CX301599

Overview
NameCX301599
Unique NameCX301599
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX301599 vs. ExPASy Swiss-Prot
Match: HERC2_DROME (Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.552e-12
Identity = 46/123 (37.40%), Postives = 67/123 (54.47%), Query Frame = 1 
Query:   13 GCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLG 381
            G LGHGN      P++V+AL   K   VA G   +  +S  G++Y++G GE   LGH          +   L P+LVT+L     RVVQ++  +    +A T ALTE G ++++G GD G+LG
Sbjct: 3103 GKLGHGNRTTLDKPRLVEALRAKKIRDVACGSSHSAAISSQGELYTWGLGEYGRLGH--------GDNTTQLKPKLVTAL--AGRRVVQVACGSR---DAQTLALTEDGAVFSWGDGDFGKLG 3212
The following BLAST results are available for this feature:
BLAST of CX301599 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
HERC2_DROME1.552e-1237.40Probable E3 ubiquitin-protein ligase HERC2 OS=Dros... [more]
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Properties
Property NameValue
Genbank descriptionC08011E06SK PhyRootSw1 Citrus sinensis cDNA clone C08011E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301599 ID=CX301599; Name=CX301599; organism=Citrus sinensis; type=EST; length=702bp
AATTCGGCACGAGGATGCTTGGGTCATGGAAATGAAGAGTGTGAATCAGT
TCCTAAGGTGGTGCAAGCATTGAACGATGTGAAAGCAATTCATGTTGCTA
CAGGGGACTACACAACCTTTGTGGTCTCTGAAGATGGTGATGTATATTCA
TTTGGTTGTGGTGAATCAGCTAGTCTTGGTCACAATGCTATTGCAGATGG
ACAGGGAAATAGACATGCAAATGTGTTGACTCCACAGCTAGTAACATCAT
TGAAGCAGGTCAACGAGCGGGTTGTACAGATCAGCCTGACCAATTCCATA
TATTGGAATGCCCATACTTTCGCACTCACTGAATCAGGAAAGCTATATGC
ATTTGGCGCAGGAGACAAGGGCCAGCTAGGCATAGAACTAGTTAACAATC
AAACCGAAAGGGGAAACCCGGAGAGGGTTGACATCGATCTCAGTTAGCAA
TTAAATGGCTTCACCAACCCTCATATCTGACACCGTGCCATATTGCCATT
CTGCTAATTCATCATTTAGACGTCTGCATTTGGTGTTTAGATTCCTTGTT
TATTTTGTAAATAGAAACAAAGAAAGAATTGTGAAGGTTCAAGTTTAGGC
ATAGCAGGGGCCATAGCAATGCAGGATGGTGCATGTTTGAAATATTGTTA
GCACATAGACATAGGCCTCTAGCCGAAGCTGTTAATATAGCTGATACATT
CG
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