CX301570

Overview
NameCX301570
Unique NameCX301570
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301570 vs. ExPASy Swiss-Prot
Match: COG6_HUMAN (Conserved oligomeric Golgi complex subunit 6 OS=Homo sapiens GN=COG6 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 6.550e-25
Identity = 57/151 (37.75%), Postives = 95/151 (62.91%), Query Frame = 2
Query:   71 DSDLTFVLDRIFEGVCRPFKVRVEQVLQSQPSLIISYKLSNTLEFYSYTISDLLGRE-TALCNTLWVLKEAAQKTYFDILKSRGEKLLRYPPLVAADLSPPTAVRDGVSVLLEIIETHNSTMVPVSRETPDFNLVISALLDPIIQMCEQAA 520
            + ++  V+  I EGVCRP KVR+EQV+ ++P  ++ YK+SN L+FY +TIS ++G   TAL  T+  +   ++K +F+ L     KL+    L   DL P +A+   + +L E++ +H+S++VP+     DF  V+S +LDP++QMC  +A
Sbjct:  339 EENIQEVVGHITEGVCRPLKVRIEQVIVAEPGAVLLYKISNLLKFYHHTISGIVGNSATALLTTIEEMHLLSKKIFFNSLSLHASKLMDKVELPPPDLGPSSALNQTLMLLREVLASHDSSVVPLDARQADFVQVLSCVLDPLLQMCTVSA 489          
BLAST of CX301570 vs. ExPASy Swiss-Prot
Match: COG6_BOVIN (Conserved oligomeric Golgi complex subunit 6 OS=Bos taurus GN=COG6 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.906e-24
Identity = 56/151 (37.09%), Postives = 94/151 (62.25%), Query Frame = 2
Query:   71 DSDLTFVLDRIFEGVCRPFKVRVEQVLQSQPSLIISYKLSNTLEFYSYTISDLLGRE-TALCNTLWVLKEAAQKTYFDILKSRGEKLLRYPPLVAADLSPPTAVRDGVSVLLEIIETHNSTMVPVSRETPDFNLVISALLDPIIQMCEQAA 520
            + ++  V+  I EGVCRP KVR+EQV+ ++P  ++ YK+SN L+FY +TIS ++G   T L  T+  +   ++K +F+ L     KL+    L   DL P +A+   + +L E++ +H+S++VP+     DF  V+S +LDP++QMC  +A
Sbjct:  339 EENIQEVVGHITEGVCRPLKVRIEQVIVAEPGAVLLYKISNLLKFYHHTISGIIGNSATTLLTTIEEMHLLSKKIFFNSLSLHASKLMDKVELPPPDLGPSSALNQTLVLLREVLASHDSSVVPLDARQADFVQVLSCVLDPLLQMCTVSA 489          
BLAST of CX301570 vs. ExPASy Swiss-Prot
Match: COG6_RAT (Conserved oligomeric Golgi complex subunit 6 OS=Rattus norvegicus GN=Cog6 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.458e-24
Identity = 55/145 (37.93%), Postives = 91/145 (62.76%), Query Frame = 2
Query:   89 VLDRIFEGVCRPFKVRVEQVLQSQPSLIISYKLSNTLEFYSYTISDLLGRETA-LCNTLWVLKEAAQKTYFDILKSRGEKLLRYPPLVAADLSPPTAVRDGVSVLLEIIETHNSTMVPVSRETPDFNLVISALLDPIIQMCEQAA 520
            V+  I EGVCRP KVR+EQV+ ++P  ++ YK+SN L+FY +TIS ++G   A L  T+  +   ++K +F  L     KL+    L   DL P +A+   +++L +++ +H+S++VP+     DF  V+S +LDP++QMC  +A
Sbjct:  345 VVGHITEGVCRPLKVRIEQVILAEPGAVLLYKISNLLKFYHHTISGIVGNSAATLLTTIEEMHLLSKKIFFSSLSLHANKLMDKIELPPPDLGPSSALSQTLTLLRDVLASHDSSVVPLDARQADFVQVLSCVLDPLLQMCTVSA 489          
BLAST of CX301570 vs. ExPASy Swiss-Prot
Match: COG6_MOUSE (Conserved oligomeric Golgi complex subunit 6 OS=Mus musculus GN=Cog6 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.235e-23
Identity = 56/145 (38.62%), Postives = 90/145 (62.07%), Query Frame = 2
Query:   89 VLDRIFEGVCRPFKVRVEQVLQSQPSLIISYKLSNTLEFYSYTISDLLGRETA-LCNTLWVLKEAAQKTYFDILKSRGEKLLRYPPLVAADLSPPTAVRDGVSVLLEIIETHNSTMVPVSRETPDFNLVISALLDPIIQMCEQAA 520
            V+  I EGVCRP KVR+EQV+ ++P  ++ YK+SN L+FY +TIS ++G   A L  T+  +   ++K +F  L     KL+    L   DL P +A+   +++L +I+ +H+S++VP+     DF  V+S  LDP++QMC  +A
Sbjct:  345 VVGHITEGVCRPLKVRIEQVILAEPGAVLLYKISNLLKFYHHTISGIVGNSAATLLTTIEEMHLLSKKIFFTSLSLHANKLMDKVELPPPDLGPSSALSQTLTLLRDILASHDSSVVPLDARQADFVQVLSCALDPLLQMCTVSA 489          
BLAST of CX301570 vs. ExPASy Swiss-Prot
Match: COG6_CRYNE (Conserved oligomeric Golgi complex subunit 6 OS=Cryptococcus neoformans GN=COG6 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.278e-20
Identity = 50/164 (30.49%), Postives = 96/164 (58.54%), Query Frame = 2
Query:   62 GKTDSDLTFVLDRIFEGVCRPFKVRVEQVLQSQPSLIISYKLSNTLEFYSYTISDLLGRETALCNTLWVLKEAAQKTYFDILKSRGEKLLRYPPLVAADLSPPTAVRDGVSVLLEIIETHNSTMV-PVSRET-PDFNLVISALLDPIIQMCEQAAEAHKSKGAG 547
            G+ +   + VLD+  EG+ RP K+R+++ ++SQ  +I++YK++N L FY  T+   +G +  L  TL  + + A   +++ L ++G  LLR+     A L+PP  +RD   +L E++  ++++++ P  RE+  D   ++   + P ++MCE+ AE  + K  G
Sbjct:  364 GEEERMASEVLDKDLEGLSRPLKLRIQETIKSQEGIIMTYKIANLLHFYLVTMRKTIGGKAMLVQTLQEIHDQAYIAFYETLDAQGRGLLRFLHPPDATLTPPITLRDAAQILRELLFVYSTSLIDPAERESDADLAKLLDKAVGPCVEMCERMAEMRRGKSGG 527          
BLAST of CX301570 vs. ExPASy Swiss-Prot
Match: COG6_DICDI (Conserved oligomeric Golgi complex subunit 6 OS=Dictyostelium discoideum GN=cog6 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.910e-16
Identity = 48/173 (27.75%), Postives = 96/173 (55.49%), Query Frame = 2
Query:   44 KSQNGSGKTDSDLTF------VLDRIFEGVCRPFKVRVEQVLQSQPSLIISYKLSNTLEFYSYTISDLLGRETALCNTLWV---LKEAAQKTYFDILKSRGEKLLRYPPLVA-ADLSPPTAVRDGVSVLLEIIETHNSTMVPVSRETPDFNLVISALLDPIIQMCEQAAEAHK 532
            ++ N +   + +L F      VL+  FE + RP  +R++Q+LQS+P +II+YK+ + L+FYS  +++L+ + + +C    +   +K      +F  +K   ++L R P + +  DL P   ++D ++ L E+I T NS+++P+     ++  V S+ +  II +   +A + K
Sbjct:  334 ENNNNNNNNNEELNFIEPIIKVLNNSFECINRPLSIRIDQILQSKPGVIITYKMISLLDFYS-RMANLITKGSGVCRVSTIFGSIKSNCLSVFFTQIKDNFDRLERSPTVPSPQDLLPTNDIKDSINKLSELISTFNSSLIPLDEREKEYTPVFSSFIQKIINLTTFSATSSK 505          
BLAST of CX301570 vs. ExPASy Swiss-Prot
Match: COG6_SCLS1 (Conserved oligomeric Golgi complex subunit 6 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=COG6 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.751e-13
Identity = 43/166 (25.90%), Postives = 86/166 (51.81%), Query Frame = 2
Query:   32 SQFSKSQNGSGKTDS--DLTFVLDRIFEGVCRPFKVRVEQVLQSQPSLIISYKLSNTLEFYSYTISDLLGRETALCNTLWVLKEAAQKTYFDILKSRGEKLLRYPPLVAADLSPPTAVRDGVSVLLEIIETHNSTMVPVSRETPDFNLVISALLDPIIQMCEQAAE 523
            ++ ++S++  G  D    L  ++DR   GV R  + ++ QV+QS    I++YK++N L FY  T   LLG ++ L ++L  L+E+A + +  +++     L     +   +LSPP  + +G+  L  I++T+ ++          F  +++   DP ++  E  A+
Sbjct:  316 NRIAESEDEVGHFDGLKALNELVDRDVAGVARVLRQKIGQVIQSHEETIMAYKIANLLNFYRGTFQRLLGDDSVLLDSLATLEESALRQFRALMRDHITSLQAETQVAPPNLSPPDFLHEGLKQLTAIMKTYETSFTSPETREAGFEPILTEAFDPFMKGSENVAK 481          
BLAST of CX301570 vs. ExPASy Swiss-Prot
Match: COG6_CHAGB (Conserved oligomeric Golgi complex subunit 6 OS=Chaetomium globosum GN=COG6 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.417e-11
Identity = 43/140 (30.71%), Postives = 68/140 (48.57%), Query Frame = 2
Query:   80 LTFVLDRIFEGVCRPFKVRVEQVLQSQPSLIISYKLSNTLEFYSYTISDLLGRETALCNTLWVLKEAAQKTYFDILKSRGEKLLRYPPLVAADLSPPTAVRDGVSVLLEIIETHNSTMVPVSRETPDFNLVISALLDPII 499
            L  ++DR   G  R  + RVEQV+Q+    I++YKL+N L FY  T S LL   +AL  TL  L+  A + +  + +     +        ADL PP  +   +  L  I++T+ ++    S    +F  V++   DP I
Sbjct:  363 LNELVDRDLSGAARLLRQRVEQVIQTNEETILAYKLANLLNFYKSTFSRLLSVGSALVETLGALESEALRQFRSLARDHVAAIQGDFQHTPADLRPPEFLLGALEQLAAIMKTYETSFTSSSDREEEFEPVLAEAFDPFI 502          
The following BLAST results are available for this feature:
BLAST of CX301570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
COG6_HUMAN6.550e-2537.75Conserved oligomeric Golgi complex subunit 6 OS=Ho... [more]
COG6_BOVIN1.906e-2437.09Conserved oligomeric Golgi complex subunit 6 OS=Bo... [more]
COG6_RAT9.458e-2437.93Conserved oligomeric Golgi complex subunit 6 OS=Ra... [more]
COG6_MOUSE1.235e-2338.62Conserved oligomeric Golgi complex subunit 6 OS=Mu... [more]
COG6_CRYNE1.278e-2030.49Conserved oligomeric Golgi complex subunit 6 OS=Cr... [more]
COG6_DICDI1.910e-1627.75Conserved oligomeric Golgi complex subunit 6 OS=Di... [more]
COG6_SCLS15.751e-1325.90Conserved oligomeric Golgi complex subunit 6 OS=Sc... [more]
COG6_CHAGB1.417e-1130.71Conserved oligomeric Golgi complex subunit 6 OS=Ch... [more]
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Properties
Property NameValue
Genbank descriptionC08011B12SK PhyRootSw1 Citrus sinensis cDNA clone C08011B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301570 ID=CX301570; Name=CX301570; organism=Citrus sinensis; type=EST; length=737bp
TCCAGATGTAGGAGATACTGGGTTAACTGCCAGCCAATTTTCCAAGAGCC
AGAATGGATCTGGAAAGACTGATTCAGACCTGACATTTGTTCTGGATAGA
ATTTTTGAAGGAGTTTGTCGGCCATTTAAAGTGAGGGTTGAGCAAGTTTT
GCAATCTCAACCCAGTCTTATAATCTCATATAAACTCAGTAATACCCTGG
AGTTTTACAGCTATACCATATCAGATTTACTTGGGAGGGAAACAGCCCTA
TGTAATACTCTTTGGGTGCTGAAGGAAGCTGCTCAAAAAACATATTTTGA
CATTCTGAAAAGTAGAGGAGAAAAGCTTTTACGGTACCCTCCCCTCGTTG
CTGCTGACCTTTCTCCGCCTACAGCTGTGAGGGATGGAGTTTCTGTGCTG
CTTGAAATAATTGAGACCCATAACAGTACAATGGTTCCTGTGTCAAGAGA
AACGCCTGATTTCAATCTGGTTATATCTGCTTTGCTGGATCCTATTATCC
AGATGTGTGAACAAGCAGCAGAAGCACACAAGTCCAAGGGGGCCGGTCAC
TCATCGAGAAGAAGACTGAGTTCTGACTCAGGCAATGTGAGTAAATCATC
AGTCGATGCAATATTGTCGAACAGCAGCTCCACCCCATCCTCGCAGAGTA
ACGAGACCCCTTCTAAGATATTCCTCATCAACTGCTTATGTGCAATCCAA
CACCATTGATTGGGCATGAAGTTGCTGCTGAATATGT
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