CX043353

Overview
NameCX043353
Unique NameCX043353
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043353_ssr172 microsatellite CX043353_ssr172:172..183. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3951 contig Csv1_Contig3951:6..821. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043353 vs. ExPASy Swiss-Prot
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.770e-36
Identity = 83/176 (47.16%), Postives = 120/176 (68.18%), Query Frame = 1
Query:  298 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNK 813
            +LW+GDL+ +MDE +++  FA  GE V++VK+IRN+ TG   GY F+EF   A AE+ L   NG P+P     + F+LN+A++G  ++ D++P++++FVGDL  DV D ML E F   YPS +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE  G V   ++P+R+  A  K
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPK 176          
BLAST of CX043353 vs. ExPASy Swiss-Prot
Match: TSAP1_BOVIN (tRNA selenocysteine 1-associated protein 1 OS=Bos taurus GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.536e-36
Identity = 82/176 (46.59%), Postives = 120/176 (68.18%), Query Frame = 1
Query:  298 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNK 813
            +LW+GDL+ +MDE +++  FA  GE V++VK+IRN+ TG   GY F+EF   A AE+ L   NG P+P     + F+LN+A++G  ++ D++P++++FVGDL  DV D ML E F   YPS +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE  G +   ++P+R+  A  K
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRLSVAIPK 176          
BLAST of CX043353 vs. ExPASy Swiss-Prot
Match: TSAP1_RAT (tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus GN=Trnau1ap PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.843e-36
Identity = 83/176 (47.16%), Postives = 119/176 (67.61%), Query Frame = 1
Query:  298 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNK 813
            +LW+GDL+ +MDE +++  FA  GE V++VK+IRN+ TG   GY F+EF   A AE+ L   NG P+P     + F+LN+A++G  ++ D++P++++FVGDL  DV D ML E F   YPS +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE  G V    +P+R+  A  K
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPK 176          
BLAST of CX043353 vs. ExPASy Swiss-Prot
Match: TSAP1_PONAB (tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.679e-35
Identity = 82/176 (46.59%), Postives = 119/176 (67.61%), Query Frame = 1
Query:  298 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNK 813
            +LW+GDL+ +MDE +++  FA  GE V++VK+IRN+ TG   GY F+EF   A AE+ L   NG P+P     + F+LN+ ++G  ++ D++P++++FVGDL  DV D ML E F   YPS +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE  G V   ++P+R+  A  K
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYVTYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPK 176          
BLAST of CX043353 vs. ExPASy Swiss-Prot
Match: TSAP1_MOUSE (tRNA selenocysteine 1-associated protein 1 OS=Mus musculus GN=Trnau1ap PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 2.193e-35
Identity = 83/176 (47.16%), Postives = 118/176 (67.05%), Query Frame = 1
Query:  298 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNK 813
            +LW+GDL+ +MDE +++  FA  GE V++VK+IRN+ TG   GY F+EF   A AE+ L   NG P+P     + F+LN+A++G  ++ D++P++++FVGDL  DV D ML E F   YPS +G KVV+D  TG +KGYGFV+F DE EQ RA+TE  G V    +P+R+  A  K
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDP-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPK 176          
BLAST of CX043353 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.680e-33
Identity = 75/177 (42.37%), Postives = 104/177 (58.76%), Query Frame = 1
Query:  298 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQ--IEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDT---PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 813
            TLW+GDL+ WMD T++   +A   E V VKV+R+K +    +  Y F++F S A AER L  +N T +P     F+LNWA+ G  +  +     P+ +IFVGDL     D  L  TFR+ YPS   AK+++D +TG ++ YGFVRF  E EQ  A+  M G  C  RP+RI  A+ K
Sbjct:   86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPK 262          
BLAST of CX043353 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.330e-32
Identity = 71/174 (40.80%), Postives = 106/174 (60.92%), Query Frame = 1
Query:  298 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRD--DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 813
            TLW+G+L+ W+ E ++   +   G+ V VK+IRN+ TG   GY F+EF S   A   + + N  P+P     F+LNWAS G   ++      +++IFVGDL+ +V ++ +   F +RY S K AK++ D  T  ++GYGFVRF DE++Q  A+ EM G  C  RP+R+G AT K
Sbjct:   94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPK 266          
BLAST of CX043353 vs. ExPASy Swiss-Prot
Match: TSP1L_DANRE (tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio GN=trnau1apl PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.245e-30
Identity = 72/176 (40.91%), Postives = 109/176 (61.93%), Query Frame = 1
Query:  298 TLWIGDLQYWMDETYLNTCFAHTGEVV-AVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMP--NGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE-MNGVFCSTRPMRIGPATNK 813
            +LW+GDL  +MDE ++   F+  GE    VK+I ++ TG   GY F+E    A  +R +Q  NG  +P  N  + F+LN+A++G  ++ +  P+ ++FVGDL ++V DY L + F  ++PS KGAKVV D   G ++GYGFV+F DE+EQ +A+ E  N      +P+RI  A NK
Sbjct:    7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQRLNGKLVPGSNPPRKFKLNYATYG--KRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVVTDPY-GNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISIAVNK 179          
BLAST of CX043353 vs. ExPASy Swiss-Prot
Match: TSAP1_DANRE (tRNA selenocysteine 1-associated protein 1 OS=Danio rerio GN=trnau1ap PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.515e-23
Identity = 61/161 (37.89%), Postives = 95/161 (59.01%), Query Frame = 1
Query:  292 IRTLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNG--EQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 765
            + +LW+G+L+ +MDE ++   FA  GE VV +++IR+K TG+  GYGF+E       ER L+  NG P+P     + F+L+ +++G   K+ ++   ++FV DL  DV D ML E F   + S    K+V+D   G +K  GFV F  E EQ RA+ ++ G
Sbjct:    1 MNSLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLRKVNGKPLPGATPPKRFKLSRSNYG---KQGESSTFSLFVSDLTPDVDDGMLYEFFHYHFSSCCSGKIVLD-ANGHSKCCGFVSFESEREQKRALVDLQG 157          
BLAST of CX043353 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 4.439e-20
Identity = 65/190 (34.21%), Postives = 101/190 (53.16%), Query Frame = 1
Query:  301 LWIGDLQYWMDETYLNTCFAHTGEV-VAVKVIRNKQTGQ----------IEGYGFIEFISRAGAERVLQTFNGTPMPN-GEQNFRLNWASFGAGEKRDDTPDH------TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 816
            L++GDL    D+  +   +A  GE  + V+++ N                +GY F++F S   A   L   NG  +PN   +  +LNWA+       +   +       +IFVGDLA +VT+  L E F  RY ST  AK+V D++TG +KGYGFV+F +  EQ  A++EM GVF + R +++GP + ++
Sbjct:   56 LYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGPKNNQGYCFVDFPSSTHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKVGPTSGQQ 244          
The following BLAST results are available for this feature:
BLAST of CX043353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
TSAP1_HUMAN5.770e-3647.16tRNA selenocysteine 1-associated protein 1 OS=Homo... [more]
TSAP1_BOVIN7.536e-3646.59tRNA selenocysteine 1-associated protein 1 OS=Bos ... [more]
TSAP1_RAT9.843e-3647.16tRNA selenocysteine 1-associated protein 1 OS=Ratt... [more]
TSAP1_PONAB1.679e-3546.59tRNA selenocysteine 1-associated protein 1 OS=Pong... [more]
TSAP1_MOUSE2.193e-3547.16tRNA selenocysteine 1-associated protein 1 OS=Mus ... [more]
CSX1_SCHPO2.680e-3342.37RNA-binding post-transcriptional regulator csx1 OS... [more]
YG41_SCHPO1.330e-3240.80Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]
TSP1L_DANRE1.245e-3040.91tRNA selenocysteine 1-associated protein 1-like OS... [more]
TSAP1_DANRE2.515e-2337.89tRNA selenocysteine 1-associated protein 1 OS=Dani... [more]
NAM8_YEAST4.439e-2034.21Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10E07_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10E07-J14-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043353 ID=CX043353; Name=CX043353; organism=Citrus sinensis; type=EST; length=816bp
TTTCTCGCTTCAGAGTTCGGATTATTCTCTCGTTCAATCTCAATAACGAT
CATGATGCAGCCAGCGCCCGGAGCGGTCCCACCCCCGCCACCACCGATGG
CCGCTCACCAGTACCAATACCAACAACAGGCGCCGCCTCAGCAGCAGCCG
CCACCGCAACCCTCGCCGTACATGATGATGATGCCGCCTCAGCCCCAGGC
CCAGCCTCCTGCCATGTGGGCCACGCAGGCTGCTGCTCCTCAGGCGGCGG
GAGTTGCGGTACCACCTCAGCAGCAGGGTCAGCCCGGTGAGATCCGGACC
CTGTGGATCGGGGACTTGCAGTATTGGATGGATGAGACCTATCTCAACAC
TTGTTTTGCACACACCGGCGAGGTTGTCGCTGTAAAAGTAATTCGTAATA
AGCAAACTGGTCAAATAGAAGGTTATGGATTTATTGAGTTTATTTCGCGT
GCTGGTGCTGAAAGAGTTTTGCAGACATTTAACGGTACCCCTATGCCAAA
CGGTGAGCAGAACTTCAGGCTAAACTGGGCATCTTTTGGTGCTGGCGAGA
AGCGCGATGACACCCCTGACCACACAATATTTGTTGGAGATTTGGCTGCT
GACGTTACTGATTACATGCTTCAAGAGACCTTCAGGGCCCGCTATCCCTC
TACTAAAGGTGCAAAGGTTGTCATTGATAGGCTTACTGGACGCACAAAGG
GTTATGGATTTGTGAGATTTGGTGATGAAAGTGAACAGCTACGTGCCATG
ACTGAGATGAATGGTGTCTTTTGTTCTACGAGACCAATGCGGATTGGTCC
AGCTACTAATAAGAAA
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