CX301563

Overview
NameCX301563
Unique NameCX301563
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2756 contig Csv1_Contig2756:1973..2621. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX301563 vs. ExPASy Swiss-Prot
Match: SFR2_ORYSJ (Beta-glucosidase-like SFR2, chloroplastic OS=Oryza sativa subsp. japonica GN=SFR2 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.052e-41
Identity = 82/113 (72.57%), Postives = 91/113 (80.53%), Query Frame = 1 
Query:   19 ANNLARIPRPSYHLFTKVVTTGKVTREDRARAWSELQLAAKQKKTRPFYRAVNKHGLMYAGGLDEPTQRPYIQRDWRFGHYQMEGLQDPLSRLSRCILRPFSIIKKREPQKDD 357
            ANNLAR PRPSY LF++VVTTGK+TR+DR  AW ELQ AA QKKTRPF+RAV+KHG MYAGGLD P QRP+I RDWRFGHY+MEGLQDPLS   RCI  PFS  KK    +DD
Sbjct:  528 ANNLARKPRPSYFLFSRVVTTGKITRQDRMSAWRELQQAAVQKKTRPFFRAVDKHGRMYAGGLDRPIQRPFILRDWRFGHYKMEGLQDPLSCFIRCIFAPFSRQKKIHYIEDD 640
[Close]
BLAST of CX301563 vs. ExPASy Swiss-Prot
Match: SFR2_ARATH (Beta-glucosidase-like SFR2, chloroplastic OS=Arabidopsis thaliana GN=SFR2 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.280e-35
Identity = 74/125 (59.20%), Postives = 93/125 (74.40%), Query Frame = 1 
Query:   19 ANNLARIPRPSYHLFTKVVTTGKVTREDRARAWSELQLAAKQKKTRPFYRAVNKHGLMYAGGLDEPTQRPYIQRDWRFGHYQMEGLQDPLSRLSRCILRPFSIIKKR-----EPQKDDAELVVQP 378
            +++LAR  R SYHLF+K+V +GKVTR+DR+ AW+ELQ AAK  K RPFYR V+ H LMYA GLD+P  RP++ RDWRFGHYQM+GLQDPLSR++R +L    I+KKR         DDA LV+ P
Sbjct:  491 SHDLARTLRQSYHLFSKIVKSGKVTRKDRSLAWNELQKAAKAGKLRPFYRGVDNHNLMYADGLDKPQWRPFVDRDWRFGHYQMDGLQDPLSRVARTLLIWPLIMKKRIRKVKIKHTDDAGLVLHP 615
The following BLAST results are available for this feature:
BLAST of CX301563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SFR2_ORYSJ1.052e-4172.57Beta-glucosidase-like SFR2, chloroplastic OS=Oryza... [more]
SFR2_ARATH4.280e-3559.20Beta-glucosidase-like SFR2, chloroplastic OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionC08011B05SK PhyRootSw1 Citrus sinensis cDNA clone C08011B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301563 ID=CX301563; Name=CX301563; organism=Citrus sinensis; type=EST; length=649bp
CGAATTCGGCACGAGGGGGCAAACAATCTTGCCCGCATTCCTCGTCCTTC
GTACCATCTATTTACCAAGGTAGTCACTACTGGTAAAGTCACACGTGAAG
ACCGAGCACGTGCATGGAGTGAACTTCAATTAGCTGCTAAACAAAAAAAG
ACACGACCATTCTATCGGGCAGTTAATAAACATGGATTGATGTATGCAGG
AGGCCTTGATGAACCAACTCAACGGCCTTATATCCAACGAGATTGGCGGT
TTGGACACTATCAGATGGAAGGTCTGCAGGACCCACTAAGCCGCTTATCA
AGATGCATTCTGAGACCATTCTCTATTATAAAGAAAAGAGAACCTCAGAA
GGATGATGCTGAATTGGTTGTCCAACCTCTTCAATTCAGTATCTAAGTGC
CTATCTCTGCTGGCGATCTTTATGATTTCCTTCTCTAAAGCTACCGAGGA
CATGATTCAATTGCTTAAAGGTATCTGTTGCAACAGATAAATGATGTTCA
TAAGGATGTTGGCGCCTGGCGGTCATATATTATTGAAACAGATTGGTTAT
TTTTCTTAGAAATGATGCANATGAAATGTTGTATAAATAATTAATTTGGA
AAACAAATTACGTATGCAAGAAATCATCTTAATATATAACAATTCCCTC
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