CX301569

Overview
NameCX301569
Unique NameCX301569
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX301569_ssr585 microsatellite CX301569_ssr585:585..596. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12317 contig Csv1_Contig12317:425..1111. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX301569 vs. ExPASy Swiss-Prot
Match: PTR2_ARATH (Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 4.203e-84
Identity = 149/216 (68.98%), Postives = 186/216 (86.11%), Query Frame = 2
Query:   23 ERPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPLA 670
            ++PGGSPITR+ QV+VASFRK +++VP D+TLLYETQDK SAI GSRKIEH+D+ + LDKAAV+S+ E KSGD+SN W LCTVTQVEELKILIRMFPIWA+GI+FSAVYAQMST+FV+QG  M+  IGSF +PPA+L +FD  SVI WVP+YD+ IVP+ARKFTG ++GF+E+QRMGIGLF+SVLCM+AAA+VEI RL +A +L LV+    VP++
Sbjct:  256 QKPGGSPITRISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGSRKIEHTDDCQYLDKAAVISEEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNCKIGSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVLCMAAAAIVEIIRLHMANDLGLVESGAPVPIS 471          
BLAST of CX301569 vs. ExPASy Swiss-Prot
Match: PTR5_ARATH (Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 6.977e-63
Identity = 119/219 (54.34%), Postives = 163/219 (74.43%), Query Frame = 2
Query:   23 ERPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIG-SFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPLASF 676
            ++PGGSP+TRM QV+VAS RK  +++P D +LLYE QD  S+I GSRK+EH+  L   DKAAV ++++ K    S+ W LCTVTQVEELK LIR+ PIWATGIVF++VY+QM T+FV QG  +D  +G +F IP ASLS FD +SV+FW P+YDK+IVP ARK+TG ERGF++LQR+GIGL +S+  M +A ++E+ RL   +   L ++  ++P+  F
Sbjct:  238 QKPGGSPLTRMLQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRKLEHTKILTFFDKAAVETESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIFSMVSAGILEVARLNYVQTHNLYNEE-TIPMTIF 455          
BLAST of CX301569 vs. ExPASy Swiss-Prot
Match: PTR1_ARATH (Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.554e-62
Identity = 120/211 (56.87%), Postives = 159/211 (75.36%), Query Frame = 2
Query:   23 ERPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLDKAAVVSDAE-IKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIG-SFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQ 649
            +RPGGSP+TR+ QV+VA+FRK +++VP D +LL+ET D  S I+GSRK+ H+D L+  DKAAV S ++ IK G+  NPW LC+VTQVEELK +I + P+WATGIVF+ VY+QMST+FV QG  MD  +G +F IP ASLS FD +SV+FW P+YD+ I+P+ARKFT  ERGF++LQRMGIGL +S+  M  A V+E+ RL   +     DQ
Sbjct:  238 QRPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKAAVESQSDSIKDGEV-NPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQ 447          
BLAST of CX301569 vs. ExPASy Swiss-Prot
Match: CHL1_ARATH (Nitrate/chlorate transporter OS=Arabidopsis thaliana GN=CHL1 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.299e-40
Identity = 83/200 (41.50%), Postives = 128/200 (64.00%), Query Frame = 2
Query:   35 GSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASA---IEGSRKIEHSDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLA 625
            GSP+T++  V+VA++R   LE+P D + LY+  D  +A   ++G +K+ H+++ R LDKAA+       + +  N W L T+T VEE+K ++RM PIWAT I+F  V+AQ++TL V Q   +D SIGSF IPPAS++ F V  ++    +YD++ + + +K      G   LQR+G+GLF   + M+ AA+VE+ RLR A
Sbjct:  249 GSPMTQVAAVIVAAWRNRKLELPADPSYLYDVDDIIAAEGSMKGKQKLPHTEQFRSLDKAAIRDQEAGVTSNVFNKWTLSTLTDVEEVKQIVRMLPIWATCILFWTVHAQLTTLSVAQSETLDRSIGSFEIPPASMAVFYVGGLLLTTAVYDRVAIRLCKKLFNYPHGLRPLQRIGLGLFFGSMAMAVAALVELKRLRTA 448          
BLAST of CX301569 vs. ExPASy Swiss-Prot
Match: PTR3A_ARATH (Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.379e-39
Identity = 94/218 (43.12%), Postives = 135/218 (61.93%), Query Frame = 2
Query:   29 PGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSI-GSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQ-NVSVPLASF 676
            P GSP T+M +V+VASFRK N  + +D T  +E        +G+  I  +  LR LD+A+      +K+G  ++ W LCT T+VEE K ++RM P+     V S + AQ++TLFV+QG  +D  + GSF+IPPASLS F  +S++  + +YD++ V I RKFTG  RG + LQRMGIGL   +L M  A+V E  RL++A +  L+ Q  V +PL  F
Sbjct:  247 PTGSPFTKMARVIVASFRKANAPMTHDITSFHELPSLEYERKGAFPIHPTPSLRFLDRAS------LKTGT-NHKWNLCTTTEVEETKQMLRMLPVLFITFVPSMMLAQINTLFVKQGTTLDRKVTGSFSIPPASLSGFVTLSMLISIVLYDRVFVKITRKFTGNPRGITLLQRMGIGLIFHILIMIVASVTERYRLKVAADHGLIHQTGVKLPLTIF 457          
BLAST of CX301569 vs. ExPASy Swiss-Prot
Match: PTR3B_ARATH (Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.115e-35
Identity = 88/225 (39.11%), Postives = 133/225 (59.11%), Query Frame = 2
Query:    8 RIRHEERPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSI-GSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQN-VSVPLASF 676
            R+   + P GSP T+M +V+VAS RK    + +DST  YE      A + +  I  +  LR L++A+      +K+G  ++ W LCT+T+VEE K +++M P+     V S + AQ+ TLF++QG  +D  +  +F+IPPASL  F   S++  + IYD++ V   RK TG  RG + LQRMGIG+ L +L M  A++ E  RL++A E  L  Q  V +PL+ F
Sbjct:  240 RLYRHKLPMGSPFTKMARVIVASLRKAREPMSSDSTRFYELPPMEYASKRAFPIHSTSSLRFLNRAS------LKTGS-THKWRLCTITEVEETKQMLKMLPVLFVTFVPSMMLAQIMTLFIKQGTTLDRRLTNNFSIPPASLLGFTTFSMLVSIVIYDRVFVKFMRKLTGNPRGITLLQRMGIGMILHILIMIIASITERYRLKVAAEHGLTHQTAVPIPLSIF 457          
BLAST of CX301569 vs. ExPASy Swiss-Prot
Match: PTR2X_ARATH (Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.795e-26
Identity = 74/203 (36.45%), Postives = 117/203 (57.64%), Query Frame = 2
Query:   38 SPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLDKAAVVS--DAEIKSGDFS-NPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIG----SFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLA 625
            S  T + Q +VA+++K  L +P+     +++ D    ++ S     S +LR L+KA ++S  + EI S  F+ NPW LCT  +VEELK LI++ PIW+TGI+ S +    S+  + Q   MD  +     SF +P  S   F +I++  WV +YD+ ++P+A K  G+    S   RMG+GLF+S L M+ +A+VE  R + A
Sbjct:  246 SLFTGLAQAIVAAYKKRKLSLPDH----HDSFDCYYHMKDSEIKAPSQKLRFLNKACLISNREEEIGSDGFALNPWRLCTTDKVEELKALIKVIPIWSTGIMMS-INTSQSSFQLLQATSMDRRLSRHGSSFQVPAGSFGMFTIIALALWVILYDRAVIPLASKIRGRPFRLSVKLRMGLGLFMSFLAMAISAMVESFRRKKA 443          
BLAST of CX301569 vs. ExPASy Swiss-Prot
Match: S15A4_HUMAN (Solute carrier family 15 member 4 OS=Homo sapiens GN=SLC15A4 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 39/130 (30.00%), Postives = 71/130 (54.62%), Query Frame = 2
Query:  266 TVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGM------VMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGF--SELQRMGIGLFLSVLCMSAAAVVEINRLRLARE 631
            T  +VE++K L+++ P++   I +  VY QM T +V Q +      + + +    T+P A L+ FD + ++  +P+ DK++ PI R+      G   S L+R+ +G+F  +    AA ++E  RL L +E
Sbjct:  308 TEEKVEDVKALVKIVPVFLALIPYWTVYFQMQTTYVLQSLHLRIPEISNITTTPHTLPAAWLTMFDAVLILLLIPLKDKLVDPILRR-----HGLLPSSLKRIAVGMFFVMCSAFAAGILESKRLNLVKE 432          
The following BLAST results are available for this feature:
BLAST of CX301569 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PTR2_ARATH4.203e-8468.98Peptide transporter PTR2 OS=Arabidopsis thaliana G... [more]
PTR5_ARATH6.977e-6354.34Peptide transporter PTR5 OS=Arabidopsis thaliana G... [more]
PTR1_ARATH1.554e-6256.87Peptide transporter PTR1 OS=Arabidopsis thaliana G... [more]
CHL1_ARATH8.299e-4041.50Nitrate/chlorate transporter OS=Arabidopsis thalia... [more]
PTR3A_ARATH5.379e-3943.12Peptide transporter PTR3-A OS=Arabidopsis thaliana... [more]
PTR3B_ARATH2.115e-3539.11Peptide transporter PTR3-B OS=Arabidopsis thaliana... [more]
PTR2X_ARATH1.795e-2636.45Probable peptide transporter At1g52190 OS=Arabidop... [more]
S15A4_HUMAN8.094e-1130.00Solute carrier family 15 member 4 OS=Homo sapiens ... [more]
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Properties
Property NameValue
Genbank descriptionC08011B11SK PhyRootSw1 Citrus sinensis cDNA clone C08011B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301569 ID=CX301569; Name=CX301569; organism=Citrus sinensis; type=EST; length=687bp
CTCGTGCCGAATTCGGCACGAGGAAAGGCCAGGGGGAAGCCCCATTACAA
GAATGTGTCAGGTTTTGGTTGCTTCATTCCGTAAATGGAATTTGGAAGTA
CCTAATGACAGTACTCTTCTGTATGAAACTCAAGACAAAGCCTCAGCCAT
TGAAGGTAGCCGGAAGATAGAGCACAGCGATGAACTTAGGTGCCTTGACA
AAGCTGCTGTAGTTTCAGATGCTGAGATCAAAAGTGGTGATTTCTCCAAT
CCTTGGATTCTTTGCACTGTAACTCAGGTGGAGGAACTAAAAATTTTGAT
CCGAATGTTTCCTATCTGGGCTACTGGAATTGTCTTTTCTGCTGTATATG
CCCAAATGTCTACATTGTTTGTGGAACAAGGGATGGTGATGGACACGTCT
ATTGGTTCTTTCACCATTCCTCCTGCCTCTCTCTCAAGTTTTGATGTTAT
CAGTGTTATTTTCTGGGTACCTATATATGATAAGATCATTGTCCCAATAG
CAAGGAAGTTCACAGGCAAGGAGAGGGGTTTCTCAGAGTTGCAGCGAATG
GGAATTGGCCTCTTTCTGTCAGTTCTCTGCATGTCTGCTGCTGCTGTGGT
TGAGATCAATAGATTGCGTCTTGCAAGAGAGCTTGAGCTTGTTGACCAAA
ATGTTTCTGTGCCATTAGCATCTTTTGGCAATACCAC
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