CX301575

Overview
NameCX301575
Unique NameCX301575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length483
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301575 vs. ExPASy Swiss-Prot
Match: RCE1_ARATH (NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thaliana GN=RCE1 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.858e-27
Identity = 55/62 (88.71%), Postives = 59/62 (95.16%), Query Frame = -2
Query:  285 PVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQTFFIRCI 470
            PVLNINT+IYGLFHLFT+PN EDPLNH+AAAVLRDNPKLFE+NVRRAM GGYVGQTFF RCI
Sbjct:  123 PVLNINTVIYGLFHLFTEPNSEDPLNHDAAAVLRDNPKLFETNVRRAMTGGYVGQTFFPRCI 184          
BLAST of CX301575 vs. ExPASy Swiss-Prot
Match: UB12L_ARATH (Probable NEDD8-conjugating enzyme Ubc12-like OS=Arabidopsis thaliana GN=RCE2 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.481e-25
Identity = 53/62 (85.48%), Postives = 56/62 (90.32%), Query Frame = -2
Query:  285 PVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQTFFIRCI 470
            PVLNINT+IYGLFHLFT+PNYEDPLNHEAAAVLRDNPK FE NVRRAM GG VGQT F RC+
Sbjct:  124 PVLNINTVIYGLFHLFTEPNYEDPLNHEAAAVLRDNPKTFEYNVRRAMMGGQVGQTSFPRCM 185          
BLAST of CX301575 vs. ExPASy Swiss-Prot
Match: UBC12_XENTR (NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropicalis GN=ube2m PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.046e-17
Identity = 40/62 (64.52%), Postives = 51/62 (82.26%), Query Frame = -2
Query:  285 PVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQTFFIRCI 470
            PVL IN+IIYGL +LF +PN EDPLN EAA VL++N +LFE NV+R+M GGY+G T+F RC+
Sbjct:  121 PVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFERCL 182          
BLAST of CX301575 vs. ExPASy Swiss-Prot
Match: UBC12_XENLA (NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis GN=ube2m PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.046e-17
Identity = 40/62 (64.52%), Postives = 51/62 (82.26%), Query Frame = -2
Query:  285 PVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQTFFIRCI 470
            PVL IN+IIYGL +LF +PN EDPLN EAA VL++N +LFE NV+R+M GGY+G T+F RC+
Sbjct:  121 PVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFERCL 182          
BLAST of CX301575 vs. ExPASy Swiss-Prot
Match: UBC12_MOUSE (NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=Ube2m PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.046e-17
Identity = 40/62 (64.52%), Postives = 51/62 (82.26%), Query Frame = -2
Query:  285 PVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQTFFIRCI 470
            PVL IN+IIYGL +LF +PN EDPLN EAA VL++N +LFE NV+R+M GGY+G T+F RC+
Sbjct:  121 PVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFERCL 182          
BLAST of CX301575 vs. ExPASy Swiss-Prot
Match: UBC12_HUMAN (NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=UBE2M PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.046e-17
Identity = 40/62 (64.52%), Postives = 51/62 (82.26%), Query Frame = -2
Query:  285 PVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQTFFIRCI 470
            PVL IN+IIYGL +LF +PN EDPLN EAA VL++N +LFE NV+R+M GGY+G T+F RC+
Sbjct:  121 PVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFERCL 182          
BLAST of CX301575 vs. ExPASy Swiss-Prot
Match: UBC12_BOVIN (NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UBE2M PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.046e-17
Identity = 40/62 (64.52%), Postives = 51/62 (82.26%), Query Frame = -2
Query:  285 PVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQTFFIRCI 470
            PVL IN+IIYGL +LF +PN EDPLN EAA VL++N +LFE NV+R+M GGY+G T+F RC+
Sbjct:  121 PVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFERCL 182          
BLAST of CX301575 vs. ExPASy Swiss-Prot
Match: UBC12_DROME (NEDD8-conjugating enzyme Ubc12 OS=Drosophila melanogaster GN=CG7375 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.266e-15
Identity = 38/62 (61.29%), Postives = 49/62 (79.03%), Query Frame = -2
Query:  285 PVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQTFFIRCI 470
            PVLNIN+I+YGL  LF +PN EDPLN EAA VL+ N + FE+NV++AM GG VG+T+F  C+
Sbjct:  118 PVLNINSIVYGLQFLFLEPNPEDPLNKEAADVLQTNRRQFENNVKKAMRGGCVGETYFECCL 179          
BLAST of CX301575 vs. ExPASy Swiss-Prot
Match: UBC12_DICDI (NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium discoideum GN=ube2m PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.414e-12
Identity = 31/58 (53.45%), Postives = 43/58 (74.14%), Query Frame = -2
Query:  297 PVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQTFF 470
            PVLNI T+I+GL  LF +PN +DPLN +AA ++ DN K FE+NVR+++ GGY+    F
Sbjct:  169 PVLNIGTVIFGLMTLFLEPNPDDPLNKDAAQLMIDNKKTFEANVRQSLRGGYISNRQF 226          
The following BLAST results are available for this feature:
BLAST of CX301575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
RCE1_ARATH4.858e-2788.71NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thal... [more]
UB12L_ARATH3.481e-2585.48Probable NEDD8-conjugating enzyme Ubc12-like OS=Ar... [more]
UBC12_XENTR2.046e-1764.52NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropical... [more]
UBC12_XENLA2.046e-1764.52NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis G... [more]
UBC12_MOUSE2.046e-1764.52NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=... [more]
UBC12_HUMAN2.046e-1764.52NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=... [more]
UBC12_BOVIN2.046e-1764.52NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UB... [more]
UBC12_DROME3.266e-1561.29NEDD8-conjugating enzyme Ubc12 OS=Drosophila melan... [more]
UBC12_DICDI4.414e-1253.45NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium di... [more]
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Properties
Property NameValue
Genbank descriptionC08011C05SK PhyRootSw1 Citrus sinensis cDNA clone C08011C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301575 ID=CX301575; Name=CX301575; organism=Citrus sinensis; type=EST; length=483bp
CGAATTCGGCACGAGGTTTTTTTTTTTTTTTTTTTTTTCTTCAAAGTTGC
AGGCTTGCAGCATACCCCAATCGATTCACTTGAAAATAAGGGAAATAATT
TTGTTCTCAGCCAATATCACAAACACACAACAAAGTTACAGCAGCATACA
AACATTCTGACTCCCTTTGCATGATTCTTAGAATTTTTTGTCCCAACACA
TTACTAGAAATTGAAGCAGCCCTGCGACCAAATTTACAGCTCCTTACCTT
CAAAGCAACATGCATTTCCAGGCAAAAGCAATTATATGCACCGAATGAAG
AAGGTTTGCCCCACATATCCACCAGCCATTGCTCTTCTAACATTGGATTC
AAACAGTTTTGGGTTATCCCTTAAAACAGCTGCTGCTTCATGATTGAGGG
GATCCTCATAATTGGGTTGCGTGAAAAGATGGAAGAGTCCATAAATGATG
GTGTTTATATTCAGAACCGGGGGGGGGCCCGGT
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