CX301551

Overview
NameCX301551
Unique NameCX301551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301551 vs. ExPASy Swiss-Prot
Match: RL111_ARATH (60S ribosomal protein L11-1 OS=Arabidopsis thaliana GN=RPL11A PE=1 SV=2)

HSP 1 Score: 265.388 bits (677), Expect = 1.839e-70
Identity = 126/174 (72.41%), Postives = 152/174 (87.36%), Query Frame = 2
Query:   29 MSNEDKLKNPMRQLKVDKLIINCCVGESGDRLTRAAKVLEQLTDKKPVYSKARYTVRSFGIRRNEKIAVHVTVRGFKANEILDRGLKVKEYELKKKNFSNTGCFGFGITEHIDLGLKYDPATGIFGMDFYVVLIRPGYRVARRKIKPGRIGNKHRVTKDDAIAWFQQKYEGIVM 550
            M++E KL NPMR +KV KL++N  VGESGDRLTRA+KVLEQL+ + PV+SKARYTVRSFGIRRNEKIA +VTVRG KA ++L+ GLKVKEYEL ++NFS+TGCFGFGI EHIDLG+KYDP+TGI+GMDFYVVL RPGYRVARR+    R+G +HRVTKDDA+ WFQ KYEG+++
Sbjct:    1 MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVIL 174          
BLAST of CX301551 vs. ExPASy Swiss-Prot
Match: RL112_ARATH (60S ribosomal protein L11-2 OS=Arabidopsis thaliana GN=RPL11B PE=2 SV=2)

HSP 1 Score: 264.618 bits (675), Expect = 3.137e-70
Identity = 126/174 (72.41%), Postives = 152/174 (87.36%), Query Frame = 2
Query:   29 MSNEDKLKNPMRQLKVDKLIINCCVGESGDRLTRAAKVLEQLTDKKPVYSKARYTVRSFGIRRNEKIAVHVTVRGFKANEILDRGLKVKEYELKKKNFSNTGCFGFGITEHIDLGLKYDPATGIFGMDFYVVLIRPGYRVARRKIKPGRIGNKHRVTKDDAIAWFQQKYEGIVM 550
            M++E KL NPMR +KV KL++N  VGESGDRLTRA+KVLEQL+ + PV+SKARYTVRSFGIRRNEKIA +VTVRG KA ++L+ GLKVKEYEL ++NFS+TGCFGFGI EHIDLG+KYDP+TGI+GMDFYVVL RPGYRVARR+    R+G +HRVTKDDA+ WFQ KYEG+++
Sbjct:    1 MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVIL 174          
BLAST of CX301551 vs. ExPASy Swiss-Prot
Match: RL11_MEDSA (60S ribosomal protein L11 OS=Medicago sativa GN=RPL11 PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 4.097e-70
Identity = 125/174 (71.84%), Postives = 152/174 (87.36%), Query Frame = 2
Query:   29 MSNEDKLKNPMRQLKVDKLIINCCVGESGDRLTRAAKVLEQLTDKKPVYSKARYTVRSFGIRRNEKIAVHVTVRGFKANEILDRGLKVKEYELKKKNFSNTGCFGFGITEHIDLGLKYDPATGIFGMDFYVVLIRPGYRVARRKIKPGRIGNKHRVTKDDAIAWFQQKYEGIVM 550
            M++E KL NPMR++KV KL++N  VGESGDRLTRAAKVLEQL+ + PV+SKARYTVRSFGIRRNEKIA +VTVRG KA ++L+ GLKVKEYEL ++NFS+TGCFGFGI EHIDLG+KYDP+TGI+GMDF+VVL RPGYRV RR+    R+G +HRVTKDDA+ WFQ KYEG+++
Sbjct:    1 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKARVGIQHRVTKDDAMKWFQVKYEGVIL 174          
BLAST of CX301551 vs. ExPASy Swiss-Prot
Match: RL11_DROME (60S ribosomal protein L11 OS=Drosophila melanogaster GN=RpL11 PE=1 SV=2)

HSP 1 Score: 260.766 bits (665), Expect = 4.530e-69
Identity = 124/170 (72.94%), Postives = 147/170 (86.47%), Query Frame = 2
Query:   41 DKLKNPMRQLKVDKLIINCCVGESGDRLTRAAKVLEQLTDKKPVYSKARYTVRSFGIRRNEKIAVHVTVRGFKANEILDRGLKVKEYELKKKNFSNTGCFGFGITEHIDLGLKYDPATGIFGMDFYVVLIRPGYRVARRKIKPGRIGNKHRVTKDDAIAWFQQKYEGIVM 550
            D  KNPMR L + KL +N CVGESGDRLTRAAKVLEQLT ++PV+SKARYTVRSFGIRRNEKIAVH TVRG KA EIL+RGLKV+EYEL+++NFS+TG FGFGI EHIDLG+KYDP+ GI+G+DFYVVL RPGY V  RK K G +G +HR+TK+DA+ WFQQKY+GI++
Sbjct:   11 DPAKNPMRDLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRENFSSTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGYNVNHRKRKSGTVGFQHRLTKEDAMKWFQQKYDGIIL 180          
BLAST of CX301551 vs. ExPASy Swiss-Prot
Match: RL11_ORYSJ (60S ribosomal protein L11 OS=Oryza sativa subsp. japonica GN=RPL11 PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.318e-68
Identity = 123/174 (70.69%), Postives = 150/174 (86.21%), Query Frame = 2
Query:   29 MSNEDKLKNPMRQLKVDKLIINCCVGESGDRLTRAAKVLEQLTDKKPVYSKARYTVRSFGIRRNEKIAVHVTVRGFKANEILDRGLKVKEYELKKKNFSNTGCFGFGITEHIDLGLKYDPATGIFGMDFYVVLIRPGYRVARRKIKPGRIGNKHRVTKDDAIAWFQQKYEGIVM 550
            M++E K  NPMR++KV KL++N  VGESGDRLTRA+KVLEQL+ + PV+SKARYTVRSFGIRRNEKIA +VTVRG KA ++L+ GLKVKEYEL ++NFS TGCFGFGI EHIDLG+KYDP+TGI+GMDFYVVL R GYRVARR+    R+G +HRVTK+DA+ WFQ KYEG+++
Sbjct:    1 MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVIL 174          
BLAST of CX301551 vs. ExPASy Swiss-Prot
Match: RL11_ORYSI (60S ribosomal protein L11 OS=Oryza sativa subsp. indica GN=RPL11 PE=2 SV=2)

HSP 1 Score: 259.225 bits (661), Expect = 1.318e-68
Identity = 123/174 (70.69%), Postives = 150/174 (86.21%), Query Frame = 2
Query:   29 MSNEDKLKNPMRQLKVDKLIINCCVGESGDRLTRAAKVLEQLTDKKPVYSKARYTVRSFGIRRNEKIAVHVTVRGFKANEILDRGLKVKEYELKKKNFSNTGCFGFGITEHIDLGLKYDPATGIFGMDFYVVLIRPGYRVARRKIKPGRIGNKHRVTKDDAIAWFQQKYEGIVM 550
            M++E K  NPMR++KV KL++N  VGESGDRLTRA+KVLEQL+ + PV+SKARYTVRSFGIRRNEKIA +VTVRG KA ++L+ GLKVKEYEL ++NFS TGCFGFGI EHIDLG+KYDP+TGI+GMDFYVVL R GYRVARR+    R+G +HRVTK+DA+ WFQ KYEG+++
Sbjct:    1 MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVIL 174          
BLAST of CX301551 vs. ExPASy Swiss-Prot
Match: RL11_NEUCR (60S ribosomal protein L11 OS=Neurospora crassa GN=rpl-11 PE=3 SV=2)

HSP 1 Score: 256.529 bits (654), Expect = 8.543e-68
Identity = 119/173 (68.79%), Postives = 146/173 (84.39%), Query Frame = 2
Query:   29 MSNEDKLKNPMRQLKVDKLIINCCVGESGDRLTRAAKVLEQLTDKKPVYSKARYTVRSFGIRRNEKIAVHVTVRGFKANEILDRGLKVKEYELKKKNFSNTGCFGFGITEHIDLGLKYDPATGIFGMDFYVVLIRPGYRVARRKIKPGRIGNKHRVTKDDAIAWFQQKYEGIV 547
            MS E K +NPMR+L++ KL++N CVGESGDRLTRAAKVLEQL+ + PVYSKARYTVR+FGIRRNEKI+VHVTVRG KA EIL+RGLKVKEYEL+K+NFS TG FGFGI+EHIDLG+KYDP  GI+GMDFY  + RPG RV+RR+    R+G  HR+T+DD + WF+ +++ IV
Sbjct:    1 MSTEQKAQNPMRELRIQKLVLNICVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVRTFGIRRNEKISVHVTVRGPKAEEILERGLKVKEYELRKRNFSETGNFGFGISEHIDLGIKYDPGIGIYGMDFYCCMTRPGERVSRRRRAKSRVGATHRITRDDTVKWFKSRFDAIV 173          
BLAST of CX301551 vs. ExPASy Swiss-Prot
Match: RL11_ICTPU (60S ribosomal protein L11 OS=Ictalurus punctatus GN=rpl11 PE=2 SV=3)

HSP 1 Score: 255.758 bits (652), Expect = 1.457e-67
Identity = 120/170 (70.59%), Postives = 148/170 (87.06%), Query Frame = 2
Query:   41 DKLKNPMRQLKVDKLIINCCVGESGDRLTRAAKVLEQLTDKKPVYSKARYTVRSFGIRRNEKIAVHVTVRGFKANEILDRGLKVKEYELKKKNFSNTGCFGFGITEHIDLGLKYDPATGIFGMDFYVVLIRPGYRVARRKIKPGRIGNKHRVTKDDAIAWFQQKYEGIVM 550
            +K +NPMR+L++ KL +N CVGESGDRLTRAAKVLEQLT + PV+SKARYTVRSFGIRRNEKIAVH TVRG KA EIL++GLKV+EYEL+K NFS++G FGFGI EHIDLG+KYDP+ GI+G+DFYVVL RPG+ +A +K K GRIG KHR+ K +A+ WFQQKY+G+++
Sbjct:    6 EKKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRKRGRIGFKHRIRKREAMRWFQQKYDGVIL 175          
BLAST of CX301551 vs. ExPASy Swiss-Prot
Match: RL11_RAT (60S ribosomal protein L11 OS=Rattus norvegicus GN=Rpl11 PE=1 SV=2)

HSP 1 Score: 254.988 bits (650), Expect = 2.486e-67
Identity = 119/172 (69.19%), Postives = 150/172 (87.21%), Query Frame = 2
Query:   35 NEDKLKNPMRQLKVDKLIINCCVGESGDRLTRAAKVLEQLTDKKPVYSKARYTVRSFGIRRNEKIAVHVTVRGFKANEILDRGLKVKEYELKKKNFSNTGCFGFGITEHIDLGLKYDPATGIFGMDFYVVLIRPGYRVARRKIKPGRIGNKHRVTKDDAIAWFQQKYEGIVM 550
            ++ + +NPMR+L++ KL +N CVGESGDRLTRAAKVLEQLT + PV+SKARYTVRSFGIRRNEKIAVH TVRG KA EIL++GLKV+EYEL+K NFS+TG FGFGI EHIDLG+KYDP+ GI+G+DFYVVL RPG+ +A +K + G IG KHR++K++A+ WFQQKY+GI++
Sbjct:    4 DQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175          
BLAST of CX301551 vs. ExPASy Swiss-Prot
Match: RL11_MOUSE (60S ribosomal protein L11 OS=Mus musculus GN=Rpl11 PE=1 SV=4)

HSP 1 Score: 254.988 bits (650), Expect = 2.486e-67
Identity = 119/172 (69.19%), Postives = 150/172 (87.21%), Query Frame = 2
Query:   35 NEDKLKNPMRQLKVDKLIINCCVGESGDRLTRAAKVLEQLTDKKPVYSKARYTVRSFGIRRNEKIAVHVTVRGFKANEILDRGLKVKEYELKKKNFSNTGCFGFGITEHIDLGLKYDPATGIFGMDFYVVLIRPGYRVARRKIKPGRIGNKHRVTKDDAIAWFQQKYEGIVM 550
            ++ + +NPMR+L++ KL +N CVGESGDRLTRAAKVLEQLT + PV+SKARYTVRSFGIRRNEKIAVH TVRG KA EIL++GLKV+EYEL+K NFS+TG FGFGI EHIDLG+KYDP+ GI+G+DFYVVL RPG+ +A +K + G IG KHR++K++A+ WFQQKY+GI++
Sbjct:    4 DQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175          
The following BLAST results are available for this feature:
BLAST of CX301551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
RL111_ARATH1.839e-7072.4160S ribosomal protein L11-1 OS=Arabidopsis thalian... [more]
RL112_ARATH3.137e-7072.4160S ribosomal protein L11-2 OS=Arabidopsis thalian... [more]
RL11_MEDSA4.097e-7071.8460S ribosomal protein L11 OS=Medicago sativa GN=RP... [more]
RL11_DROME4.530e-6972.9460S ribosomal protein L11 OS=Drosophila melanogast... [more]
RL11_ORYSJ1.318e-6870.6960S ribosomal protein L11 OS=Oryza sativa subsp. j... [more]
RL11_ORYSI1.318e-6870.6960S ribosomal protein L11 OS=Oryza sativa subsp. i... [more]
RL11_NEUCR8.543e-6868.7960S ribosomal protein L11 OS=Neurospora crassa GN=... [more]
RL11_ICTPU1.457e-6770.5960S ribosomal protein L11 OS=Ictalurus punctatus G... [more]
RL11_RAT2.486e-6769.1960S ribosomal protein L11 OS=Rattus norvegicus GN=... [more]
RL11_MOUSE2.486e-6769.1960S ribosomal protein L11 OS=Mus musculus GN=Rpl11... [more]

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Properties
Property NameValue
Genbank descriptionC08011A04SK PhyRootSw1 Citrus sinensis cDNA clone C08011A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301551 ID=CX301551; Name=CX301551; organism=Citrus sinensis; type=EST; length=651bp
CGAATTCGGCACGAGGAACTCATTAAACATGTCAAACGAAGATAAACTGA
AGAACCCTATGCGCCAGTTAAAGGTTGATAAGTTGATTATCAACTGCTGC
GTCGGAGAGTCTGGTGATAGATTGACCCGTGCAGCTAAGGTTTTAGAACA
ATTAACCGATAAGAAGCCAGTGTATTCCAAGGCAAGATACACTGTTCGAT
CCTTCGGCATCAGAAGAAACGAGAAGATCGCCGTTCACGTCACTGTCCGA
GGTTTCAAGGCCAATGAAATCTTAGATCGTGGTTTAAAGGTCAAGGAATA
CGAGTTAAAGAAGAAGAACTTCTCCAACACTGGTTGCTTTGGCTTCGGTA
TCACCGAGCACATCGATTTAGGTCTTAAGTACGACCCTGCCACCGGTATT
TTCGGTATGGATTTCTATGTTGTCTTAATTCGCCCTGGATACCGAGTCGC
TAGAAGAAAGATCAAGCCCGGAAGAATCGGCAATAAGCACAGAGTCACCA
AGGATGATGCTATTGCTTGGTTCCAACAGAAATACGAAGGCATTGTTATG
TAAAATAGGGAACTCTTCAGTTATAAATCTTAACATGTAATCATCATGGC
GAACCCATCATANATACACTACAACACTCTGATGGTAAATTAAGAACATA
T
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