CX301579

Overview
NameCX301579
Unique NameCX301579
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5593 contig Csv1_Contig5593:206..593. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX301579 vs. ExPASy Swiss-Prot
Match: RL37A_ORYSJ (60S ribosomal protein L37a OS=Oryza sativa subsp. japonica GN=Os01g0679700 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.152e-19
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 2
Query:   14 AVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 154
            AVKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTE+
Sbjct:   46 AVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTEA 92          
BLAST of CX301579 vs. ExPASy Swiss-Prot
Match: RL37A_GOSHI (60S ribosomal protein L37a OS=Gossypium hirsutum GN=RPL37A PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.567e-19
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 2
Query:   14 AVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 154
            AVKRKAVGIWGCK CGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct:   46 AVKRKAVGIWGCKACGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92          
BLAST of CX301579 vs. ExPASy Swiss-Prot
Match: RL37A_PSEMZ (60S ribosomal protein L37a OS=Pseudotsuga menziesii GN=RPL37A PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.353e-19
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 2
Query:   14 AVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 151
            AVKRKAVGIWGCKDCGKVKAGGAYTLNT SAVTVRSTIRRLREQTE
Sbjct:   46 AVKRKAVGIWGCKDCGKVKAGGAYTLNTPSAVTVRSTIRRLREQTE 91          
BLAST of CX301579 vs. ExPASy Swiss-Prot
Match: R37A1_ARATH (Putative 60S ribosomal protein L37a-1 OS=Arabidopsis thaliana GN=RPL37AB PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.353e-19
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = 2
Query:   14 AVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 154
            +VKRK VGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTES
Sbjct:   46 SVKRKVVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTES 92          
BLAST of CX301579 vs. ExPASy Swiss-Prot
Match: R37A2_ARATH (60S ribosomal protein L37a-2 OS=Arabidopsis thaliana GN=RPL37AC PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.174e-18
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 2
Query:   17 VKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 151
            VKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQ E
Sbjct:   47 VKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQIE 91          
BLAST of CX301579 vs. ExPASy Swiss-Prot
Match: RL37A_BRARA (60S ribosomal protein L37a OS=Brassica rapa GN=RPL37A PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.354e-17
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 2
Query:   17 VKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRS-TIRRLREQTE 151
            VKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRS TIRRLREQ E
Sbjct:   47 VKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSHTIRRLREQIE 92          
BLAST of CX301579 vs. ExPASy Swiss-Prot
Match: RL37A_OSTLU (60S ribosomal protein L37a OS=Ostreococcus lucimarinus (strain CCE9901) GN=RPL37a PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.236e-14
Identity = 35/45 (77.78%), Postives = 38/45 (84.44%), Query Frame = 2
Query:   17 VKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 151
            +KRKAVGIW CK C K KAGGAY+LNT  +VTVRSTIRRLRE TE
Sbjct:   47 MKRKAVGIWSCKGCNKTKAGGAYSLNTGGSVTVRSTIRRLREATE 91          
BLAST of CX301579 vs. ExPASy Swiss-Prot
Match: RL37A_OSTTA (60S ribosomal protein L37a OS=Ostreococcus tauri GN=RPL37a PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.690e-13
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 2
Query:   17 VKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 151
            +KR+AVGIW CK C K KAGGAY+LNT  +VTVRSTIRRLRE TE
Sbjct:   47 MKRQAVGIWCCKGCNKTKAGGAYSLNTGGSVTVRSTIRRLREATE 91          
BLAST of CX301579 vs. ExPASy Swiss-Prot
Match: RL37A_CRYST (60S ribosomal protein L37a OS=Cryptochiton stelleri GN=RPL37A PE=3 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 5.185e-12
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = 2
Query:   11 EAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 154
            +A+KR+AVGIWGCK C KV AGGA+  +T +AVTVRS +RRLRE  ES
Sbjct:   45 DAMKRQAVGIWGCKSCRKVVAGGAWVYSTMAAVTVRSAVRRLREMKES 92          
BLAST of CX301579 vs. ExPASy Swiss-Prot
Match: RL43_ASHGO (60S ribosomal protein L43 OS=Ashbya gossypii GN=RPL43 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.509e-11
Identity = 32/48 (66.67%), Postives = 36/48 (75.00%), Query Frame = 2
Query:   11 EAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 154
            +AVKR A GIW C  C K  AGGAYT +TA+A TVRSTIRRLRE  E+
Sbjct:   45 KAVKRGAAGIWNCSSCKKTVAGGAYTFSTAAAATVRSTIRRLREMAEA 92          
The following BLAST results are available for this feature:
BLAST of CX301579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
RL37A_ORYSJ1.152e-1995.7460S ribosomal protein L37a OS=Oryza sativa subsp. ... [more]
RL37A_GOSHI2.567e-1997.8760S ribosomal protein L37a OS=Gossypium hirsutum G... [more]
RL37A_PSEMZ3.353e-1997.8360S ribosomal protein L37a OS=Pseudotsuga menziesi... [more]
R37A1_ARATH3.353e-1993.62Putative 60S ribosomal protein L37a-1 OS=Arabidops... [more]
R37A2_ARATH2.174e-1895.5660S ribosomal protein L37a-2 OS=Arabidopsis thalia... [more]
RL37A_BRARA5.354e-1793.4860S ribosomal protein L37a OS=Brassica rapa GN=RPL... [more]
RL37A_OSTLU7.236e-1477.7860S ribosomal protein L37a OS=Ostreococcus lucimar... [more]
RL37A_OSTTA4.690e-1375.5660S ribosomal protein L37a OS=Ostreococcus tauri G... [more]
RL37A_CRYST5.185e-1266.6760S ribosomal protein L37a OS=Cryptochiton steller... [more]
RL43_ASHGO1.509e-1166.6760S ribosomal protein L43 OS=Ashbya gossypii GN=RP... [more]
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Properties
Property NameValue
Genbank descriptionC08011C09SK PhyRootSw1 Citrus sinensis cDNA clone C08011C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301579 ID=CX301579; Name=CX301579; organism=Citrus sinensis; type=EST; length=388bp
AATTCGGCACGAGGCGGTGAAGAGGAAAGCTGTTGGCATTTGGGGCTGCA
AGGACTGTGGGAAAGTCAAGGCAGGCGGTGCCTACACTTTGAACACTGCT
AGTGCTGTGACTGTGAGGAGCACAATCCGTAGGTTGAGGGAGCAAACTGA
AAGCTGAGCTTGCCACCATTGGCTTACTCCCGTGTCTTAGGTCGTTTGAT
CTTTAGTTTCGGATACAACCTTAAATCATTTTTGATGTTGCTTTATTTCT
AGATGCAAAACAATTGGTTGTTGGAACATGAAACTTTTGGCTGTGTTTTG
ACTCTTGAGATGTTCATTCGCTATTTTTCCTATGAAATTATGTTATCTAG
TGGGTTTTCCTATGAAAAAAAAAAAAAAAAAAAAAAAA
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