CX301616

Overview
NameCX301616
Unique NameCX301616
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301616 vs. ExPASy Swiss-Prot
Match: GL11_ORYSJ (Germin-like protein 1-1 OS=Oryza sativa subsp. japonica GN=GER4 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.196e-46
Identity = 99/193 (51.30%), Postives = 121/193 (62.69%), Query Frame = 3
Query:  111 PSHASDPDPLQDVCLADLNAPISINGFPCKPASEVTSDDFFTDFSKNP-TTFDVFKRAVTLGDVSGFPAVNTQGVSLFRIDLDVGGINPPHTHPRGTEAGIVTRGKVLVGLVTTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPISNEVLTKSFRVSDDVINAI 686
            PS A DPD LQDVC+ADL +P+ +NGFPCK  + VT+DDFF    KNP  T +     VT  +V  FP VNT GVS+ RID   GG NPPHTHPR TE   V  G + VG +TT N  F+K +T G VF+ PR L+HFQ N G GPA  I  FN+Q  G      TLF   PP+ ++VL K+FRV    ++AI
Sbjct:   21 PSLAGDPDMLQDVCVADLASPVKLNGFPCK--ANVTADDFFFAGLKNPGNTNNPAGSNVTAANVQSFPGVNTLGVSMARIDYAPGGQNPPHTHPRATEIIFVLEGVLEVGFITTANKLFTKTVTAGEVFVFPRGLVHFQQNRGHGPAAVIAAFNSQLQGTQAIAATLFAAAPPVPSDVLAKAFRVDVPQVDAI 211          
BLAST of CX301616 vs. ExPASy Swiss-Prot
Match: GLT2_ARATH (Germin-like protein subfamily T member 2 OS=Arabidopsis thaliana GN=At1g18980 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.039e-46
Identity = 98/193 (50.78%), Postives = 124/193 (64.25%), Query Frame = 3
Query:  111 PSHASDPDPLQDVCLADLNAPISINGFPCKPASEVTSDDFFTDFSKNP-TTFDVFKRAVTLGDVSGFPAVNTQGVSLFRIDLDVGGINPPHTHPRGTEAGIVTRGKVLVGLVTTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPISNEVLTKSFRVSDDVINAI 686
            PS +SD DPLQD C+ DL A  SINGFPCK  S V++ DFF      P  T      AV+  +V  FP +NT G+S+  ++   GG+NPPH+HPR TEAG+V  G V VG +TTNNT FSKVL  G +F++PR L+HFQ NVGK  A  I  FN+Q PG +   +TLF + P I N VLTK+FR  D  +N +
Sbjct:   24 PSLSSDSDPLQDFCVGDLKASPSINGFPCK--SSVSASDFFFSGLGGPLNTSTPNGVAVSPANVLTFPGLNTLGLSMNNVEFAPGGVNPPHSHPRATEAGVVIEGSVFVGFLTTNNTLFSKVLNAGEMFVVPRGLVHFQWNVGKVKARLITSFNSQLPGSAVLPSTLFGSNPTIPNAVLTKTFRTDDVTVNKL 214          
BLAST of CX301616 vs. ExPASy Swiss-Prot
Match: GL12_ORYSJ (Germin-like protein 1-2 OS=Oryza sativa subsp. japonica GN=Os01g0705100 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.561e-45
Identity = 89/189 (47.09%), Postives = 124/189 (65.61%), Query Frame = 3
Query:  123 SDPDPLQDVCLADLNAPISINGFPCKPASEVTSDDFFTD-FSKNPTTFDVFKRAVTLGDVSGFPAVNTQGVSLFRIDLDVGGINPPHTHPRGTEAGIVTRGKVLVGLVTTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPISNEVLTKSFRVSDDVINAI 686
            +D  PLQD+C+ADL A  +++GFPCKP + V SDDFF D   + P+T + F    T   VS FP +NT G+S+ R DL  GG+NPPH+HPR +E  +V  G+V+VG  T  N  FSKV+    +F++PR L HFQLNVG G A+F+ +F++Q+PG+      LF T P +  EVL K+F + +D + AI
Sbjct:   29 ADSPPLQDICVADLRAATAVDGFPCKPTASVVSDDFFCDAIVQAPSTSNPFGVNSTRATVSAFPGLNTLGLSITRTDLAPGGLNPPHSHPRASELVLVLSGEVMVGFTTAANRLFSKVVREKELFVVPRGLQHFQLNVGAGNASFVAMFDSQSPGLVTPTFALFATQPAMPMEVLAKTFLMGEDEVGAI 217          
BLAST of CX301616 vs. ExPASy Swiss-Prot
Match: GL33_ORYSJ (Germin-like protein 3-3 OS=Oryza sativa subsp. japonica GN=Os03g0693700 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.119e-44
Identity = 93/199 (46.73%), Postives = 125/199 (62.81%), Query Frame = 3
Query:  120 ASDPDPLQDVCLADLNAPISINGFPCKPASEVTSDDFFT-------DFSKNPTTFDVFKRAVTLGDVSGFPAVNTQGVSLFRIDLDVGGINPPHTHPRGTEAGIVTRGKVLVGLV---TTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPISNEVLTKSFRVSDDVINAI 686
            A+DPDPLQD C+ADL++ +++NG+PCKP      +  F+       D + NP   +V     T  DV+G+P VNT GVS+ RID   GG NPPH HPR TE GIV RG++LVG++    T N ++S+V+  G  F+IPR L+HFQ NVGK  AT +  FN+QNPG+     TLF + PPI   VL K+ RV   V+  +
Sbjct:   26 ANDPDPLQDFCVADLDSEVTLNGYPCKPTPAAGDEFLFSSRLATGGDVNANPNGSNV-----TQLDVAGWPGVNTLGVSMNRIDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGSLDTGNRYYSRVVRGGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDAGVVELL 219          
BLAST of CX301616 vs. ExPASy Swiss-Prot
Match: GLT1_ARATH (Germin-like protein subfamily T member 1 OS=Arabidopsis thaliana GN=GLP1 PE=2 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 1.237e-43
Identity = 94/190 (49.47%), Postives = 117/190 (61.58%), Query Frame = 3
Query:  111 PSHASDPDPLQDVCLADLNAPISINGFPCKPASEVTSDDFFTDFSKNPT-TFDVFKRAVTLGDVSGFPAVNTQGVSLFRIDLDVGGINPPHTHPRGTEAGIVTRGKVLVGLVTTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPISNEVLTKSFRVSDDVI 677
            PS +SD DPLQD C+ DL A  SINGFPCK A  V++ DFF      P  T +     V   +V  FP +NT G+S+  ++L  GG+NPPH HPR TE G V  G V VG ++TNNT FSKVL  G  F+IPR L+HFQ NVG+  A  I  FN+Q PG     +TLF + P I N VLT++FR  D  +
Sbjct:   24 PSLSSDSDPLQDFCVGDLKASASINGFPCKSA--VSASDFFYSGLGGPLDTSNPNGVTVAPANVLTFPGLNTLGISMNNVELAPGGVNPPHLHPRATEVGTVIEGSVFVGFLSTNNTLFSKVLNAGEAFVIPRGLVHFQWNVGQVKARMITAFNSQLPGAVVLPSTLFGSKPEIPNAVLTRAFRTDDTTV 211          
BLAST of CX301616 vs. ExPASy Swiss-Prot
Match: GL35_ORYSJ (Germin-like protein 3-5 OS=Oryza sativa subsp. japonica GN=Os03g0693900 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.237e-43
Identity = 96/201 (47.76%), Postives = 124/201 (61.69%), Query Frame = 3
Query:  105 PFPSHASDPDPLQDVCLADLNAPISINGFPCKPASEVTSDDFFTDFSKNPTTFDVFKRA----VTLGDVSGFPAVNTQGVSLFRIDLDVGGINPPHTHPRGTEAGIVTRGKVLVGLV---TTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPISNEVLTKSFRVSDDVINAI 686
            P    A+D DPLQD C+ADLN+ +++NG  CKPAS    +  F+  SK  T  DV        VT  DV+ +P VNT GVS+ R+D   GG NPPH HPR TE GIV RG++LVG++    T N ++SKV+  G  F+IPR L+HFQ NVGK  AT +  FN+QNPG+     TLF + PPI   VL K+ RV   V+  +
Sbjct:   21 PVLIRATDADPLQDFCVADLNSEVTVNGHACKPASAAGDEFLFS--SKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDTGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDAGVVELL 219          
BLAST of CX301616 vs. ExPASy Swiss-Prot
Match: OXO2_HORVU (Oxalate oxidase 2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.110e-43
Identity = 94/194 (48.45%), Postives = 122/194 (62.89%), Query Frame = 3
Query:  120 ASDPDPLQDVCLADLNAP-ISINGFPCKPASEVTSDDFFTD-FSKNPTTFDVFKRAVTLGDVSGFPAVNTQGVSLFRIDLDVGGINPPHTHPRGTEAGIVTRGKVLVGLV---TTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPISNEVLTKSFRVSDDVINAI 686
            ASDPDPLQD C+ADL+   +S+NG PCKP SE   D  F+   +K   T      AVT  DV+ +P  NT GVS+ R+D   GG NPPH HPR TE GIV +G++LVG++    + N  +S+V+  G  FLIPR L+HFQ NVGK  A+ +  FN+QNPG+     TLF + PPI   VLTK+ RV   V+  +
Sbjct:   23 ASDPDPLQDFCVADLDGKAVSVNGHPCKPMSEAGDDFLFSSKLAKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHVHPRATEIGIVMKGELLVGILGSLDSGNKLYSRVVRAGETFLIPRGLMHFQFNVGKTEASMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLTKALRVEAGVVELL 216          
BLAST of CX301616 vs. ExPASy Swiss-Prot
Match: GL36_ORYSJ (Germin-like protein 3-6 OS=Oryza sativa subsp. japonica GN=Os03g0694000 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.702e-43
Identity = 95/201 (47.26%), Postives = 124/201 (61.69%), Query Frame = 3
Query:  105 PFPSHASDPDPLQDVCLADLNAPISINGFPCKPASEVTSDDFFTDFSKNPTTFDVFKRA----VTLGDVSGFPAVNTQGVSLFRIDLDVGGINPPHTHPRGTEAGIVTRGKVLVGLV---TTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPISNEVLTKSFRVSDDVINAI 686
            P    A+D DPLQD C+ADL++ +++NG  CKPAS    +  F+  SK  T  DV        VT  DV+ +P VNT GVS+ R+D   GG NPPH HPR TE GIV RG++LVG++    T N ++SKV+  G  F+IPR L+HFQ NVGK  AT +  FN+QNPG+     TLF + PPI   VL K+ RV   V+  +
Sbjct:   23 PVLIRATDADPLQDFCVADLDSKVTVNGHACKPASAAGDEFLFS--SKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDTGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDAGVVELL 221          
BLAST of CX301616 vs. ExPASy Swiss-Prot
Match: GL34_ORYSJ (Putative germin-like protein 3-4 OS=Oryza sativa subsp. japonica GN=Os03g0693800 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.702e-43
Identity = 95/201 (47.26%), Postives = 124/201 (61.69%), Query Frame = 3
Query:  105 PFPSHASDPDPLQDVCLADLNAPISINGFPCKPASEVTSDDFFTDFSKNPTTFDVFKRA----VTLGDVSGFPAVNTQGVSLFRIDLDVGGINPPHTHPRGTEAGIVTRGKVLVGLVTT---NNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPISNEVLTKSFRVSDDVINAI 686
            P    A+D DPLQD C+ADL++ +++NG  CKPAS    +  F+  SK  T  DV        VT  DV+ +P VNT GVS+ R+D   GG NPPH HPR TE GIV RG++LVG++ T    N ++SKV+  G  F+IPR L+HFQ NVGK  AT +  FN+QNPG+     TLF + PPI   VL K+ RV   V+  +
Sbjct:   23 PVLIRATDADPLQDFCVADLDSKVTVNGHACKPASAAGDEFLFS--SKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDMGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDTGVVELL 221          
BLAST of CX301616 vs. ExPASy Swiss-Prot
Match: RHRE_PEA (Rhicadhesin receptor OS=Pisum sativum GN=GER1 PE=1 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 6.140e-43
Identity = 88/190 (46.32%), Postives = 119/190 (62.63%), Query Frame = 3
Query:  120 ASDPDPLQDVCLADLNAPISINGFPCKPASEVTSDDFFTDFS-KNPTTFDVFKRAVTLGDVSGFPAVNTQGVSLFRIDLDVGGINPPHTHPRGTEAGIVTRGKVLVGLVTTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPISNEVLTKSFRVSDDVINAI 686
            A+D D LQD+C+AD  + I +NGF CKPAS VT++DFF++   K   T + F   VT  +V   P +NT GVS+ RID   GG+NPPHTHPR TE   V  G++ VG +TT N   +K +  G  F+ P+ L+HFQ N G  PAT I  FN+Q PG  +   TLF+ TPP+ + VLTK+F++    +  I
Sbjct:   20 AADADALQDLCVADYASVILVNGFACKPASNVTAEDFFSNLLVKQGATNNTFGSLVTGANVQRIPGLNTLGVSMARIDYAPGGLNPPHTHPRATEMVFVLEGQLDVGFITTTNQLIAKTIAKGETFVFPKGLVHFQKNNGWEPATVIAGFNSQLPGTVNIPLTLFNATPPVPDNVLTKAFQIGTKEVQKI 209          
The following BLAST results are available for this feature:
BLAST of CX301616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL11_ORYSJ1.196e-4651.30Germin-like protein 1-1 OS=Oryza sativa subsp. jap... [more]
GLT2_ARATH2.039e-4650.78Germin-like protein subfamily T member 2 OS=Arabid... [more]
GL12_ORYSJ6.561e-4547.09Germin-like protein 1-2 OS=Oryza sativa subsp. jap... [more]
GL33_ORYSJ1.119e-4446.73Germin-like protein 3-3 OS=Oryza sativa subsp. jap... [more]
GLT1_ARATH1.237e-4349.47Germin-like protein subfamily T member 1 OS=Arabid... [more]
GL35_ORYSJ1.237e-4347.76Germin-like protein 3-5 OS=Oryza sativa subsp. jap... [more]
OXO2_HORVU2.110e-4348.45Oxalate oxidase 2 OS=Hordeum vulgare PE=2 SV=1[more]
GL36_ORYSJ4.702e-4347.26Germin-like protein 3-6 OS=Oryza sativa subsp. jap... [more]
GL34_ORYSJ4.702e-4347.26Putative germin-like protein 3-4 OS=Oryza sativa s... [more]
RHRE_PEA6.140e-4346.32Rhicadhesin receptor OS=Pisum sativum GN=GER1 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionC08011F12SK PhyRootSw1 Citrus sinensis cDNA clone C08011F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301616 ID=CX301616; Name=CX301616; organism=Citrus sinensis; type=EST; length=686bp
AATTCGGCACGAGGCTTAATTGATCCTACTCACAGTTAACCATGTATTCT
TCATCAGCGTCACTCTTTGAGCTGCTATGCGGCCTGATAGTGTTATTGCT
TCTCCCTTTCCCTTCCCATGCAAGTGACCCTGATCCTTTACAAGACGTCT
GTCTTGCGGACTTGAATGCCCCCATCTCTATCAATGGTTTCCCCTGCAAA
CCTGCTTCAGAAGTAACTTCTGATGATTTCTTCACTGATTTTTCCAAAAA
TCCGACCACATTTGATGTCTTTAAGCGTGCAGTTACACTTGGTGATGTTT
CTGGCTTTCCAGCGGTCAATACTCAAGGAGTTTCACTCTTCCGAATTGAC
CTGGATGTAGGTGGAATAAACCCACCTCATACACATCCTCGTGGAACTGA
GGCTGGCATTGTTACTCGAGGAAAGGTGCTTGTTGGGTTAGTAACAACTA
ATAATACCTTTTTCTCAAAGGTTTTGACTCCTGGGATGGTGTTCTTAATT
CCCAGAGCACTGATTCACTTCCAGCTAAATGTTGGAAAGGGGCCGGCCAC
CTTTATACCTATTTTCAATACTCAAAATCCTGGCGTTTCGGACTCACTCA
CTACTCTTTTTGATACAACACCCCCAATTTCCAATGAAGTGCTGACCAAA
TCGTTTCGAGTAAGTGATGATGTGATAAATGCCATC
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