78Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC08011H09SK PhyRootSw1 Citrus sinensis cDNA clone C08011H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301637 ID=CX301637; Name=CX301637; organism=Citrus sinensis; type=EST; length=635bp
GGAATTCGGCACGAGGCCTCGTGCCGAATTCGGCACGAGGATTACAATGG
CTGCTCAATTTCGAAAGGTGCCATTAACAGTGTCTATTGCAACAATGTTG
TTGTTATTGTTGGCTCCCCTGAATGCAGCAACAACAATAACATGTGAGCA
AGTGACAATCTGGCTGACACCATGCATCAGCTATGGCGTATTGGGTGGGG
CTGTTCAACCAGCTTGTTGTGATGGCATTAGAGCTTTGAATGCTGCTTCA
AAAACCACAGAAGATAGAAGGACCCAATGTAATTGTGTGAAGGAAGGTGC
TGCTAGGATCCCTGGTCTCAACTATGATCGTGTTAATACGCTTCCTGATA
TTTGTCGGAGTAAATGTCCTTATAAACTTACACATGATCTTGATTGCTCT
AAGGTGAACTAAATCTGCAGTTTGCACGGGCGGGGGTATCTGGTTTATTG
ATAAGTCACGAATGAAGTCTACAAAGAGAATAAGGCTGCTACTTTTGGCT
TATTGTCCTAAAAATATCTTCTATTACTCTAAAATAAAGCCTGAGATATT
TTATTGGCATTTTGCATTTTACATTATTATACAAGTCATTCTAATGATAT
GTGTTGCAATGTAAACATAAAAAAAAAAAAAAAAA
back to top