CX301574

Overview
NameCX301574
Unique NameCX301574
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301574 vs. ExPASy Swiss-Prot
Match: AHP5_ARATH (Histidine-containing phosphotransfer protein 5 OS=Arabidopsis thaliana GN=AHP5 PE=1 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.993e-37
Identity = 77/111 (69.37%), Postives = 94/111 (84.68%), Query Frame = 1
Query:  124 VVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQP-CVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 453
            VV+QLQ+QF D+  SLY++G++D+QFS+L KLQDE +PDFV EV SLFFDD  KLIN+M+ +LE+P  VDFKQVDS VHQLKGSSSS+GA RVKNVCI+F+  CD QNREG
Sbjct:    5 VVAQLQRQFQDYIVSLYQQGFLDNQFSELRKLQDEGTPDFVAEVVSLFFDDCSKLINTMSISLERPDNVDFKQVDSGVHQLKGSSSSVGARRVKNVCISFKECCDVQNREG 115          
BLAST of CX301574 vs. ExPASy Swiss-Prot
Match: AHP3_ARATH (Histidine-containing phosphotransfer protein 3 OS=Arabidopsis thaliana GN=AHP3 PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.746e-33
Identity = 69/111 (62.16%), Postives = 90/111 (81.08%), Query Frame = 1
Query:  124 VVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQP-CVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 453
            +++QLQ++F DF+ SLY +G++DDQF++L KLQDE SPDFV EV +LFF+D EKLI++MARAL+Q   VDFK V S VHQLKGSSSS+GA RVK +C+  +  CD+QN EG
Sbjct:    4 LIAQLQRRFCDFTISLYHQGFLDDQFTELKKLQDECSPDFVAEVVTLFFEDCEKLISNMARALDQTGNVDFKLVGSSVHQLKGSSSSVGAKRVKGLCVTLKECCDSQNYEG 114          
BLAST of CX301574 vs. ExPASy Swiss-Prot
Match: AHP2_ARATH (Histidine-containing phosphotransfer protein 2 OS=Arabidopsis thaliana GN=AHP2 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.300e-32
Identity = 66/111 (59.46%), Postives = 91/111 (81.98%), Query Frame = 1
Query:  124 VVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQP-CVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 453
            +++QLQ+QF D++ SLY++G++DDQF++L KLQD+ SPDFV EV SLFF+D  KLI++MARAL+    VDF QV + VHQLKGSSSS+GA RVK +C++F+  C+A+N EG
Sbjct:    4 LIAQLQRQFRDYTISLYQQGFLDDQFTELKKLQDDGSPDFVSEVLSLFFEDCVKLISNMARALDTTGTVDFSQVGASVHQLKGSSSSVGAKRVKTLCVSFKECCEAKNYEG 114          
BLAST of CX301574 vs. ExPASy Swiss-Prot
Match: AHP1_ARATH (Histidine-containing phosphotransfer protein 1 OS=Arabidopsis thaliana GN=AHP1 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.335e-32
Identity = 66/111 (59.46%), Postives = 87/111 (78.38%), Query Frame = 1
Query:  118 MDVVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNRE 450
            MD+V Q QK   D++ SL+ EG +D QF QL +LQDES+PDFV +V +LFF D+++++N ++ +L+Q  VDFK+VD HVHQLKGSSSSIGA RVKN C+ FRSFC+ QN E
Sbjct:    1 MDLV-QKQKSLQDYTKSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILNDLSLSLDQQVVDFKKVDPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVE 110          
BLAST of CX301574 vs. ExPASy Swiss-Prot
Match: HP1_ORYSJ (Histidine-containing phosphotransfer protein 1 OS=Oryza sativa subsp. japonica GN=HP1 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.700e-26
Identity = 62/122 (50.82%), Postives = 87/122 (71.31%), Query Frame = 1
Query:  136 LQKQFIDFSSSLYREGYVDDQFSQLHKLQDES-SPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG*VLAKALV---FLDL 489
            L+ Q     SS++ +G VD+QF QL  LQDE  +P FV EV +LF DDA+++IN +A  LEQP V+F +VD++VHQLKGSS+S+GA +VK  C+ FR FC  ++R+G ++A A+V   F DL
Sbjct:    6 LRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFYDL 127          
BLAST of CX301574 vs. ExPASy Swiss-Prot
Match: AHP4_ARATH (Histidine-containing phosphotransfer protein 4 OS=Arabidopsis thaliana GN=AHP4 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 3.089e-22
Identity = 47/92 (51.09%), Postives = 72/92 (78.26%), Query Frame = 1
Query:  178 EGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 453
            +GY+D+QF +L +LQD+++P+FV EV++L+F D+ +LIN++ +ALE+   DF ++DS++HQ KGSS+SIGA +VK  C  FR +C A N EG
Sbjct:    9 QGYLDEQFMELEELQDDANPNFVEEVSALYFKDSARLINNIDQALERGSFDFNRLDSYMHQFKGSSTSIGASKVKAECTTFREYCRAGNAEG 100          
BLAST of CX301574 vs. ExPASy Swiss-Prot
Match: AHP6_ARATH (Histidine-containing phosphotransfer protein 6 OS=Arabidopsis thaliana GN=AHP6 PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 8.988e-22
Identity = 51/110 (46.36%), Postives = 79/110 (71.82%), Query Frame = 1
Query:  127 VSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARAL-EQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 453
            V +LQ       +SL+ +G +D+QF QL +LQDE+SP+FV +V +++FD++EKL+ ++   L ++   D+K++  H++QL GSSSSIGA RV+NVC+AFRS  +  NR G
Sbjct:    6 VDRLQADINRLLASLFHQGVLDEQFLQLQQLQDETSPNFVYDVINIYFDESEKLLRNLRLLLMDREFSDYKKIGLHLNQLVGSSSSIGARRVRNVCVAFRSASELSNRPG 115          
The following BLAST results are available for this feature:
BLAST of CX301574 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
AHP5_ARATH1.993e-3769.37Histidine-containing phosphotransfer protein 5 OS=... [more]
AHP3_ARATH1.746e-3362.16Histidine-containing phosphotransfer protein 3 OS=... [more]
AHP2_ARATH4.300e-3259.46Histidine-containing phosphotransfer protein 2 OS=... [more]
AHP1_ARATH7.335e-3259.46Histidine-containing phosphotransfer protein 1 OS=... [more]
HP1_ORYSJ2.700e-2650.82Histidine-containing phosphotransfer protein 1 OS=... [more]
AHP4_ARATH3.089e-2251.09Histidine-containing phosphotransfer protein 4 OS=... [more]
AHP6_ARATH8.988e-2246.36Histidine-containing phosphotransfer protein 6 OS=... [more]
back to top
Properties
Property NameValue
Genbank descriptionC08011C04SK PhyRootSw1 Citrus sinensis cDNA clone C08011C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301574 ID=CX301574; Name=CX301574; organism=Citrus sinensis; type=EST; length=743bp
AATTCGGCACGAGGAAATGATATATGCACTCCAGAAGATCTGATCTTTTC
TCAAAATCGCATCGGATCGTTTTTGAGAAACGAAGGAAAGAGAGAGGCAT
CACGCATAGCAAAAACCATGGATGTCGTCAGTCAGTTGCAGAAGCAGTTT
ATTGATTTCAGTTCATCTCTTTACCGCGAGGGATATGTGGATGATCAGTT
CAGCCAGTTGCACAAACTGCAAGATGAGAGCAGCCCAGACTTTGTAGTAG
AGGTTGCGTCTCTCTTCTTTGACGACGCTGAGAAGCTTATTAACAGTATG
GCCAGAGCTTTAGAACAACCGTGTGTGGATTTCAAACAGGTAGATTCACA
TGTCCATCAATTGAAGGGTAGTAGTTCCAGCATTGGTGCACTGAGAGTTA
AAAATGTATGCATTGCCTTCAGAAGTTTTTGTGATGCCCAAAACCGTGAA
GGGTGAGTTCTTGCAAAAGCACTTGTATTCCTTGATTTGTTATTTACCTG
TTGTGATTTGCAATTCATACAATTCATCCGATTTACCCTTGAAGTTTTAT
TTGTCAAAATACATTTTGACACTGCATTGGTTGGTTTAAATGATGGCAGA
GTTATGTGTCTGAAGTCCAAAAAGTTCAATAATGCTAACATTGTGATTTT
TTAAATTCTATGNTATCAACATGCTTCTGTGGTTTATTAAGCGAACATTA
AGTTGTTTTAAGTTTTACATATGAGGGTGTGGTTCTTTACTTT
back to top