CX301585

Overview
NameCX301585
Unique NameCX301585
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301585 vs. ExPASy Swiss-Prot
Match: TCPD_DICDI (T-complex protein 1 subunit delta OS=Dictyostelium discoideum GN=cct4 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.032e-23
Identity = 54/66 (81.82%), Postives = 60/66 (90.91%), Query Frame = 3
Query:   24 LAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 221
            ++IVTELRN+HAQGEINSGINVRKG ITNIL+ENVVQPLLVSTSA+TLA E V M+LKIDDI T R
Sbjct:  468 ISIVTELRNKHAQGEINSGINVRKGAITNILQENVVQPLLVSTSALTLATETVVMLLKIDDIATAR 533          
BLAST of CX301585 vs. ExPASy Swiss-Prot
Match: TCPD_AEDTR (T-complex protein 1 subunit delta OS=Aedes triseriatus PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.466e-20
Identity = 51/63 (80.95%), Postives = 57/63 (90.48%), Query Frame = 3
Query:   24 LAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIV 212
            +A VTELRNRHAQGE N+GINVRKG IT+IL ENVVQPLLVSTS+ITLA+E VR ILKIDDI+
Sbjct:  467 IATVTELRNRHAQGEKNAGINVRKGAITDILAENVVQPLLVSTSSITLASETVRSILKIDDII 529          
BLAST of CX301585 vs. ExPASy Swiss-Prot
Match: TCPD_BOVIN (T-complex protein 1 subunit delta OS=Bos taurus GN=CCT4 PE=2 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 1.621e-19
Identity = 49/66 (74.24%), Postives = 55/66 (83.33%), Query Frame = 3
Query:   24 LAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 221
            ++ VTELRNRHAQGE  +GINVRKG I+NILEE VVQPLLVS SA+TLA E VR ILKIDD+V  R
Sbjct:  477 ISTVTELRNRHAQGEKTTGINVRKGGISNILEEQVVQPLLVSVSALTLATETVRSILKIDDVVNTR 542          
BLAST of CX301585 vs. ExPASy Swiss-Prot
Match: TCPD_RAT (T-complex protein 1 subunit delta OS=Rattus norvegicus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 2.765e-19
Identity = 49/66 (74.24%), Postives = 55/66 (83.33%), Query Frame = 3
Query:   24 LAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 221
            ++ VTELRNRHAQGE  +GINVRKG I+NILEE VVQPLLVS SA+TLA E VR ILKIDD+V  R
Sbjct:  474 ISTVTELRNRHAQGEKTTGINVRKGGISNILEEMVVQPLLVSVSALTLATETVRSILKIDDVVNTR 539          
BLAST of CX301585 vs. ExPASy Swiss-Prot
Match: TCPD_MOUSE (T-complex protein 1 subunit delta OS=Mus musculus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 2.765e-19
Identity = 49/66 (74.24%), Postives = 55/66 (83.33%), Query Frame = 3
Query:   24 LAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 221
            ++ VTELRNRHAQGE  +GINVRKG I+NILEE VVQPLLVS SA+TLA E VR ILKIDD+V  R
Sbjct:  474 ISTVTELRNRHAQGEKTTGINVRKGGISNILEEMVVQPLLVSVSALTLATETVRSILKIDDVVNTR 539          
BLAST of CX301585 vs. ExPASy Swiss-Prot
Match: TCPD_PONAB (T-complex protein 1 subunit delta OS=Pongo abelii GN=CCT4 PE=2 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 3.612e-19
Identity = 49/66 (74.24%), Postives = 55/66 (83.33%), Query Frame = 3
Query:   24 LAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 221
            ++ VTELRNRHAQGE  +GINVRKG I+NILEE VVQPLLVS SA+TLA E VR ILKIDD+V  R
Sbjct:  474 ISTVTELRNRHAQGEKTAGINVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDVVNTR 539          
BLAST of CX301585 vs. ExPASy Swiss-Prot
Match: TCPD_HUMAN (T-complex protein 1 subunit delta OS=Homo sapiens GN=CCT4 PE=1 SV=4)

HSP 1 Score: 94.7449 bits (234), Expect = 3.612e-19
Identity = 49/66 (74.24%), Postives = 55/66 (83.33%), Query Frame = 3
Query:   24 LAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 221
            ++ VTELRNRHAQGE  +GINVRKG I+NILEE VVQPLLVS SA+TLA E VR ILKIDD+V  R
Sbjct:  474 ISTVTELRNRHAQGEKTAGINVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDVVNTR 539          
BLAST of CX301585 vs. ExPASy Swiss-Prot
Match: TCPD_TAKRU (T-complex protein 1 subunit delta OS=Takifugu rubripes GN=cct4 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.057e-18
Identity = 47/66 (71.21%), Postives = 55/66 (83.33%), Query Frame = 3
Query:   24 LAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 221
            ++ VTELRNRHAQG+  +GINVRKG I+NI+EE VVQPLLVS SA+TLA E VR ILKIDD+V  R
Sbjct:  471 ISTVTELRNRHAQGDKMAGINVRKGGISNIMEELVVQPLLVSISALTLATETVRSILKIDDVVNAR 536          
BLAST of CX301585 vs. ExPASy Swiss-Prot
Match: TCPD_SCHPO (T-complex protein 1 subunit delta OS=Schizosaccharomyces pombe GN=cct4 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 6.811e-18
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 3
Query:   24 LAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 221
            + +VTELR+RHA GE  +GINVRKG +TNILEENV+QPLLV+ SAI LAAE  +MI+KIDDI   R
Sbjct:  462 IQVVTELRSRHANGEKTAGINVRKGIVTNILEENVLQPLLVNISAIQLAAETTKMIMKIDDITLAR 527          
BLAST of CX301585 vs. ExPASy Swiss-Prot
Match: TCPD_CAEEL (T-complex protein 1 subunit delta OS=Caenorhabditis elegans GN=cct-4 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.375e-16
Identity = 41/60 (68.33%), Postives = 50/60 (83.33%), Query Frame = 3
Query:   33 VTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIV 212
            VTELRN HA G  + G+NVRKG +T+++EE+VVQPLLV+ SAI  A+ECVR ILKIDDIV
Sbjct:  477 VTELRNNHANGNSSYGVNVRKGYVTDMVEEDVVQPLLVTASAIKQASECVRSILKIDDIV 536          
The following BLAST results are available for this feature:
BLAST of CX301585 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
TCPD_DICDI7.032e-2381.82T-complex protein 1 subunit delta OS=Dictyostelium... [more]
TCPD_AEDTR1.466e-2080.95T-complex protein 1 subunit delta OS=Aedes triseri... [more]
TCPD_BOVIN1.621e-1974.24T-complex protein 1 subunit delta OS=Bos taurus GN... [more]
TCPD_RAT2.765e-1974.24T-complex protein 1 subunit delta OS=Rattus norveg... [more]
TCPD_MOUSE2.765e-1974.24T-complex protein 1 subunit delta OS=Mus musculus ... [more]
TCPD_PONAB3.612e-1974.24T-complex protein 1 subunit delta OS=Pongo abelii ... [more]
TCPD_HUMAN3.612e-1974.24T-complex protein 1 subunit delta OS=Homo sapiens ... [more]
TCPD_TAKRU3.057e-1871.21T-complex protein 1 subunit delta OS=Takifugu rubr... [more]
TCPD_SCHPO6.811e-1868.18T-complex protein 1 subunit delta OS=Schizosacchar... [more]
TCPD_CAEEL6.375e-1668.33T-complex protein 1 subunit delta OS=Caenorhabditi... [more]

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Properties
Property NameValue
Genbank descriptionC08011D03SK PhyRootSw1 Citrus sinensis cDNA clone C08011D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301585 ID=CX301585; Name=CX301585; organism=Citrus sinensis; type=EST; length=598bp
CTCGTGCCGAATTCGGCACGAGGCTTGCCATTGTGACTGAACTGAGGAAC
AGGCATGCACAAGGGGAAATCAATTCTGGAATCAATGTGAGGAAGGGGCA
GATTACCAATATTTTGGAGGAGAATGTGGTGCAGCCACTGCTTGTGAGCA
CAAGTGCAATAACACTGGCTGCAGAGTGTGTAAGGATGATTTTGAAGATT
GATGACATCGTTACTGTGAGGTAGTTTTGCATCCAAAGATGAAAGTGTGT
TCCCTACTTATGTTTTGCGTCCTTGTATTATCTGAATTAGTAAGCTCTGT
TTTAGGATTGATTGCTGTTAAGAGTTTTGACTTTGTTATTTTTGTTGCCA
AATATTTGGTTTGAATTTGCTGTTTTATGGTTAATTAGCAGTCGAATGAC
TGATTAACTACTATTTCAGCCTTTATATGTTTTACCTTGTGAGAAGCTCT
AATCAGATCTATGCTTAGGCAAATTGATGACTGCTATTGATTTATCATCT
GCTTTATGATAGCTGTATGTGACATACATTAACTTGTTCATACATTATGT
TTTCATCAGAAGATCACTTCTTTGAGACGAANAANAAAAAAAAAAAAA
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