CX301576

Overview
NameCX301576
Unique NameCX301576
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301576 vs. ExPASy Swiss-Prot
Match: UGDH2_ARATH (Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidopsis thaliana GN=UGD2 PE=2 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 1.713e-73
Identity = 136/199 (68.34%), Postives = 165/199 (82.91%), Query Frame = 2
Query:  143 LKICCMGAGYVGGPTMAVIALKAPRIKVTVVDLSEKQIAAWNSSSLPIYEPGLQEIVEQVRGKNLFFSTDIDTGIREADIIFVSVNTPTKTTGIGAGRAANIKNCELCARKIAEVATEDKIVVEKSTVPVRTAESMKRVLAAASH-YKFQVLSNPEFLAEGTAINDLLFPSRVLIGGEQTPDGLRAIETLVSVYANWVP 736
            +KICC+GAGYVGGPTMAVIALK P I+V VVD+S  +I AWNS  LPIYEPGL +IV+Q RGKNLFFSTD++  +READI+FVSVNTPTKTTG+GAG+AA++   E  AR IA+V+  DKIVVEKSTVPV+TAE+++++L   S   KFQ+LSNPEFLAEGTAI DL  P RVLIGG +TP+G +A++TL  VYANWVP
Sbjct:    2 VKICCIGAGYVGGPTMAVIALKCPDIEVAVVDISVPRINAWNSDQLPIYEPGLDDIVKQCRGKNLFFSTDVEKHVREADIVFVSVNTPTKTTGLGAGKAADLTYWESAARMIADVSVSDKIVVEKSTVPVKTAEAIEKILMHNSKGIKFQILSNPEFLAEGTAIADLFNPDRVLIGGRETPEGFKAVQTLKEVYANWVP 200          
BLAST of CX301576 vs. ExPASy Swiss-Prot
Match: UGDH1_ARATH (Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidopsis thaliana GN=UGD1 PE=1 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.450e-72
Identity = 132/199 (66.33%), Postives = 166/199 (83.42%), Query Frame = 2
Query:  143 LKICCMGAGYVGGPTMAVIALKAPRIKVTVVDLSEKQIAAWNSSSLPIYEPGLQEIVEQVRGKNLFFSTDIDTGIREADIIFVSVNTPTKTTGIGAGRAANIKNCELCARKIAEVATEDKIVVEKSTVPVRTAESMKRVLAAASH-YKFQVLSNPEFLAEGTAINDLLFPSRVLIGGEQTPDGLRAIETLVSVYANWVP 736
            +KICC+GAGYVGGPTMAVIALK P ++V VVD+S  +I AWNS +LPIYEPGL ++V+Q RGKNLFFSTD++  +READI+FVSVNTPTKT G+GAG+AA++   E  AR IA+V+  DKIVVEKSTVPV+TAE+++++L   S   KFQ+LSNPEFLAEGTAI DL  P RVLIGG +TP+G +A++TL +VYA+WVP
Sbjct:    2 VKICCIGAGYVGGPTMAVIALKCPDVEVAVVDISVPRINAWNSDTLPIYEPGLDDVVKQCRGKNLFFSTDVEKHVREADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSVSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGFKAVQTLKNVYAHWVP 200          
BLAST of CX301576 vs. ExPASy Swiss-Prot
Match: UGDH_SOYBN (UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 5.510e-72
Identity = 134/199 (67.34%), Postives = 163/199 (81.91%), Query Frame = 2
Query:  143 LKICCMGAGYVGGPTMAVIALKAPRIKVTVVDLSEKQIAAWNSSSLPIYEPGLQEIVEQVRGKNLFFSTDIDTGIREADIIFVSVNTPTKTTGIGAGRAANIKNCELCARKIAEVATEDKIVVEKSTVPVRTAESMKRVLAAASH-YKFQVLSNPEFLAEGTAINDLLFPSRVLIGGEQTPDGLRAIETLVSVYANWVP 736
            +KICC+GAGYVGGPTMAVIALK P I+V VVD+S+ +IAAWNS  LPIYEPGL  +V+Q RGKNLFFSTD++  + EADI+FVSVNTPTKT G+GAG+AA++   E  AR IA+V+  DKIVVEKSTVPV+TAE+++++L   S   KFQ+LSNPEFLAEGTAI DL  P RVLIGG +TP+G +AI+TL  VYA WVP
Sbjct:    2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISKSRIAAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVFEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGQKAIQTLKDVYAQWVP 200          
BLAST of CX301576 vs. ExPASy Swiss-Prot
Match: UGDH_RAT (UDP-glucose 6-dehydrogenase OS=Rattus norvegicus GN=Ugdh PE=1 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 5.702e-69
Identity = 128/200 (64.00%), Postives = 160/200 (80.00%), Query Frame = 2
Query:  146 KICCMGAGYVGGPTMAVIALKAPRIKVTVVDLSEKQIAAWNSSSLPIYEPGLQEIVEQVRGKNLFFSTDIDTGIREADIIFVSVNTPTKTTGIGAGRAANIKNCELCARKIAEVATEDKIVVEKSTVPVRTAESMKRVLAAAS--HYKFQVLSNPEFLAEGTAINDLLFPSRVLIGGEQTPDGLRAIETLVSVYANWVPR 739
            KICC+GAGYVGGPT +VIA   P I+VTVVD++E +I AWNS +LPIYEPGL+E+VE  RGKNLFFST+ID  IREAD++F+SVNTPTKT G+G GRAA++K  E CAR+I + +   KIV EKSTVPVR AES++R+  A +  +   QVLSNPEFLAEGTAI DL  P RVLIGG++TP+G RA++ L +VY +WVP+
Sbjct:    6 KICCIGAGYVGGPTCSVIARMCPEIRVTVVDVNEARINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIREADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPK 205          
BLAST of CX301576 vs. ExPASy Swiss-Prot
Match: UGDH_HUMAN (UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGDH PE=1 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 5.702e-69
Identity = 128/200 (64.00%), Postives = 160/200 (80.00%), Query Frame = 2
Query:  146 KICCMGAGYVGGPTMAVIALKAPRIKVTVVDLSEKQIAAWNSSSLPIYEPGLQEIVEQVRGKNLFFSTDIDTGIREADIIFVSVNTPTKTTGIGAGRAANIKNCELCARKIAEVATEDKIVVEKSTVPVRTAESMKRVLAAAS--HYKFQVLSNPEFLAEGTAINDLLFPSRVLIGGEQTPDGLRAIETLVSVYANWVPR 739
            KICC+GAGYVGGPT +VIA   P I+VTVVD++E +I AWNS +LPIYEPGL+E+VE  RGKNLFFST+ID  I+EAD++F+SVNTPTKT G+G GRAA++K  E CAR+I + +   KIV EKSTVPVR AES++R+  A +  +   QVLSNPEFLAEGTAI DL  P RVLIGG++TP+G RA++ L +VY +WVPR
Sbjct:    6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPR 205          
BLAST of CX301576 vs. ExPASy Swiss-Prot
Match: UGDH_PONAB (UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGDH PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 7.447e-69
Identity = 128/200 (64.00%), Postives = 160/200 (80.00%), Query Frame = 2
Query:  146 KICCMGAGYVGGPTMAVIALKAPRIKVTVVDLSEKQIAAWNSSSLPIYEPGLQEIVEQVRGKNLFFSTDIDTGIREADIIFVSVNTPTKTTGIGAGRAANIKNCELCARKIAEVATEDKIVVEKSTVPVRTAESMKRVLAAAS--HYKFQVLSNPEFLAEGTAINDLLFPSRVLIGGEQTPDGLRAIETLVSVYANWVPR 739
            KICC+GAGYVGGPT +VIA   P I+VTVVD++E +I AWNS +LPIYEPGL+E+VE  RGKNLFFST+ID  I+EAD++F+SVNTPTKT G+G GRAA++K  E CAR+I + +   KIV EKSTVPVR AES++R+  A +  +   QVLSNPEFLAEGTAI DL  P RVLIGG++TP+G RA++ L +VY +WVPR
Sbjct:    6 KICCIGAGYVGGPTCSVIAHMRPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPR 205          
BLAST of CX301576 vs. ExPASy Swiss-Prot
Match: UGDH_BOVIN (UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH PE=1 SV=2)

HSP 1 Score: 260.381 bits (664), Expect = 7.447e-69
Identity = 128/200 (64.00%), Postives = 160/200 (80.00%), Query Frame = 2
Query:  146 KICCMGAGYVGGPTMAVIALKAPRIKVTVVDLSEKQIAAWNSSSLPIYEPGLQEIVEQVRGKNLFFSTDIDTGIREADIIFVSVNTPTKTTGIGAGRAANIKNCELCARKIAEVATEDKIVVEKSTVPVRTAESMKRVLAAAS--HYKFQVLSNPEFLAEGTAINDLLFPSRVLIGGEQTPDGLRAIETLVSVYANWVPR 739
            KICC+GAGYVGGPT +VIA   P I+VTVVD++E +I AWNS +LPIYEPGL+E+VE  RGKNLFFST+ID  I+EAD++F+SVNTPTKT G+G GRAA++K  E CAR+I + +   KIV EKSTVPVR AES++R+  A +  +   QVLSNPEFLAEGTAI DL  P RVLIGG++TP+G RA++ L +VY +WVPR
Sbjct:    6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDINESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSHGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPR 205          
BLAST of CX301576 vs. ExPASy Swiss-Prot
Match: UGDH_MOUSE (UDP-glucose 6-dehydrogenase OS=Mus musculus GN=Ugdh PE=1 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.830e-68
Identity = 127/200 (63.50%), Postives = 159/200 (79.50%), Query Frame = 2
Query:  146 KICCMGAGYVGGPTMAVIALKAPRIKVTVVDLSEKQIAAWNSSSLPIYEPGLQEIVEQVRGKNLFFSTDIDTGIREADIIFVSVNTPTKTTGIGAGRAANIKNCELCARKIAEVATEDKIVVEKSTVPVRTAESMKRVLAAAS--HYKFQVLSNPEFLAEGTAINDLLFPSRVLIGGEQTPDGLRAIETLVSVYANWVPR 739
            KICC+GAGYVGGPT +VIA   P I+VTVVD++E +I AWNS +LPIYEPGL+E+VE  RGKNLFFST+ID  IREAD++F+SVNTPTKT G+G GRAA++K  E CAR+I + +   KIV EKSTVPVR AES++R+  A +  +   QVLSNPEFLAEGTAI DL  P RVLIGG++TP+G +A+  L +VY +WVP+
Sbjct:    6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNEARINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIREADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQKAVRALCAVYEHWVPK 205          
BLAST of CX301576 vs. ExPASy Swiss-Prot
Match: UGDH_CHICK (UDP-glucose 6-dehydrogenase OS=Gallus gallus GN=UGDH PE=2 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.396e-67
Identity = 125/200 (62.50%), Postives = 158/200 (79.00%), Query Frame = 2
Query:  146 KICCMGAGYVGGPTMAVIALKAPRIKVTVVDLSEKQIAAWNSSSLPIYEPGLQEIVEQVRGKNLFFSTDIDTGIREADIIFVSVNTPTKTTGIGAGRAANIKNCELCARKIAEVATEDKIVVEKSTVPVRTAESMKRVLAAAS--HYKFQVLSNPEFLAEGTAINDLLFPSRVLIGGEQTPDGLRAIETLVSVYANWVPR 739
            KICC+GAGYVGGPT +VIA   P+I+VTVVD++E +I AWNS +LPIYEPGL+E+VE  RG+NLFFST ID  IREAD++F+SVNTPTKT G+G GRAA++K  E CAR+I + +   KIV EKSTVPVR AES++R+  A +  +   QVLSNPEFLAEGTAI DL  P RVLIGG+ +P+G +A+  L +VY +WVP+
Sbjct:    6 KICCIGAGYVGGPTCSVIAQMCPKIQVTVVDVNEARINAWNSDTLPIYEPGLKEVVESCRGRNLFFSTSIDDAIREADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLDLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDDSPEGQKAVRALCAVYEHWVPK 205          
BLAST of CX301576 vs. ExPASy Swiss-Prot
Match: UGDH_DROME (UDP-glucose 6-dehydrogenase OS=Drosophila melanogaster GN=sgl PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 3.129e-67
Identity = 126/201 (62.69%), Postives = 157/201 (78.11%), Query Frame = 2
Query:  143 LKICCMGAGYVGGPTMAVIALKAPRIKVTVVDLSEKQIAAWNSSSLPIYEPGLQEIVEQVRGKNLFFSTDIDTGIREADIIFVSVNTPTKTTGIGAGRAANIKNCELCARKIAEVATEDKIVVEKSTVPVRTAESMKRVLAAASH--YKFQVLSNPEFLAEGTAINDLLFPSRVLIGGEQTPDGLRAIETLVSVYANWVPR 739
            +K+CC+GAGYVGGPT AV+ALK P I +T+VD S ++IA WNS  LPIYEPGL E+V++ R  NLFFSTDI+T I+EAD+IF+SVNTPTKT G G GRAA++K  E  AR IAE+A  +KIVVEKSTVPVR AES+  +L A       + +LSNPEFLAEGTAINDLL   RVLIGGE+TP+G +A+E L  +Y +W+P+
Sbjct:    1 MKVCCIGAGYVGGPTCAVMALKCPDIVITLVDKSSERIAQWNSDKLPIYEPGLDEVVKKCRNVNLFFSTDIETAIKEADLIFISVNTPTKTCGNGKGRAADLKYVESAARMIAEIAQSNKIVVEKSTVPVRAAESIMHILRANQKPGIHYDILSNPEFLAEGTAINDLLNADRVLIGGEETPEGHQAVEKLSWIYEHWIPK 201          
The following BLAST results are available for this feature:
BLAST of CX301576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
UGDH2_ARATH1.713e-7368.34Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidop... [more]
UGDH1_ARATH1.450e-7266.33Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidop... [more]
UGDH_SOYBN5.510e-7267.34UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV... [more]
UGDH_RAT5.702e-6964.00UDP-glucose 6-dehydrogenase OS=Rattus norvegicus G... [more]
UGDH_HUMAN5.702e-6964.00UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGD... [more]
UGDH_PONAB7.447e-6964.00UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGD... [more]
UGDH_BOVIN7.447e-6964.00UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH ... [more]
UGDH_MOUSE2.830e-6863.50UDP-glucose 6-dehydrogenase OS=Mus musculus GN=Ugd... [more]
UGDH_CHICK2.396e-6762.50UDP-glucose 6-dehydrogenase OS=Gallus gallus GN=UG... [more]
UGDH_DROME3.129e-6762.69UDP-glucose 6-dehydrogenase OS=Drosophila melanoga... [more]

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Properties
Property NameValue
Genbank descriptionC08011C06SK PhyRootSw1 Citrus sinensis cDNA clone C08011C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301576 ID=CX301576; Name=CX301576; organism=Citrus sinensis; type=EST; length=740bp
GAATTCGGCACGAGGCCAGAGCTTCTCACAAGCAATTTATATCACACAAT
ATCATCTCACAACCTCAGAGAAACACTTTCACCTCTCGTCTTCTATTTGA
ATTAAATAACCTTGAAAAGAAAAAATGTCACAAGAATGGGATTTAAAGAT
TTGCTGTATGGGTGCTGGTTATGTTGGTGGTCCAACCATGGCCGTTATTG
CATTAAAAGCACCAAGAATTAAAGTCACTGTTGTCGATCTCTCAGAAAAA
CAGATCGCTGCATGGAATTCCTCTTCCCTACCAATTTATGAACCAGGATT
ACAAGAAATTGTTGAACAAGTACGTGGTAAAAATTTATTTTTTTCCACAG
ATATTGATACTGGTATACGTGAAGCTGATATCATCTTCGTAAGTGTCAAT
ACCCCAACAAAGACCACTGGTATTGGTGCAGGACGTGCTGCGAATATTAA
AAATTGTGAATTATGTGCTAGAAAAATTGCTGAAGTTGCTACAGAAGATA
AAATTGTGGTTGAAAAGTCAACTGTCCCTGTACGTACAGCAGAATCCATG
AAACGTGTTCTTGCTGCTGCATCACATTATAAATTTCAAGTGTTAAGTAA
TCCAGAATTTTTAGCGGAAGGTACAGCTATCAATGATTTATTATTCCCAT
CACGCGTATTAATTGGTGGTGAACAAACGCCTGATGGTTTACGTGCCATT
GAAACTTTAGTCAGTGTTTATGCTAATTGGGTGCCACGTG
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