CX301607

Overview
NameCX301607
Unique NameCX301607
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301607 vs. ExPASy Swiss-Prot
Match: RL262_ARATH (60S ribosomal protein L26-2 OS=Arabidopsis thaliana GN=RPL26B PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.521e-39
Identity = 83/146 (56.85%), Postives = 109/146 (74.66%), Query Frame = 2
Query:   44 KLNNNTTASRRKNRKAHFAATSVERRKRMSSPLSKDLFQRFHVRSIPVRKDDEVRVLRGKFKSTEGKVVEVYRKKYVIHVEKCTRDKANGQTIHVGIDASNVEITKLKMDKNRKAILDRK--NRVKIGQSKGAVPSSLHDNMAGVD 475
            K N   ++SRRKNRKAHF A S  RR  MSSPLSKDL  + +VRS+P+RKDDEV+V+RG FK  EGKV++VYR+K+VIH+E+ TR+K NG T++VG++ASNV ITKL++DK+RK++L+RK   R    + KG    S  D M  VD
Sbjct:    2 KFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRGTFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLERKANGRAAADKEKG-TKFSAEDVMENVD 146          
BLAST of CX301607 vs. ExPASy Swiss-Prot
Match: RL261_ARATH (60S ribosomal protein L26-1 OS=Arabidopsis thaliana GN=RPL26A PE=2 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 6.521e-39
Identity = 83/146 (56.85%), Postives = 110/146 (75.34%), Query Frame = 2
Query:   44 KLNNNTTASRRKNRKAHFAATSVERRKRMSSPLSKDLFQRFHVRSIPVRKDDEVRVLRGKFKSTEGKVVEVYRKKYVIHVEKCTRDKANGQTIHVGIDASNVEITKLKMDKNRKAILDR--KNRVKIGQSKGAVPSSLHDNMAGVD 475
            K N   T+SRRKNRKAHF A+S ERR  MSSPLS DL Q+++VRS+P+RKDDEV+++RG +K  EGKVV+VYR+K+VIH+E+ TR+K NG T++VGI  S V ITKL++DK+RK++L+R  K R    + KG   +S  D M  VD
Sbjct:    2 KYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLERKAKGRAAADKEKGTKFTS-EDVMQNVD 146          
BLAST of CX301607 vs. ExPASy Swiss-Prot
Match: RL26_DICDI (60S ribosomal protein L26 OS=Dictyostelium discoideum GN=rpl26 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 6.104e-37
Identity = 80/139 (57.55%), Postives = 102/139 (73.38%), Query Frame = 2
Query:   44 KLNNNTTASRRKNRKAHFAATSVERRKRMSSPLSKDLFQRFHVRSIPVRKDDEVRVLRGKFKSTEGKVVEVYRKKYVIHVEKCTRDKANGQTIHVGIDASNVEITKLKMDKNRKAILDRKNRVKIGQSKGAVPSSLHDN 460
            K N N ++SRRK+RKAHF A+S ERR RMS+ LS DL  +++VRS+P+RKDDEVRV+ G  K+ EGKVV  YRKKYVIH++K T  K NG T  +G+  SNV +TKLK+DK+RKA+L+RKNR  +   KG V  S   N
Sbjct:    2 KRNTNVSSSRRKSRKAHFTASSGERRIRMSAALSHDLRTKYNVRSLPIRKDDEVRVVCGDNKNHEGKVVACYRKKYVIHIDKLTVTKTNGNTAQIGVSPSNVILTKLKLDKDRKALLERKNRT-VAADKGKVKVSADVN 139          
BLAST of CX301607 vs. ExPASy Swiss-Prot
Match: RL26L_HUMAN (60S ribosomal protein L26-like 1 OS=Homo sapiens GN=RPL26L1 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.041e-36
Identity = 80/142 (56.34%), Postives = 106/142 (74.65%), Query Frame = 2
Query:   44 KLNNNTTASRRKNRKAHFAATSVERRKRMSSPLSKDLFQRFHVRSIPVRKDDEVRVLRGKFKSTE-GKVVEVYRKKYVIHVEKCTRDKANGQTIHVGIDASNVEITKLKMDKNRKAILDRKNRVK-IGQSKGAVPSSLHDNM 463
            K N   T+ R KNRK HF A S  RRK MSSPLSK+L Q+++VRS+P+RKDDEV+V+RG +K  + GKVV+VYRKKYVI++E+  R+KANG T+HVGI  S V IT+LK+DK+RK IL+RK + + +G+ KG     L + M
Sbjct:    2 KFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEELIEKM 143          
BLAST of CX301607 vs. ExPASy Swiss-Prot
Match: RL26_MOUSE (60S ribosomal protein L26 OS=Mus musculus GN=Rpl26 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.167e-36
Identity = 78/132 (59.09%), Postives = 103/132 (78.03%), Query Frame = 2
Query:   44 KLNNNTTASRRKNRKAHFAATSVERRKRMSSPLSKDLFQRFHVRSIPVRKDDEVRVLRGKFKSTE-GKVVEVYRKKYVIHVEKCTRDKANGQTIHVGIDASNVEITKLKMDKNRKAILDRKNRVK-IGQSKG 433
            K N   T+ R KNRK HF A S  RRK MSSPLSK+L Q+++VRS+P+RKDDEV+V+RG +K  + GKVV+VYRKKYVI++E+  R+KANG T+HVGI  S V IT+LK+DK+RK IL+RK + + +G+ KG
Sbjct:    2 KFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKG 133          
BLAST of CX301607 vs. ExPASy Swiss-Prot
Match: RL26_MACFA (60S ribosomal protein L26 OS=Macaca fascicularis GN=RPL26 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.167e-36
Identity = 78/132 (59.09%), Postives = 103/132 (78.03%), Query Frame = 2
Query:   44 KLNNNTTASRRKNRKAHFAATSVERRKRMSSPLSKDLFQRFHVRSIPVRKDDEVRVLRGKFKSTE-GKVVEVYRKKYVIHVEKCTRDKANGQTIHVGIDASNVEITKLKMDKNRKAILDRKNRVK-IGQSKG 433
            K N   T+ R KNRK HF A S  RRK MSSPLSK+L Q+++VRS+P+RKDDEV+V+RG +K  + GKVV+VYRKKYVI++E+  R+KANG T+HVGI  S V IT+LK+DK+RK IL+RK + + +G+ KG
Sbjct:    2 KFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKG 133          
BLAST of CX301607 vs. ExPASy Swiss-Prot
Match: RL26_HUMAN (60S ribosomal protein L26 OS=Homo sapiens GN=RPL26 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.167e-36
Identity = 78/132 (59.09%), Postives = 103/132 (78.03%), Query Frame = 2
Query:   44 KLNNNTTASRRKNRKAHFAATSVERRKRMSSPLSKDLFQRFHVRSIPVRKDDEVRVLRGKFKSTE-GKVVEVYRKKYVIHVEKCTRDKANGQTIHVGIDASNVEITKLKMDKNRKAILDRKNRVK-IGQSKG 433
            K N   T+ R KNRK HF A S  RRK MSSPLSK+L Q+++VRS+P+RKDDEV+V+RG +K  + GKVV+VYRKKYVI++E+  R+KANG T+HVGI  S V IT+LK+DK+RK IL+RK + + +G+ KG
Sbjct:    2 KFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKG 133          
BLAST of CX301607 vs. ExPASy Swiss-Prot
Match: RL26_BOVIN (60S ribosomal protein L26 OS=Bos taurus GN=RPL26 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.167e-36
Identity = 78/132 (59.09%), Postives = 103/132 (78.03%), Query Frame = 2
Query:   44 KLNNNTTASRRKNRKAHFAATSVERRKRMSSPLSKDLFQRFHVRSIPVRKDDEVRVLRGKFKSTE-GKVVEVYRKKYVIHVEKCTRDKANGQTIHVGIDASNVEITKLKMDKNRKAILDRKNRVK-IGQSKG 433
            K N   T+ R KNRK HF A S  RRK MSSPLSK+L Q+++VRS+P+RKDDEV+V+RG +K  + GKVV+VYRKKYVI++E+  R+KANG T+HVGI  S V IT+LK+DK+RK IL+RK + + +G+ KG
Sbjct:    2 KFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKG 133          
BLAST of CX301607 vs. ExPASy Swiss-Prot
Match: RL26_RAT (60S ribosomal protein L26 OS=Rattus norvegicus GN=Rpl26 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.749e-36
Identity = 78/132 (59.09%), Postives = 103/132 (78.03%), Query Frame = 2
Query:   44 KLNNNTTASRRKNRKAHFAATSVERRKRMSSPLSKDLFQRFHVRSIPVRKDDEVRVLRGKFKSTE-GKVVEVYRKKYVIHVEKCTRDKANGQTIHVGIDASNVEITKLKMDKNRKAILDRKNRVK-IGQSKG 433
            K N   T+ R KNRK HF A S  RRK MSSPLSK+L Q+++VRS+P+RKDDEV+V+RG +K  + GKVV+VYRKKYVI++E+  R+KANG T+HVGI  S V IT+LK+DK+RK IL+RK + + +G+ KG
Sbjct:    2 KFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIRPSKVVITRLKLDKDRKKILERKAKSRQVGKEKG 133          
BLAST of CX301607 vs. ExPASy Swiss-Prot
Match: RL26_AILME (60S ribosomal protein L26 OS=Ailuropoda melanoleuca GN=RPL26 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.151e-35
Identity = 76/136 (55.88%), Postives = 104/136 (76.47%), Query Frame = 2
Query:   62 TASRRKNRKAHFAATSVERRKRMSSPLSKDLFQRFHVRSIPVRKDDEVRVLRGKFKSTE-GKVVEVYRKKYVIHVEKCTRDKANGQTIHVGIDASNVEITKLKMDKNRKAILDRKNRVK-IGQSKGAVPSSLHDNM 463
            T+ R KNRK HF A S  RRK +SSPLSK+L Q+++VRS+P+RKDDEV+V+RG +K  + GKVV+VYRKKYVI++E+  R+KANG T+HVGI  S V IT+LK+DK+RK IL+RK + + +G+ KG      ++ M
Sbjct:    8 TSDRSKNRKRHFNAPSHIRRKTLSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEETNEKM 143          
The following BLAST results are available for this feature:
BLAST of CX301607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
RL262_ARATH6.521e-3956.8560S ribosomal protein L26-2 OS=Arabidopsis thalian... [more]
RL261_ARATH6.521e-3956.8560S ribosomal protein L26-1 OS=Arabidopsis thalian... [more]
RL26_DICDI6.104e-3757.5560S ribosomal protein L26 OS=Dictyostelium discoid... [more]
RL26L_HUMAN1.041e-3656.3460S ribosomal protein L26-like 1 OS=Homo sapiens G... [more]
RL26_MOUSE5.167e-3659.0960S ribosomal protein L26 OS=Mus musculus GN=Rpl26... [more]
RL26_MACFA5.167e-3659.0960S ribosomal protein L26 OS=Macaca fascicularis G... [more]
RL26_HUMAN5.167e-3659.0960S ribosomal protein L26 OS=Homo sapiens GN=RPL26... [more]
RL26_BOVIN5.167e-3659.0960S ribosomal protein L26 OS=Bos taurus GN=RPL26 P... [more]
RL26_RAT6.749e-3659.0960S ribosomal protein L26 OS=Rattus norvegicus GN=... [more]
RL26_AILME1.151e-3555.8860S ribosomal protein L26 OS=Ailuropoda melanoleuc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC08011F03SK PhyRootSw1 Citrus sinensis cDNA clone C08011F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301607 ID=CX301607; Name=CX301607; organism=Citrus sinensis; type=EST; length=763bp
ATCTTTATCAAGGAATATTTCCACATAATCAGCAAAGATGACCAAATTAA
ACAACAATACAACTGCTTCCCGAAGAAAGAACAGAAAGGCTCACTTCGCA
GCCACTTCTGTCGAAAGAAGGAAGAGAATGAGCAGTCCTTTATCCAAGGA
CTTATTCCAGCGATTCCACGTTCGCTCCATCCCTGTTAGAAAGGACGACG
AGGTCCGTGTGCTTCGTGGAAAGTTCAAGTCTACTGAGGGAAAGGTGGTG
GAAGTCTATCGTAAGAAGTACGTGATTCATGTCGAGAAGTGCACTCGCGA
CAAGGCTAACGGACAAACCATCCACGTGGGCATTGATGCATCAAACGTTG
AAATCACTAAGTTAAAGATGGACAAGAATCGCAAAGCTATCTTAGATCGC
AAGAATCGTGTGAAGATCGGTCAAAGCAAAGGTGCCGTTCCTTCCTCCTT
ACATGACAACATGGCTGGTGTTGATTAAAGTAGAAGTTGTAACGTTTGCT
CAAATCTATCAACACTACGCGAAGCCCTTGCTCCTGCTAATAATGTAAAT
CGCATCAACAAGAATATTGGCAGTTTGGAAATATTTCTAAAATAAAGAAT
GCATCACCCTCGTGCCGAATTCGGCACGAGGGTTTTCTGTCAATCAACTT
GCTGCCCTAGTTACAAAAGCAGGAGAGAAGCTTGGGCTTGACGTAAAACC
ATATCTGTCCCAACCCACGAGTAGAAGCAGAGGAGCATTATTACATGCAA
GCACACAAACTCA
back to top