CX301564

Overview
NameCX301564
Unique NameCX301564
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301564 vs. ExPASy Swiss-Prot
Match: RL182_ARATH (60S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B PE=2 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.349e-40
Identity = 90/159 (56.60%), Postives = 112/159 (70.44%), Query Frame = 1
Query:   37 FSFIGRRADSKFADTIVKRVRMSRINNAPISLSRLVRYVKGKEDKIAVIVGTVTDDPRLLEVPAVKVAALRFTETARARILKAGGEVLTLDQLALRAPKGSNTILLRGRKSVRESIKYFGHRTSVNNPHTHDGVKPRTISXXXXXXXXXXXXXSNGFKV 513
            + F+ RR +SKF   I+KR+ MS++N AP+SLSRLV ++ GKEDKIAV+VGT+TDD R+ E+PA+KV ALRFTE ARARI KAGGE LT DQLALRAP G NT+LLRG K+ RE++K+FG    V  PH+H   KP   +             S GFKV
Sbjct:   33 YRFLVRRTNSKFNGVILKRLFMSKVNKAPLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGV--PHSHS--KPYVRAKGRKFEKARGKRKSRGFKV 187          
BLAST of CX301564 vs. ExPASy Swiss-Prot
Match: RL183_ARATH (60S ribosomal protein L18-3 OS=Arabidopsis thaliana GN=RPL18C PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 9.667e-39
Identity = 86/159 (54.09%), Postives = 108/159 (67.92%), Query Frame = 1
Query:   37 FSFIGRRADSKFADTIVKRVRMSRINNAPISLSRLVRYVKGKEDKIAVIVGTVTDDPRLLEVPAVKVAALRFTETARARILKAGGEVLTLDQLALRAPKGSNTILLRGRKSVRESIKYFGHRTSVNNPHTHDGVKPRTISXXXXXXXXXXXXXSNGFKV 513
            + F+ RR++S F   I+KR+ MS++N AP+SLSRLV ++ GK+DKIAV+VGT+TDD R+ E+PA+KV ALRFTE ARARI KAGGE LT DQLALRAP G NT+LLRG K+ RE++K+FG    V     H   KP                 S GFKV
Sbjct:   33 YRFLVRRSNSNFNAVILKRLFMSKVNKAPLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGV----PHSNTKPYVRHKGRKFEKARGKRKSRGFKV 187          
BLAST of CX301564 vs. ExPASy Swiss-Prot
Match: RL181_ARATH (Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana GN=RPL18A PE=2 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 6.928e-37
Identity = 88/158 (55.70%), Postives = 108/158 (68.35%), Query Frame = 1
Query:   43 FIGRRADSKFADTIVKRVRMSRINNAPISLSRLVRYVKGKEDKIAVIVGTVTDDPRLLEVPAVKVAALRFTETARARILKAGGEVLTLDQLALRAPKGS-NTILLRGRKSVRESIKYFGHRTSVNNPHTHDGVKPRTISXXXXXXXXXXXXXSNGFKV 513
            ++ RR +SKF   I+KR+ MS++N AP+SLSRLVRY+ GK+ KIAVIVGTVTDD R+ +VPA+ V ALRFTE+ARARI KAGGE LT DQLAL  P  S NT+LLRG K+ RE++K+FG    V  PH+H   KP                 S GFKV
Sbjct:   35 YLVRRTESKFNAVILKRLFMSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGV--PHSH--TKPYVRQTGKKIEIARGRRRSRGFKV 188          
BLAST of CX301564 vs. ExPASy Swiss-Prot
Match: RL18_CICAR (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum GN=RPL18 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.016e-36
Identity = 83/159 (52.20%), Postives = 108/159 (67.92%), Query Frame = 1
Query:   37 FSFIGRRADSKFADTIVKRVRMSRINNAPISLSRLVRYVKGKEDKIAVIVGTVTDDPRLLEVPAVKVAALRFTETARARILKAGGEVLTLDQLALRAPKGSNTILLRGRKSVRESIKYFGHRTSVNNPHTHDGVKPRTISXXXXXXXXXXXXXSNGFKV 513
            + F+ RR DS F   I+KR+ MS++N  P+SLSRL++Y++GKE KI V+VG VTDD R+ +VP +KV AL+FTETARARI KAGGE LT DQLALR P  ++T+LLRG K+ RE++K+FG    V  PH+H   KP   S             S GF+V
Sbjct:   30 YRFLVRRTDSNFNAVILKRLFMSKVNRPPLSLSRLIKYMQGKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFDQLALRLPL-TDTVLLRGPKNAREAVKHFGPAPGV--PHSH--TKPYVRSKGRKFEKARGRRKSRGFRV 183          
BLAST of CX301564 vs. ExPASy Swiss-Prot
Match: RL18B_SCHPO (60S ribosomal protein L18-B OS=Schizosaccharomyces pombe GN=rpl18b PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.218e-34
Identity = 78/135 (57.78%), Postives = 95/135 (70.37%), Query Frame = 1
Query:   37 FSFIGRRADSKFADTIVKRVRMSRINNAPISLSRLVRYVKGK----EDKIAVIVGTVTDDPRLLEVPAVKVAALRFTETARARILKAGGEVLTLDQLALRAPKGSNTILLRGRKSVRESIKYFGHRTSVNNPHTH 429
            + F+ RR DS+F   I+KR+  S+ N  PIS+S++      K    E K  VIVGTVTDD RLL VP + VAALRFT++ARARILKAGGEVLTLDQLALRAP GSNT+LLRG+K  RE+ ++FG       PH H
Sbjct:   32 YRFLARRTDSRFNKAILKRLFQSKTNRPPISISKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLLRGKKHAREAYRHFGF-----GPHKH 161          
BLAST of CX301564 vs. ExPASy Swiss-Prot
Match: RL18A_SCHPO (60S ribosomal protein L18-A OS=Schizosaccharomyces pombe GN=rpl18a PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.724e-33
Identity = 73/135 (54.07%), Postives = 96/135 (71.11%), Query Frame = 1
Query:   37 FSFIGRRADSKFADTIVKRVRMSRINNAPISLSRLVRYVKGK----EDKIAVIVGTVTDDPRLLEVPAVKVAALRFTETARARILKAGGEVLTLDQLALRAPKGSNTILLRGRKSVRESIKYFGHRTSVNNPHTH 429
            + F+ RR DS+F   I+KR+  S+ N  PIS+S++      K    ++K  V+VGTVTDD R+L VP + +AALRFT++ARARILKAGGEVLTLDQLALRAP GSNT+L+RG+K  RE+ ++FG       PH H
Sbjct:   32 YRFLARRTDSRFNKAILKRLFQSKTNRPPISISKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLVRGKKHAREAYRHFGF-----GPHKH 161          
BLAST of CX301564 vs. ExPASy Swiss-Prot
Match: RL18_TIMBA (60S ribosomal protein L18 OS=Timarcha balearica GN=RpL18 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.558e-33
Identity = 72/133 (54.14%), Postives = 100/133 (75.19%), Query Frame = 1
Query:   37 FSFIGRRADSKFADTIVKRVRMSRINNAPISLSRLVRYVK--GKEDKIAVIVGTVTDDPRLLEVPAVKVAALRFTETARARILKAGGEVLTLDQLALRAPKGSNTILLRGRKSVRESIKYFGHRTSVNNPHTH 429
            + ++ RR  +KF   I+KR+ MS+I   PISLS++VR++K  G+E   AVIVGTVTDD R+ E+P + + ALR T+TARA ILKAGGEV+T DQLALR+P GS T+LL+G+++ RE++K+FG    V  PH+H
Sbjct:   32 YRYLARRTGAKFNKIILKRLFMSKIYRPPISLSKVVRFMKKPGRELLTAVIVGTVTDDSRIFEIPKLSICALRVTQTARAGILKAGGEVITFDQLALRSPTGSKTVLLQGKRNAREAVKHFGPAPGV--PHSH 162          
BLAST of CX301564 vs. ExPASy Swiss-Prot
Match: RL18_SPOFR (60S ribosomal protein L18 OS=Spodoptera frugiperda GN=RpL18 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.558e-33
Identity = 74/147 (50.34%), Postives = 102/147 (69.39%), Query Frame = 1
Query:   37 FSFIGRRADSKFADTIVKRVRMSRINNAPISLSRLVRYVKG--KEDKIAVIVGTVTDDPRLLEVPAVKVAALRFTETARARILKAGGEVLTLDQLALRAPKGSNTILLRGRKSVRESIKYFGHRTSVNNPHT--------HDGVKPR 447
            + ++ RR +SKF   I++R+ MSRIN  P+SLSRL R++K   +E  IAV+VGT+T+D RL +VP + VAAL  TE ARARIL AGGE+LT DQLALRAP G+ T+LL+GR++ RE++++FG        HT        H+  +PR
Sbjct:   32 YRYLARRTNSKFNTIILRRLFMSRINRPPLSLSRLARHMKKPTREGMIAVVVGTITNDVRLYKVPKMSVAALHVTEKARARILAAGGEILTFDQLALRAPTGAKTVLLQGRRNAREAVRHFGPAPGAPRSHTKPYVRTKGHERARPR 178          
BLAST of CX301564 vs. ExPASy Swiss-Prot
Match: RL18_DIACI (60S ribosomal protein L18 OS=Diaphorina citri GN=RpL18 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 7.927e-33
Identity = 68/139 (48.92%), Postives = 103/139 (74.10%), Query Frame = 1
Query:   37 FSFIGRRADSKFADTIVKRVRMSRINNAPISLSRLVRYVKG--KEDKIAVIVGTVTDDPRLLEVPAVKVAALRFTETARARILKAGGEVLTLDQLALRAPKGSNTILLRGRKSVRESIKYFGHRTSVNNPHTHDGVKPR 447
            + F+ RR +SKF   I+KR+ MS+IN  P+++S++VR++K   +E ++AVIVGT+ DDPR+  +P + V ALR T+ AR+RILKAGGE++T DQLALRAP G NT+L++G+++ RE+ K+FG    V + HT   V+ +
Sbjct:   32 YRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTVCALRVTDKARSRILKAGGEIITFDQLALRAPTGKNTVLMQGKRTGREANKHFGPAPGVPHSHTKAHVRSK 170          
BLAST of CX301564 vs. ExPASy Swiss-Prot
Match: RL18_IXOSC (60S ribosomal protein L18 OS=Ixodes scapularis GN=RpL18 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.035e-32
Identity = 71/139 (51.08%), Postives = 103/139 (74.10%), Query Frame = 1
Query:   37 FSFIGRRADSKFADTIVKRVRMSRINNAPISLSRLVRYVK--GKEDKIAVIVGTVTDDPRLLEVPAVKVAALRFTETARARILKAGGEVLTLDQLALRAPKGSNTILLRGRKSVRESIKYFGHRTSVNNPHTHDGVKPR 447
            + F+ RR+ +KF   ++KR+ MSRIN   ISL+R+ R++K  G+E+ IAV+VGTVTDD RL +VP +++ ALR TE ARARILKAGGE+LT DQLA++APKG  T+L++G ++ RE+ ++FG    V + HT   V+ +
Sbjct:   32 YRFLARRSGAKFNRIVLKRLFMSRINKPVISLARVTRFMKKPGRENLIAVVVGTVTDDLRLYDVPKLRLCALRVTERARARILKAGGEILTFDQLAVQAPKGKGTVLMQGPRNSREACRHFGPAPGVPHSHTKPYVRSK 170          
The following BLAST results are available for this feature:
BLAST of CX301564 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RL182_ARATH1.349e-4056.6060S ribosomal protein L18-2 OS=Arabidopsis thalian... [more]
RL183_ARATH9.667e-3954.0960S ribosomal protein L18-3 OS=Arabidopsis thalian... [more]
RL181_ARATH6.928e-3755.70Putative 60S ribosomal protein L18-1 OS=Arabidopsi... [more]
RL18_CICAR2.016e-3652.2060S ribosomal protein L18 (Fragment) OS=Cicer arie... [more]
RL18B_SCHPO3.218e-3457.7860S ribosomal protein L18-B OS=Schizosaccharomyces... [more]
RL18A_SCHPO2.724e-3354.0760S ribosomal protein L18-A OS=Schizosaccharomyces... [more]
RL18_TIMBA3.558e-3354.1460S ribosomal protein L18 OS=Timarcha balearica GN... [more]
RL18_SPOFR3.558e-3350.3460S ribosomal protein L18 OS=Spodoptera frugiperda... [more]
RL18_DIACI7.927e-3348.9260S ribosomal protein L18 OS=Diaphorina citri GN=R... [more]
RL18_IXOSC1.035e-3251.0860S ribosomal protein L18 OS=Ixodes scapularis GN=... [more]

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Properties
Property NameValue
Genbank descriptionC08011B06SK PhyRootSw1 Citrus sinensis cDNA clone C08011B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301564 ID=CX301564; Name=CX301564; organism=Citrus sinensis; type=EST; length=609bp
CTTTTCCTTCTTCTCCATGATGCCTTTTTTTATTATTTCAGCTTCATTGG
ACGTCGTGCTGATTCCAAGTTCGCTGACACCATTGTCAAGAGAGTCAGAA
TGTCCAGAATTAACAACGCTCCTATCTCCCTCTCTAGATTAGTTAGATAC
GTCAAGGGCAAGGAAGACAAGATCGCCGTCATTGTTGGAACTGTCACTGA
TGATCCAAGATTACTTGAGGTCCCAGCCGTCAAGGTTGCCGCCTTAAGAT
TCACTGAAACTGCCCGCGCCAGAATCCTCAAGGCTGGTGGTGAAGTCTTG
ACCCTTGATCAATTAGCCTTAAGAGCTCCTAAGGGTTCTAACACTATCTT
ACTCCGTGGCCGCAAGAGCGTTCGTGAATCCATCAAGTACTTTGGTCACA
GAACTTCTGTCAACAACCCACACACTCACGATGGTGTCAAGCCAAGAACC
ATCTCCAAGGGACGCAAGTTCGAGCGTGCTCGTGGTCGCAGAAGATCCAA
TGGTTTCAAGGTGTAAATTTGATGGTTTACTATCATCAAGTTTATATCGT
TGAAGCACCAATAATAAAAGATGTAAAAACAACCTACGATACCCTCATCT
ACCCACAAT
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