CX301588

Overview
NameCX301588
Unique NameCX301588
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301588 vs. ExPASy Swiss-Prot
Match: WDR19_HUMAN (WD repeat-containing protein 19 OS=Homo sapiens GN=WDR19 PE=2 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 6.690e-37
Identity = 82/204 (40.20%), Postives = 127/204 (62.25%), Query Frame = 3
Query:   12 RKAMELLQIELATRIYVQLGDAGMVMALKQCELIEDKHLLAGQILLLFGDYQRAQDLFLSSSRPLTALEMRKDLIQWDQALKLAQILSPIQIPDICISYGQQLEARNEIDLSLKMYEEALHALDNDGNRVISDALIPTAMMGITRCQLRLGNVRQGIRQANELDDIQLFIECGTILENAKQYSEAASMYIKGKQYEKAALIYTK 623
            R  +  +++E A R+Y ++G+ G+VM+L+Q + IED +LLAG + +   DY  AQDL+L+SS P+ ALEMR+DL  WD AL+LA+ L+P QIP I   Y  QLE   +   +L  YE+ +   + + +           + G+ +  +R+G++R+G+ QA +     L  +CG ILEN KQ+SEAA +Y KG  Y+KAA +Y +
Sbjct:  683 RACLHHMEVEFAIRVYRRIGNVGIVMSLEQIKGIEDYNLLAGHLAMFTNDYNLAQDLYLASSCPIAALEMRRDLQHWDSALQLAKHLAPDQIPFISKEYAIQLEFAGDYVNALAHYEKGITGDNKEHDE--------ACLAGVAQMSIRMGDIRRGVNQALKHPSRVLKRDCGAILENMKQFSEAAQLYEKGLYYDKAASVYIR 878          
BLAST of CX301588 vs. ExPASy Swiss-Prot
Match: WDR19_MOUSE (WD repeat-containing protein 19 OS=Mus musculus GN=Wdr19 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.068e-34
Identity = 79/198 (39.90%), Postives = 123/198 (62.12%), Query Frame = 3
Query:   30 LQIELATRIYVQLGDAGMVMALKQCELIEDKHLLAGQILLLFGDYQRAQDLFLSSSRPLTALEMRKDLIQWDQALKLAQILSPIQIPDICISYGQQLEARNEIDLSLKMYEEALHALDNDGNRVISDALIPTAMMGITRCQLRLGNVRQGIRQANELDDIQLFIECGTILENAKQYSEAASMYIKGKQYEKAALIYTK 623
            +++E A R+   +GD G VM+L+Q + IED +LLAG + +   D+  AQDL+L+S+ P+ ALEMR+DL  WD AL+LA+ L+P QIP I   Y  QLE   +   +L  YE+ +   + + + V         + G+ +  +R+G++R+G  QA +     L  +CG ILEN KQ+SEAA +Y KG+ Y++AA +Y +
Sbjct:  689 MEVEFAIRVSRTMGDVGTVMSLEQIKGIEDYNLLAGHLAMFTNDFNLAQDLYLASNCPVAALEMRRDLQHWDSALQLAKRLAPDQIPFISKEYAIQLEFTGDYVNALAHYEKGITGDNKEHDEV--------CLAGVAQMSIRMGDIRRGANQALKHPSRVLKRDCGAILENMKQFSEAAQLYEKGQYYDRAASVYIR 878          
The following BLAST results are available for this feature:
BLAST of CX301588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
WDR19_HUMAN6.690e-3740.20WD repeat-containing protein 19 OS=Homo sapiens GN... [more]
WDR19_MOUSE1.068e-3439.90WD repeat-containing protein 19 OS=Mus musculus GN... [more]
back to top
Properties
Property NameValue
Genbank descriptionC08011D06SK PhyRootSw1 Citrus sinensis cDNA clone C08011D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301588 ID=CX301588; Name=CX301588; organism=Citrus sinensis; type=EST; length=692bp
AATTCGGCACGAGGAAAGCCATGGAATTACTACAGATTGAATTAGCAACA
CGTATTTATGTACAATTAGGTGATGCTGGTATGGTAATGGCATTAAAACA
ATGTGAATTAATTGAAGATAAACATCTATTAGCAGGACAAATCTTATTGT
TATTTGGTGATTATCAACGTGCACAAGATTTATTTTTATCATCTTCACGT
CCATTAACGGCTTTGGAAATGAGAAAAGATTTAATACAATGGGATCAAGC
ATTAAAATTAGCACAAATATTATCACCAATACAGATACCTGATATCTGTA
TCTCTTATGGACAACAGTTAGAAGCACGTAATGAAATTGATTTATCATTA
AAAATGTATGAAGAAGCGCTACATGCATTAGATAATGATGGTAATCGTGT
AATTTCTGATGCTTTAATACCGACTGCTATGATGGGGATAACGCGTTGTC
AATTGAGATTAGGGAATGTCAGACAAGGTATTCGACAAGCGAATGAATTA
GATGATATTCAGTTATTTATTGAATGTGGTACCATCTTAGAGAATGCTAA
ACAGTATTCTGAGGCAGCATCGATGTATATTAAAGGGAAACAATATGAGA
AAGCAGCATTAATCTATACTAAATATTTGATTAANAATGATAAAAATCGT
ATTAATGAAATGTTATTAATTATTGATAAAAGTAATAATGAT
back to top