CX043353
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX043353 vs. ExPASy Swiss-Prot
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 5.770e-36 Identity = 83/176 (47.16%), Postives = 120/176 (68.18%), Query Frame = 1 Query: 298 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNK 813 +LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L NG P+P + F+LN+A++G ++ D++P++++FVGDL DV D ML E F YPS +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE G V ++P+R+ A K Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPK 176
BLAST of CX043353 vs. ExPASy Swiss-Prot
Match: TSAP1_BOVIN (tRNA selenocysteine 1-associated protein 1 OS=Bos taurus GN=TRNAU1AP PE=2 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 7.536e-36 Identity = 82/176 (46.59%), Postives = 120/176 (68.18%), Query Frame = 1 Query: 298 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNK 813 +LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L NG P+P + F+LN+A++G ++ D++P++++FVGDL DV D ML E F YPS +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE G + ++P+R+ A K Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRLSVAIPK 176
BLAST of CX043353 vs. ExPASy Swiss-Prot
Match: TSAP1_RAT (tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus GN=Trnau1ap PE=1 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 9.843e-36 Identity = 83/176 (47.16%), Postives = 119/176 (67.61%), Query Frame = 1 Query: 298 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNK 813 +LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L NG P+P + F+LN+A++G ++ D++P++++FVGDL DV D ML E F YPS +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE G V +P+R+ A K Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPK 176
BLAST of CX043353 vs. ExPASy Swiss-Prot
Match: TSAP1_PONAB (tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii GN=TRNAU1AP PE=2 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 1.679e-35 Identity = 82/176 (46.59%), Postives = 119/176 (67.61%), Query Frame = 1 Query: 298 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNK 813 +LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L NG P+P + F+LN+ ++G ++ D++P++++FVGDL DV D ML E F YPS +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE G V ++P+R+ A K Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYVTYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPK 176
BLAST of CX043353 vs. ExPASy Swiss-Prot
Match: TSAP1_MOUSE (tRNA selenocysteine 1-associated protein 1 OS=Mus musculus GN=Trnau1ap PE=1 SV=2) HSP 1 Score: 149.443 bits (376), Expect = 2.193e-35 Identity = 83/176 (47.16%), Postives = 118/176 (67.05%), Query Frame = 1 Query: 298 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNK 813 +LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L NG P+P + F+LN+A++G ++ D++P++++FVGDL DV D ML E F YPS +G KVV+D TG +KGYGFV+F DE EQ RA+TE G V +P+R+ A K Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDP-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPK 176
BLAST of CX043353 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 2.680e-33 Identity = 75/177 (42.37%), Postives = 104/177 (58.76%), Query Frame = 1 Query: 298 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQ--IEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDT---PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 813 TLW+GDL+ WMD T++ +A E V VKV+R+K + + Y F++F S A AER L +N T +P F+LNWA+ G + + P+ +IFVGDL D L TFR+ YPS AK+++D +TG ++ YGFVRF E EQ A+ M G C RP+RI A+ K Sbjct: 86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPK 262
BLAST of CX043353 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2) HSP 1 Score: 140.198 bits (352), Expect = 1.330e-32 Identity = 71/174 (40.80%), Postives = 106/174 (60.92%), Query Frame = 1 Query: 298 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRD--DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 813 TLW+G+L+ W+ E ++ + G+ V VK+IRN+ TG GY F+EF S A + + N P+P F+LNWAS G ++ +++IFVGDL+ +V ++ + F +RY S K AK++ D T ++GYGFVRF DE++Q A+ EM G C RP+R+G AT K Sbjct: 94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPK 266
BLAST of CX043353 vs. ExPASy Swiss-Prot
Match: TSP1L_DANRE (tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio GN=trnau1apl PE=2 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 1.245e-30 Identity = 72/176 (40.91%), Postives = 109/176 (61.93%), Query Frame = 1 Query: 298 TLWIGDLQYWMDETYLNTCFAHTGEVV-AVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMP--NGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE-MNGVFCSTRPMRIGPATNK 813 +LW+GDL +MDE ++ F+ GE VK+I ++ TG GY F+E A +R +Q NG +P N + F+LN+A++G ++ + P+ ++FVGDL ++V DY L + F ++PS KGAKVV D G ++GYGFV+F DE+EQ +A+ E N +P+RI A NK Sbjct: 7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQRLNGKLVPGSNPPRKFKLNYATYG--KRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVVTDPY-GNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISIAVNK 179
BLAST of CX043353 vs. ExPASy Swiss-Prot
Match: TSAP1_DANRE (tRNA selenocysteine 1-associated protein 1 OS=Danio rerio GN=trnau1ap PE=2 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.515e-23 Identity = 61/161 (37.89%), Postives = 95/161 (59.01%), Query Frame = 1 Query: 292 IRTLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNG--EQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 765 + +LW+G+L+ +MDE ++ FA GE VV +++IR+K TG+ GYGF+E ER L+ NG P+P + F+L+ +++G K+ ++ ++FV DL DV D ML E F + S K+V+D G +K GFV F E EQ RA+ ++ G Sbjct: 1 MNSLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLRKVNGKPLPGATPPKRFKLSRSNYG---KQGESSTFSLFVSDLTPDVDDGMLYEFFHYHFSSCCSGKIVLD-ANGHSKCCGFVSFESEREQKRALVDLQG 157
BLAST of CX043353 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2) HSP 1 Score: 98.5969 bits (244), Expect = 4.439e-20 Identity = 65/190 (34.21%), Postives = 101/190 (53.16%), Query Frame = 1 Query: 301 LWIGDLQYWMDETYLNTCFAHTGEV-VAVKVIRNKQTGQ----------IEGYGFIEFISRAGAERVLQTFNGTPMPN-GEQNFRLNWASFGAGEKRDDTPDH------TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 816 L++GDL D+ + +A GE + V+++ N +GY F++F S A L NG +PN + +LNWA+ + + +IFVGDLA +VT+ L E F RY ST AK+V D++TG +KGYGFV+F + EQ A++EM GVF + R +++GP + ++ Sbjct: 56 LYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGPKNNQGYCFVDFPSSTHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKVGPTSGQQ 244 The following BLAST results are available for this feature:
BLAST of CX043353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043353 ID=CX043353; Name=CX043353; organism=Citrus sinensis; type=EST; length=816bpback to top |