CX301583

Overview
NameCX301583
Unique NameCX301583
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length520
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301583 vs. ExPASy Swiss-Prot
Match: RS262_ARATH (40S ribosomal protein S26-2 OS=Arabidopsis thaliana GN=RPS26B PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 1.395e-28
Identity = 56/88 (63.64%), Postives = 70/88 (79.55%), Query Frame = 3
Query:   45 MTVKRRNHGRDKHGRGHVDRVRCSSTAKAIPKDKAIKRFLVRNIVDTSALRDIKDASAFEGYQLPKLYIKQYYCVEAAVHQRIVRVRS 308
            MT KRRN GR+KH RGHV+ +RCS+  K  PKDKAIKRF+VRNIV+ +A+RD+++AS +EGY LPKLY K  YCV  A+H  +VRVRS
Sbjct:    1 MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSHVVRVRS 88          
BLAST of CX301583 vs. ExPASy Swiss-Prot
Match: RS261_ARATH (40S ribosomal protein S26-1 OS=Arabidopsis thaliana GN=RPS26A PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 1.395e-28
Identity = 56/88 (63.64%), Postives = 70/88 (79.55%), Query Frame = 3
Query:   45 MTVKRRNHGRDKHGRGHVDRVRCSSTAKAIPKDKAIKRFLVRNIVDTSALRDIKDASAFEGYQLPKLYIKQYYCVEAAVHQRIVRVRS 308
            MT KRRN GR+KH RGHV+ +RCS+  K  PKDKAIKRF+VRNIV+ +A+RD+++AS +EGY LPKLY K  YCV  A+H  +VRVRS
Sbjct:    1 MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSHVVRVRS 88          
BLAST of CX301583 vs. ExPASy Swiss-Prot
Match: RS263_ARATH (40S ribosomal protein S26-3 OS=Arabidopsis thaliana GN=RPS26C PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.380e-28
Identity = 56/88 (63.64%), Postives = 69/88 (78.41%), Query Frame = 3
Query:   45 MTVKRRNHGRDKHGRGHVDRVRCSSTAKAIPKDKAIKRFLVRNIVDTSALRDIKDASAFEGYQLPKLYIKQYYCVEAAVHQRIVRVRS 308
            MT KRRN GR+KH RGHV  +RCS+  K  PKDKAIKRF+VRNIV+ +A+RD+++AS +EGY LPKLY K  YCV  A+H  +VRVRS
Sbjct:    1 MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSHVVRVRS 88          
BLAST of CX301583 vs. ExPASy Swiss-Prot
Match: RS26B_SCHPO (40S ribosomal protein S26-B OS=Schizosaccharomyces pombe GN=rps26b PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.181e-27
Identity = 54/88 (61.36%), Postives = 72/88 (81.82%), Query Frame = 3
Query:   45 MTVKRRNHGRDKHGRGHVDRVRCSSTAKAIPKDKAIKRFLVRNIVDTSALRDIKDASAFEGYQLPKLYIKQYYCVEAAVHQRIVRVRS 308
            MT KRRN+GR+KHGRGHV  VRC + ++A+PKDKAIKR+ +RN+V+T+A+RD+ +AS +  Y +PKLYIK  YCV  A+H R+VRVRS
Sbjct:    1 MTQKRRNNGRNKHGRGHVKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYSEYTIPKLYIKLQYCVSCAIHSRVVRVRS 88          
BLAST of CX301583 vs. ExPASy Swiss-Prot
Match: RS26_ORYSJ (40S ribosomal protein S26 OS=Oryza sativa subsp. japonica GN=RPS26 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 3.436e-27
Identity = 56/88 (63.64%), Postives = 69/88 (78.41%), Query Frame = 3
Query:   45 MTVKRRNHGRDKHGRGHVDRVRCSSTAKAIPKDKAIKRFLVRNIVDTSALRDIKDASAFEGYQLPKLYIKQYYCVEAAVHQRIVRVRS 308
            MT KRRN GR+KHGRGHV  +RCS+ AK  PKDKAIKRF VRNIV+ +A+RD+++A   +GY LPKLY K ++CV  A+H  IVRVRS
Sbjct:    1 MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAHIVRVRS 88          
BLAST of CX301583 vs. ExPASy Swiss-Prot
Match: RS26_RAT (40S ribosomal protein S26 OS=Rattus norvegicus GN=Rps26 PE=3 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 5.861e-27
Identity = 52/88 (59.09%), Postives = 71/88 (80.68%), Query Frame = 3
Query:   45 MTVKRRNHGRDKHGRGHVDRVRCSSTAKAIPKDKAIKRFLVRNIVDTSALRDIKDASAFEGYQLPKLYIKQYYCVEAAVHQRIVRVRS 308
            MT KRRN+GR K GRGHV  +RC++ A+ +PKDKAIK+F++RNIV+ +A+RDI +AS F+ Y LPKLY+K +YCV  A+H ++VR RS
Sbjct:    1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHSKVVRNRS 88          
BLAST of CX301583 vs. ExPASy Swiss-Prot
Match: RS26_PIG (40S ribosomal protein S26 OS=Sus scrofa GN=RPS26 PE=3 SV=4)

HSP 1 Score: 120.168 bits (300), Expect = 5.861e-27
Identity = 52/88 (59.09%), Postives = 71/88 (80.68%), Query Frame = 3
Query:   45 MTVKRRNHGRDKHGRGHVDRVRCSSTAKAIPKDKAIKRFLVRNIVDTSALRDIKDASAFEGYQLPKLYIKQYYCVEAAVHQRIVRVRS 308
            MT KRRN+GR K GRGHV  +RC++ A+ +PKDKAIK+F++RNIV+ +A+RDI +AS F+ Y LPKLY+K +YCV  A+H ++VR RS
Sbjct:    1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHSKVVRNRS 88          
BLAST of CX301583 vs. ExPASy Swiss-Prot
Match: RS26_MOUSE (40S ribosomal protein S26 OS=Mus musculus GN=Rps26 PE=2 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 5.861e-27
Identity = 52/88 (59.09%), Postives = 71/88 (80.68%), Query Frame = 3
Query:   45 MTVKRRNHGRDKHGRGHVDRVRCSSTAKAIPKDKAIKRFLVRNIVDTSALRDIKDASAFEGYQLPKLYIKQYYCVEAAVHQRIVRVRS 308
            MT KRRN+GR K GRGHV  +RC++ A+ +PKDKAIK+F++RNIV+ +A+RDI +AS F+ Y LPKLY+K +YCV  A+H ++VR RS
Sbjct:    1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHSKVVRNRS 88          
BLAST of CX301583 vs. ExPASy Swiss-Prot
Match: RS26_MACFA (40S ribosomal protein S26 OS=Macaca fascicularis GN=RPS26 PE=3 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 5.861e-27
Identity = 52/88 (59.09%), Postives = 71/88 (80.68%), Query Frame = 3
Query:   45 MTVKRRNHGRDKHGRGHVDRVRCSSTAKAIPKDKAIKRFLVRNIVDTSALRDIKDASAFEGYQLPKLYIKQYYCVEAAVHQRIVRVRS 308
            MT KRRN+GR K GRGHV  +RC++ A+ +PKDKAIK+F++RNIV+ +A+RDI +AS F+ Y LPKLY+K +YCV  A+H ++VR RS
Sbjct:    1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHSKVVRNRS 88          
BLAST of CX301583 vs. ExPASy Swiss-Prot
Match: RS26_HUMAN (40S ribosomal protein S26 OS=Homo sapiens GN=RPS26 PE=1 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 5.861e-27
Identity = 52/88 (59.09%), Postives = 71/88 (80.68%), Query Frame = 3
Query:   45 MTVKRRNHGRDKHGRGHVDRVRCSSTAKAIPKDKAIKRFLVRNIVDTSALRDIKDASAFEGYQLPKLYIKQYYCVEAAVHQRIVRVRS 308
            MT KRRN+GR K GRGHV  +RC++ A+ +PKDKAIK+F++RNIV+ +A+RDI +AS F+ Y LPKLY+K +YCV  A+H ++VR RS
Sbjct:    1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHSKVVRNRS 88          
The following BLAST results are available for this feature:
BLAST of CX301583 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RS262_ARATH1.395e-2863.6440S ribosomal protein S26-2 OS=Arabidopsis thalian... [more]
RS261_ARATH1.395e-2863.6440S ribosomal protein S26-1 OS=Arabidopsis thalian... [more]
RS263_ARATH2.380e-2863.6440S ribosomal protein S26-3 OS=Arabidopsis thalian... [more]
RS26B_SCHPO1.181e-2761.3640S ribosomal protein S26-B OS=Schizosaccharomyces... [more]
RS26_ORYSJ3.436e-2763.6440S ribosomal protein S26 OS=Oryza sativa subsp. j... [more]
RS26_RAT5.861e-2759.0940S ribosomal protein S26 OS=Rattus norvegicus GN=... [more]
RS26_PIG5.861e-2759.0940S ribosomal protein S26 OS=Sus scrofa GN=RPS26 P... [more]
RS26_MOUSE5.861e-2759.0940S ribosomal protein S26 OS=Mus musculus GN=Rps26... [more]
RS26_MACFA5.861e-2759.0940S ribosomal protein S26 OS=Macaca fascicularis G... [more]
RS26_HUMAN5.861e-2759.0940S ribosomal protein S26 OS=Homo sapiens GN=RPS26... [more]

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Properties
Property NameValue
Genbank descriptionC08011D01SK PhyRootSw1 Citrus sinensis cDNA clone C08011D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301583 ID=CX301583; Name=CX301583; organism=Citrus sinensis; type=EST; length=520bp
AATTCGGCACGAGGCCTCGTGCCGAATTCGGCACGAGGCAAGAAATGACT
GTCAAGAGAAGAAACCACGGAAGAGACAAGCACGGAAGAGGTCATGTTGA
TCGTGTTAGATGCTCCTCTACCGCCAAGGCTATCCCAAAGGATAAGGCTA
TCAAGAGATTCTTAGTTAGAAACATCGTTGATACCTCCGCTCTTCGTGAT
ATCAAGGATGCCTCTGCTTTCGAGGGATACCAATTACCAAAGCTTTACAT
CAAACAATACTACTGCGTTGAAGCTGCTGTCCACCAAAGAATTGTCCGTG
TCCGATCTACCATTGACCGCAAGAACCGTGCTCCTCCAGCCCGCAAGCCA
GCTGCCAAGAACTAAGCAATTTTCTTTCGTAACCGCTGTCTACATCCTCA
AGTCAAATGTATCCACTCTTCTCCCAATTATCAGCATTCTTCATACATAA
TAATTCGATGTAAATCGATCTTCTTCCAATAATTTTAAAAAAAGGAAAAA
AACAAAAAAAAAAAAAAAAA
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