CX301557

Overview
NameCX301557
Unique NameCX301557
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301557 vs. ExPASy Swiss-Prot
Match: SYF1_CRYNE (Pre-mRNA-splicing factor SYF1 OS=Cryptococcus neoformans GN=SYF1 PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 4.187e-71
Identity = 130/215 (60.47%), Postives = 164/215 (76.28%), Query Frame = 2
Query:    5 LEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASY-SQTHFI 646
            LEE+KYFE++F+VYERG+++F +P   +IW  YLSKFVKRYG  KLERAR+LFE A+E  P    KPLYL YAKLEE++GLAKRAM +YD+A   V + +K  MY IYIA+A   FG+P TR IYE+A+ES LPDK    MC ++A +E+ LGEIDRAR IY  ASQF DPR + EFW  W++FE+  G+EDTFREMLRIKR+V AS+ ++T FI
Sbjct:  730 LEENKYFEESFKVYERGIELFHFPIAFEIWNIYLSKFVKRYGGKKLERARDLFEQALENCPEKFCKPLYLMYAKLEEEHGLAKRAMGIYDRAASTVQDSDKFEMYTIYIAKATANFGLPATRPIYERALES-LPDKQTAEMCRRFARMERKLGEIDRARAIYAHASQFCDPRIEPEFWQEWNDFEIETGSEDTFREMLRIKRAVQASFNTETSFI 943          
BLAST of CX301557 vs. ExPASy Swiss-Prot
Match: SYF1_USTMA (Pre-mRNA-splicing factor SYF1 OS=Ustilago maydis GN=SYF1 PE=3 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.347e-69
Identity = 125/209 (59.81%), Postives = 161/209 (77.03%), Query Frame = 2
Query:    5 LEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYS 631
            LE++KYFE++F+V+ERGV++F YP   +IW  YLSKFVKRYG  KLERAR+LFE A++  PA   KPL L Y +LEE++GL KRAMK+Y++AT+AV   ++  MY  YIA+AA  FG+  TR IYE+AIES LPD+    MCL++A LE+ LGEIDRAR IY  ASQF DPR+ T+FW  W++FE+  G+EDTFREMLRIKRSV A ++
Sbjct:  777 LEDNKYFEESFKVFERGVELFSYPVAFEIWNVYLSKFVKRYGGAKLERARDLFEQALDKCPARFCKPLMLMYGQLEEEHGLVKRAMKIYERATRAVSTDDRFDMYVFYIAKAAATFGLAATRPIYERAIES-LPDRQTAEMCLRFAALERKLGEIDRARVIYAHASQFCDPRTQTDFWKEWNQFEIETGSEDTFREMLRIKRSVQAQFN 984          
BLAST of CX301557 vs. ExPASy Swiss-Prot
Match: SYF1_RAT (Pre-mRNA-splicing factor SYF1 OS=Rattus norvegicus GN=Xab2 PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 3.001e-69
Identity = 127/220 (57.73%), Postives = 165/220 (75.00%), Query Frame = 2
Query:    5 LEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASY-SQTHFILPEYL 661
            LEEHKYFE++F+ YERG+ +FK+P+V DIW TYL+KF+ RYG  KLERAR+LFE A++  P    K LYL YA+LEE++GLA+ AM VYD+AT+AV   ++  M+ IYI RAAEI+GV  TR IY++AIE  L D+  + MCL++A++E  LGEIDRAR IY F SQ  DPR+   FW  W +FEV HGNEDT REMLRI+RSV A+Y +Q +F+  + L
Sbjct:  528 LEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFISRYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEV-LSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQVNFMASQML 746          
BLAST of CX301557 vs. ExPASy Swiss-Prot
Match: SYF1_MOUSE (Pre-mRNA-splicing factor SYF1 OS=Mus musculus GN=Xab2 PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 3.001e-69
Identity = 127/220 (57.73%), Postives = 165/220 (75.00%), Query Frame = 2
Query:    5 LEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASY-SQTHFILPEYL 661
            LEEHKYFE++F+ YERG+ +FK+P+V DIW TYL+KF+ RYG  KLERAR+LFE A++  P    K LYL YA+LEE++GLA+ AM VYD+AT+AV   ++  M+ IYI RAAEI+GV  TR IY++AIE  L D+  + MCL++A++E  LGEIDRAR IY F SQ  DPR+   FW  W +FEV HGNEDT REMLRI+RSV A+Y +Q +F+  + L
Sbjct:  528 LEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFISRYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEV-LSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQVNFMASQML 746          
BLAST of CX301557 vs. ExPASy Swiss-Prot
Match: SYF1_HUMAN (Pre-mRNA-splicing factor SYF1 OS=Homo sapiens GN=XAB2 PE=1 SV=2)

HSP 1 Score: 258.455 bits (659), Expect = 2.540e-68
Identity = 125/220 (56.82%), Postives = 165/220 (75.00%), Query Frame = 2
Query:    5 LEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASY-SQTHFILPEYL 661
            LEEHKYFE++F+ YERG+ +FK+P+V DIW TYL+KF+ RYG  KLERAR+LFE A++  P    K LYL YA+LEE++GLA+ AM VY++AT+AV   ++  M+ IYI RAAEI+GV  TR IY++AIE  L D+  + MCL++A++E  LGEIDRAR IY F SQ  DPR+   FW  W +FEV HGNEDT +EMLRI+RSV A+Y +Q +F+  + L
Sbjct:  528 LEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEV-LSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIKEMLRIRRSVQATYNTQVNFMASQML 746          
BLAST of CX301557 vs. ExPASy Swiss-Prot
Match: SYF1_DICDI (Pre-mRNA-splicing factor SYF1 OS=Dictyostelium discoideum GN=xab2 PE=3 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 6.257e-67
Identity = 119/208 (57.21%), Postives = 154/208 (74.04%), Query Frame = 2
Query:    5 LEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASY 628
            LEE+KYFED F+ YE GV++F +PHV+DIW+TYL+KF++RY   KLER R+LFE  +   P       YL YA  EE YGLA+ +M VYD+A K+V   ++  MY +YI RA+E FGV +TREI+ +AIE  LPD+ V+ MCLK+A++EK  GEIDRAR IY+  SQF+DPR+   +WN W +FE  HGNEDTF+EMLRI+RSV ASY
Sbjct:  541 LEENKYFEDMFKAYEHGVQLFLFPHVQDIWITYLTKFIQRYAGMKLERTRDLFEQVLSKVPPKESIIFYLMYANFEEQYGLARHSMAVYDRAAKSVDKEDRFKMYLLYIHRASEFFGVNQTREIFSKAIEQ-LPDQYVRDMCLKFADMEKKYGEIDRARSIYIHGSQFSDPRTSMFYWNTWSDFEKLHGNEDTFKEMLRIRRSVQASY 747          
BLAST of CX301557 vs. ExPASy Swiss-Prot
Match: SYF1_EMENI (Pre-mRNA-splicing factor syf1 OS=Emericella nidulans GN=syf1 PE=3 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.378e-66
Identity = 122/227 (53.74%), Postives = 164/227 (72.25%), Query Frame = 2
Query:    2 LLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASY-SQTHFILPEYLMQKDQR 679
            LLEEHKYFE++F+VYERG+ +F YP   ++W  YL+K V R  K  +ER R+LFE A++  P    +PLYL Y  LEE+ GLA+ AM++Y++AT+AV + ++  M+E YI ++A  FG+P TR IYE+AI + LPD + K MCLK+AE+E+ LGEIDRAR IY  ASQF DPR++  FW +W  FEV HGNEDTF+EMLRIKRSV A Y +  +FI  + + +  QR
Sbjct:  553 LLEEHKYFEESFKVYERGLDLFTYPVAFELWNLYLTKAVDR--KIGIERLRDLFEQALDGCPPKFARPLYLMYGNLEEERGLARHAMRIYERATRAVSDEDRFEMFEFYITKSASNFGLPSTRPIYERAI-AALPDHEAKEMCLKFAEMERRLGEIDRARAIYGHASQFCDPRTNAPFWQKWEAFEVQHGNEDTFKEMLRIKRSVQAQYNTDVNFIASQAIARSQQR 776          
BLAST of CX301557 vs. ExPASy Swiss-Prot
Match: SYF1_ASPFU (Pre-mRNA-splicing factor syf1 OS=Aspergillus fumigatus GN=syf1 PE=3 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.056e-66
Identity = 122/227 (53.74%), Postives = 164/227 (72.25%), Query Frame = 2
Query:    2 LLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASY-SQTHFILPEYLMQKDQR 679
            LLEEHKYFED+F+VYERG+ +F YP   ++W  YL+K V R  K  +ER R+LFE A++  P    KPLYL Y  LEE+ GLA+ AM++Y++AT+AV + ++  M+E YI ++A  FG+  TR IYE+AI + LPD++ K MCLK+A++E+ LGEIDRAR IY  ASQF DPR++  FW +W  FEV HGNEDTF+EMLRIKRSV A Y +  +FI  + + +  QR
Sbjct:  536 LLEEHKYFEDSFKVYERGLDLFSYPVAFELWNLYLTKAVDR--KIGIERLRDLFEQALDGCPPKFAKPLYLMYGNLEEERGLARHAMRIYERATRAVSDEDRFEMFEFYITKSASNFGLTSTRPIYERAI-AALPDQEAKEMCLKFADMERRLGEIDRARAIYGHASQFCDPRTNAGFWQKWEAFEVQHGNEDTFKEMLRIKRSVQAQYNTDVNFIASQAIARSQQR 759          
BLAST of CX301557 vs. ExPASy Swiss-Prot
Match: SYF1_NEUCR (Pre-mRNA-splicing factor syf-1 OS=Neurospora crassa GN=syf-1 PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 5.856e-65
Identity = 119/227 (52.42%), Postives = 163/227 (71.81%), Query Frame = 2
Query:    2 LLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASY-SQTHFILPEYLMQKDQR 679
            LLEEHKYFE++F++YERG+ +F YP   ++W  YL+K V R  K  +ER R+LFE AVE  P    K +YL Y  LEE+ GLA+ AM++Y++AT+AV + ++  M+  YI ++A  FG+P TR IYE+AI + LPD + + MCLK+A++EK LGEIDRAR IY  ASQF DPR++  FW +W +FEV HGNEDT++EMLRIKRSV A Y +  +FI  + L +  Q+
Sbjct:  539 LLEEHKYFEESFKIYERGLDLFSYPVAFELWNLYLTKAVDR--KISIERLRDLFEQAVEDCPPKFAKVIYLMYGNLEEERGLARHAMRIYERATRAVADEDRADMFNFYITKSASNFGLPSTRPIYERAI-AALPDAEARDMCLKFADMEKRLGEIDRARAIYGHASQFCDPRTNPGFWTKWDQFEVQHGNEDTYKEMLRIKRSVQAQYNTDVNFIASQALARSQQK 762          
BLAST of CX301557 vs. ExPASy Swiss-Prot
Match: SYF1_MAGGR (Pre-mRNA-splicing factor SYF1 OS=Magnaporthe grisea GN=SYF1 PE=3 SV=2)

HSP 1 Score: 246.128 bits (627), Expect = 1.305e-64
Identity = 118/227 (51.98%), Postives = 163/227 (71.81%), Query Frame = 2
Query:    2 LLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASY-SQTHFILPEYLMQKDQR 679
            LLEEHKY+E++F++YERG+ +F YP   ++W  YL+K V R  K  +ER R+LFE AVE  P    K +YL Y  LEE+ GLA+ AM++Y++AT+AV + ++  M+  YI ++A  FG+P TR+IYE+AI + LPD + + MCLK+A++EK LGEIDRAR IY  ASQF DPR+   FW +W +FEV HGNEDTF+EMLRIKR+V A Y +  +FI  + L +  Q+
Sbjct:  542 LLEEHKYYEESFKIYERGLDLFSYPVAFELWNMYLTKAVDR--KISIERLRDLFEQAVEGCPPKFAKIIYLMYGNLEEERGLARHAMRIYERATRAVSDEDRADMFNFYITKSASNFGLPSTRQIYERAI-AALPDDEARDMCLKFADMEKRLGEIDRARAIYGHASQFCDPRTTPAFWTKWEQFEVQHGNEDTFKEMLRIKRAVQAKYNTDVNFIASQALARSQQQ 765          
The following BLAST results are available for this feature:
BLAST of CX301557 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
SYF1_CRYNE4.187e-7160.47Pre-mRNA-splicing factor SYF1 OS=Cryptococcus neof... [more]
SYF1_USTMA1.347e-6959.81Pre-mRNA-splicing factor SYF1 OS=Ustilago maydis G... [more]
SYF1_RAT3.001e-6957.73Pre-mRNA-splicing factor SYF1 OS=Rattus norvegicus... [more]
SYF1_MOUSE3.001e-6957.73Pre-mRNA-splicing factor SYF1 OS=Mus musculus GN=X... [more]
SYF1_HUMAN2.540e-6856.82Pre-mRNA-splicing factor SYF1 OS=Homo sapiens GN=X... [more]
SYF1_DICDI6.257e-6757.21Pre-mRNA-splicing factor SYF1 OS=Dictyostelium dis... [more]
SYF1_EMENI2.378e-6653.74Pre-mRNA-splicing factor syf1 OS=Emericella nidula... [more]
SYF1_ASPFU4.056e-6653.74Pre-mRNA-splicing factor syf1 OS=Aspergillus fumig... [more]
SYF1_NEUCR5.856e-6552.42Pre-mRNA-splicing factor syf-1 OS=Neurospora crass... [more]
SYF1_MAGGR1.305e-6451.98Pre-mRNA-splicing factor SYF1 OS=Magnaporthe grise... [more]

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Properties
Property NameValue
Genbank descriptionC08011A11SK PhyRootSw1 Citrus sinensis cDNA clone C08011A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301557 ID=CX301557; Name=CX301557; organism=Citrus sinensis; type=EST; length=695bp
GCTTCTGGAAGAGCATAAATACTTTGAAGATGCATTCAGAGTATACGAAA
GAGGTGTCAAGATTTTTAAGTACCCTCATGTTAAAGATATATGGGTCACA
TACCTCTCAAAGTTCGTTAAGAGATATGGGAAGACAAAACTTGAACGGGC
AAGAGAGTTGTTTGAAAATGCCGTTGAAACGGCCCCTGCTGATGCAGTTA
AACCTTTATACCTTCAATATGCTAAGCTAGAGGAGGATTATGGTCTAGCT
AAGCGAGCTATGAAGGTCTATGATCAGGCAACTAAGGCAGTTCCAAACCA
TGAAAAATTGGGCATGTATGAAATATACATTGCTCGAGCAGCTGAAATTT
TTGGTGTCCCGAAAACAAGGGAAATTTATGAGCAAGCAATAGAATCCGGA
CTTCCAGACAAGGATGTGAAGGCGATGTGCTTGAAGTATGCTGAATTAGA
AAAGAGCTTGGGAGAAATTGACAGGGCCCGTGGGATATATGTGTTTGCAT
CTCAATTTGCCGATCCAAGATCTGATACTGAATTCTGGAATAGATGGCAT
GAGTTTGAGGTGAACCATGGAAATGAAGACACCTTCAGAGAAATGTTGCG
TATTAAGCGAAGTGTTTCAGCAAGCTATAGCCAGACGCATTTTATTCTTC
CAGAGTATCTTATGCAGAAAGATCAAAGATTATCCATCGATGATG
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