CX301570
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX301570 vs. ExPASy Swiss-Prot
Match: COG6_HUMAN (Conserved oligomeric Golgi complex subunit 6 OS=Homo sapiens GN=COG6 PE=2 SV=2) HSP 1 Score: 114.39 bits (285), Expect = 6.550e-25 Identity = 57/151 (37.75%), Postives = 95/151 (62.91%), Query Frame = 2 Query: 71 DSDLTFVLDRIFEGVCRPFKVRVEQVLQSQPSLIISYKLSNTLEFYSYTISDLLGRE-TALCNTLWVLKEAAQKTYFDILKSRGEKLLRYPPLVAADLSPPTAVRDGVSVLLEIIETHNSTMVPVSRETPDFNLVISALLDPIIQMCEQAA 520 + ++ V+ I EGVCRP KVR+EQV+ ++P ++ YK+SN L+FY +TIS ++G TAL T+ + ++K +F+ L KL+ L DL P +A+ + +L E++ +H+S++VP+ DF V+S +LDP++QMC +A Sbjct: 339 EENIQEVVGHITEGVCRPLKVRIEQVIVAEPGAVLLYKISNLLKFYHHTISGIVGNSATALLTTIEEMHLLSKKIFFNSLSLHASKLMDKVELPPPDLGPSSALNQTLMLLREVLASHDSSVVPLDARQADFVQVLSCVLDPLLQMCTVSA 489
BLAST of CX301570 vs. ExPASy Swiss-Prot
Match: COG6_BOVIN (Conserved oligomeric Golgi complex subunit 6 OS=Bos taurus GN=COG6 PE=2 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.906e-24 Identity = 56/151 (37.09%), Postives = 94/151 (62.25%), Query Frame = 2 Query: 71 DSDLTFVLDRIFEGVCRPFKVRVEQVLQSQPSLIISYKLSNTLEFYSYTISDLLGRE-TALCNTLWVLKEAAQKTYFDILKSRGEKLLRYPPLVAADLSPPTAVRDGVSVLLEIIETHNSTMVPVSRETPDFNLVISALLDPIIQMCEQAA 520 + ++ V+ I EGVCRP KVR+EQV+ ++P ++ YK+SN L+FY +TIS ++G T L T+ + ++K +F+ L KL+ L DL P +A+ + +L E++ +H+S++VP+ DF V+S +LDP++QMC +A Sbjct: 339 EENIQEVVGHITEGVCRPLKVRIEQVIVAEPGAVLLYKISNLLKFYHHTISGIIGNSATTLLTTIEEMHLLSKKIFFNSLSLHASKLMDKVELPPPDLGPSSALNQTLVLLREVLASHDSSVVPLDARQADFVQVLSCVLDPLLQMCTVSA 489
BLAST of CX301570 vs. ExPASy Swiss-Prot
Match: COG6_RAT (Conserved oligomeric Golgi complex subunit 6 OS=Rattus norvegicus GN=Cog6 PE=2 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 9.458e-24 Identity = 55/145 (37.93%), Postives = 91/145 (62.76%), Query Frame = 2 Query: 89 VLDRIFEGVCRPFKVRVEQVLQSQPSLIISYKLSNTLEFYSYTISDLLGRETA-LCNTLWVLKEAAQKTYFDILKSRGEKLLRYPPLVAADLSPPTAVRDGVSVLLEIIETHNSTMVPVSRETPDFNLVISALLDPIIQMCEQAA 520 V+ I EGVCRP KVR+EQV+ ++P ++ YK+SN L+FY +TIS ++G A L T+ + ++K +F L KL+ L DL P +A+ +++L +++ +H+S++VP+ DF V+S +LDP++QMC +A Sbjct: 345 VVGHITEGVCRPLKVRIEQVILAEPGAVLLYKISNLLKFYHHTISGIVGNSAATLLTTIEEMHLLSKKIFFSSLSLHANKLMDKIELPPPDLGPSSALSQTLTLLRDVLASHDSSVVPLDARQADFVQVLSCVLDPLLQMCTVSA 489
BLAST of CX301570 vs. ExPASy Swiss-Prot
Match: COG6_MOUSE (Conserved oligomeric Golgi complex subunit 6 OS=Mus musculus GN=Cog6 PE=2 SV=2) HSP 1 Score: 110.153 bits (274), Expect = 1.235e-23 Identity = 56/145 (38.62%), Postives = 90/145 (62.07%), Query Frame = 2 Query: 89 VLDRIFEGVCRPFKVRVEQVLQSQPSLIISYKLSNTLEFYSYTISDLLGRETA-LCNTLWVLKEAAQKTYFDILKSRGEKLLRYPPLVAADLSPPTAVRDGVSVLLEIIETHNSTMVPVSRETPDFNLVISALLDPIIQMCEQAA 520 V+ I EGVCRP KVR+EQV+ ++P ++ YK+SN L+FY +TIS ++G A L T+ + ++K +F L KL+ L DL P +A+ +++L +I+ +H+S++VP+ DF V+S LDP++QMC +A Sbjct: 345 VVGHITEGVCRPLKVRIEQVILAEPGAVLLYKISNLLKFYHHTISGIVGNSAATLLTTIEEMHLLSKKIFFTSLSLHANKLMDKVELPPPDLGPSSALSQTLTLLRDILASHDSSVVPLDARQADFVQVLSCALDPLLQMCTVSA 489
BLAST of CX301570 vs. ExPASy Swiss-Prot
Match: COG6_CRYNE (Conserved oligomeric Golgi complex subunit 6 OS=Cryptococcus neoformans GN=COG6 PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.278e-20 Identity = 50/164 (30.49%), Postives = 96/164 (58.54%), Query Frame = 2 Query: 62 GKTDSDLTFVLDRIFEGVCRPFKVRVEQVLQSQPSLIISYKLSNTLEFYSYTISDLLGRETALCNTLWVLKEAAQKTYFDILKSRGEKLLRYPPLVAADLSPPTAVRDGVSVLLEIIETHNSTMV-PVSRET-PDFNLVISALLDPIIQMCEQAAEAHKSKGAG 547 G+ + + VLD+ EG+ RP K+R+++ ++SQ +I++YK++N L FY T+ +G + L TL + + A +++ L ++G LLR+ A L+PP +RD +L E++ ++++++ P RE+ D ++ + P ++MCE+ AE + K G Sbjct: 364 GEEERMASEVLDKDLEGLSRPLKLRIQETIKSQEGIIMTYKIANLLHFYLVTMRKTIGGKAMLVQTLQEIHDQAYIAFYETLDAQGRGLLRFLHPPDATLTPPITLRDAAQILRELLFVYSTSLIDPAERESDADLAKLLDKAVGPCVEMCERMAEMRRGKSGG 527
BLAST of CX301570 vs. ExPASy Swiss-Prot
Match: COG6_DICDI (Conserved oligomeric Golgi complex subunit 6 OS=Dictyostelium discoideum GN=cog6 PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.910e-16 Identity = 48/173 (27.75%), Postives = 96/173 (55.49%), Query Frame = 2 Query: 44 KSQNGSGKTDSDLTF------VLDRIFEGVCRPFKVRVEQVLQSQPSLIISYKLSNTLEFYSYTISDLLGRETALCNTLWV---LKEAAQKTYFDILKSRGEKLLRYPPLVA-ADLSPPTAVRDGVSVLLEIIETHNSTMVPVSRETPDFNLVISALLDPIIQMCEQAAEAHK 532 ++ N + + +L F VL+ FE + RP +R++Q+LQS+P +II+YK+ + L+FYS +++L+ + + +C + +K +F +K ++L R P + + DL P ++D ++ L E+I T NS+++P+ ++ V S+ + II + +A + K Sbjct: 334 ENNNNNNNNNEELNFIEPIIKVLNNSFECINRPLSIRIDQILQSKPGVIITYKMISLLDFYS-RMANLITKGSGVCRVSTIFGSIKSNCLSVFFTQIKDNFDRLERSPTVPSPQDLLPTNDIKDSINKLSELISTFNSSLIPLDEREKEYTPVFSSFIQKIINLTTFSATSSK 505
BLAST of CX301570 vs. ExPASy Swiss-Prot
Match: COG6_SCLS1 (Conserved oligomeric Golgi complex subunit 6 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=COG6 PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.751e-13 Identity = 43/166 (25.90%), Postives = 86/166 (51.81%), Query Frame = 2 Query: 32 SQFSKSQNGSGKTDS--DLTFVLDRIFEGVCRPFKVRVEQVLQSQPSLIISYKLSNTLEFYSYTISDLLGRETALCNTLWVLKEAAQKTYFDILKSRGEKLLRYPPLVAADLSPPTAVRDGVSVLLEIIETHNSTMVPVSRETPDFNLVISALLDPIIQMCEQAAE 523 ++ ++S++ G D L ++DR GV R + ++ QV+QS I++YK++N L FY T LLG ++ L ++L L+E+A + + +++ L + +LSPP + +G+ L I++T+ ++ F +++ DP ++ E A+ Sbjct: 316 NRIAESEDEVGHFDGLKALNELVDRDVAGVARVLRQKIGQVIQSHEETIMAYKIANLLNFYRGTFQRLLGDDSVLLDSLATLEESALRQFRALMRDHITSLQAETQVAPPNLSPPDFLHEGLKQLTAIMKTYETSFTSPETREAGFEPILTEAFDPFMKGSENVAK 481
BLAST of CX301570 vs. ExPASy Swiss-Prot
Match: COG6_CHAGB (Conserved oligomeric Golgi complex subunit 6 OS=Chaetomium globosum GN=COG6 PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.417e-11 Identity = 43/140 (30.71%), Postives = 68/140 (48.57%), Query Frame = 2 Query: 80 LTFVLDRIFEGVCRPFKVRVEQVLQSQPSLIISYKLSNTLEFYSYTISDLLGRETALCNTLWVLKEAAQKTYFDILKSRGEKLLRYPPLVAADLSPPTAVRDGVSVLLEIIETHNSTMVPVSRETPDFNLVISALLDPII 499 L ++DR G R + RVEQV+Q+ I++YKL+N L FY T S LL +AL TL L+ A + + + + + ADL PP + + L I++T+ ++ S +F V++ DP I Sbjct: 363 LNELVDRDLSGAARLLRQRVEQVIQTNEETILAYKLANLLNFYKSTFSRLLSVGSALVETLGALESEALRQFRSLARDHVAAIQGDFQHTPADLRPPEFLLGALEQLAAIMKTYETSFTSSSDREEEFEPVLAEAFDPFI 502 The following BLAST results are available for this feature:
BLAST of CX301570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX301570 ID=CX301570; Name=CX301570; organism=Citrus sinensis; type=EST; length=737bpback to top |