CN191506

Overview
NameCN191506
Unique NameCN191506
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length896
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN191506 vs. ExPASy Swiss-Prot
Match: TPP2_ARATH (Probable thylakoidal processing peptidase 2, chloroplastic OS=Arabidopsis thaliana GN=TPP2 PE=2 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 1.085e-78
Identity = 140/193 (72.54%), Postives = 166/193 (86.01%), Query Frame = -3
Query:  280 WLSKLLNVCSDDAKAAFTALTVSLLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPVVVPEGYVFVLGDNRNNSFDSHNWGPLPIENIVGRSVFRYWPPSRVSNMLDDPYAMKNAAVPIS 858
            W++KLLN+CS+DAKAAFTA+TVSLLF+S LAEP+SIPS SM PTLDVGDR++AEKVSYFF++PEVSDIVIF+APPIL E G+S  DVFIKRIVA+ GD VEV  GKLLVN   Q EDF+LEP+ YEM+P+ VPEGYVFVLGDNRN SFDSHNWGPLPI+NI+GRSVFRYWPPS+VS+++      +  AV +S
Sbjct:  175 WVNKLLNICSEDAKAAFTAVTVSLLFRSALAEPKSIPSTSMLPTLDVGDRVIAEKVSYFFRKPEVSDIVIFKAPPILVEHGYSCADVFIKRIVASEGDWVEVCDGKLLVNDTVQAEDFVLEPIDYEMEPMFVPEGYVFVLGDNRNKSFDSHNWGPLPIKNIIGRSVFRYWPPSKVSDIIHHEQVSQKRAVDVS 367          
BLAST of CN191506 vs. ExPASy Swiss-Prot
Match: TPP1_ARATH (Thylakoidal processing peptidase 1, chloroplastic OS=Arabidopsis thaliana GN=TPP1 PE=2 SV=2)

HSP 1 Score: 289.271 bits (739), Expect = 2.047e-77
Identity = 139/196 (70.92%), Postives = 167/196 (85.20%), Query Frame = -3
Query:  280 WLSKLLNVCSDDAKAAFTALTVSLLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPIL---QEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPVVVPEGYVFVLGDNRNNSFDSHNWGPLPIENIVGRSVFRYWPPSRVSNMLDDPYAMKNAAVPIS 858
            W++KLL+VCS+DAKAAFTA+TVS+LF+S LAEP+SIPS SM PTLD GDR++AEKVSYFF++PEVSDIVIF+APPIL    E G+SS DVFIKRIVA+ GD VEV  GKL VN + Q+EDF+LEP++YEM+P+ VP+GYVFVLGDNRN SFDSHNWGPLPIENIVGRSVFRYWPPS+VS+ +    A+    V +S
Sbjct:  145 WVNKLLSVCSEDAKAAFTAVTVSILFRSALAEPKSIPSTSMYPTLDKGDRVMAEKVSYFFRKPEVSDIVIFKAPPILLEYPEYGYSSNDVFIKRIVASEGDWVEVRDGKLFVNDIVQEEDFVLEPMSYEMEPMFVPKGYVFVLGDNRNKSFDSHNWGPLPIENIVGRSVFRYWPPSKVSDTIYHDQAITRGPVAVS 340          
BLAST of CN191506 vs. ExPASy Swiss-Prot
Match: PLSP1_ARATH (Chloroplast processing peptidase OS=Arabidopsis thaliana GN=PLSP1 PE=2 SV=2)

HSP 1 Score: 250.751 bits (639), Expect = 8.067e-66
Identity = 116/171 (67.84%), Postives = 143/171 (83.63%), Query Frame = -3
Query:  331 LNVCSDDAKAAFTALTVSLLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPVVVPEGYVFVLGDNRNNSFDSHNWGPLPIENIVGRSVFRYWPPSRVS 843
            L+  SDDA+  F A+ VSL F+ F+AEPR IPS SM PT DVGDR++AEKVSY+F++P  +DIVIF++PP+LQE+G++  DVFIKRIVA  GD VEVH GKL+VNGVA++E FILEP  YEM P+ VPE  VFV+GDNRNNS+DSH WGPLP++NI+GRSVFRYWPP+RVS
Sbjct:  108 LDFTSDDAQTVFVAIAVSLAFRYFIAEPRYIPSLSMYPTFDVGDRLVAEKVSYYFRKPCANDIVIFKSPPVLQEVGYTDADVFIKRIVAKEGDLVEVHNGKLMVNGVARNEKFILEPPGYEMTPIRVPENSVFVMGDNRNNSYDSHVWGPLPLKNIIGRSVFRYWPPNRVS 278          
BLAST of CN191506 vs. ExPASy Swiss-Prot
Match: LEP1_SYNY3 (Probable signal peptidase I-1 OS=Synechocystis sp. (strain PCC 6803) GN=lepB1 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.087e-41
Identity = 82/156 (52.56%), Postives = 110/156 (70.51%), Query Frame = -3
Query:  337 ALTVSLLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPVVVPEGYVFVLGDNRNNSFDSHNWGPLPIENIVGRSVFRYWPPSR 804
            AL ++LL + F+AEPR IPS SM PTL+ GDR++ EKVSY F  P+V DI++F  P +LQ  G+  G  FIKR++A  G  VEV+ G +  +G    E++ILEP  Y +  V VP+G VFV+GDNRNNS DSH WG LP +NI+G ++FR++P SR
Sbjct:   23 ALVLALLLRFFVAEPRYIPSDSMLPTLEQGDRLVVEKVSYHFHPPQVGDIIVFHPPELLQVQGYDLGQAFIKRVIALPGQTVEVNNGIVYRDGQPLQEEYILEPPQYNLPAVRVPDGQVFVMGDNRNNSNDSHVWGFLPQQNIIGHALFRFFPASR 178          
BLAST of CN191506 vs. ExPASy Swiss-Prot
Match: LEP2_SYNY3 (Probable signal peptidase I-2 OS=Synechocystis sp. (strain PCC 6803) GN=lepB2 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.028e-36
Identity = 78/168 (46.43%), Postives = 106/168 (63.10%), Query Frame = -3
Query:  316 KAAFTALTVSLLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPVVVPEGYVFVLGDNRNNSFDSHNWGPLPIENIVGRSVFRYWPPSRVSNMLDD 819
            K   TA+ +++  ++F+AE R IPS+SM PTL + DR++ EK+SY  + PE  +IV+F     L+   F   D FIKRI+   GD V V  G + VNG   DE++I  P AYE  PV VP+    VLGDNRNNS+DSH WG +P E ++GR+  R+WP  RV  + DD
Sbjct:   26 KTMVTAVILAIGIRTFVAEARYIPSSSMEPTLQINDRLIIEKISYRLRDPERGEIVVFNPTDALKAKNFH--DAFIKRIIGLPGDEVRVSQGNVYVNGKMLDENYIAAPPAYEYGPVKVPDDQYLVLGDNRNNSYDSHYWGFVPREKLLGRAFVRFWPVPRVGLLTDD 191          
BLAST of CN191506 vs. ExPASy Swiss-Prot
Match: LEP_PHOLA (Signal peptidase I OS=Phormidium laminosum GN=lepB PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 5.100e-36
Identity = 71/164 (43.29%), Postives = 107/164 (65.24%), Query Frame = -3
Query:  313 ALTVSLLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPVVVPEGYVFVLGDNRNNSFDSHNWGPLPIENIVGRSVFRYWPPSRVSNMLDDP 804
            ++ ++L  ++F+AE R IPS SM PTL+V DR++ EK+SY F  P   DI++F     L++   S  + FIKR++   G+ V+V GG++L+NG   +E++I  P  Y+  P  VP     VLGDNRNNS+DSH WG +P +NI+GR+V R+WP +R+  +   P
Sbjct:   38 SVVLALGIRTFVAEARYIPSESMLPTLEVNDRLIVEKISYHFNPPRRGDIIVFHPTEALKQQNPSLNEAFIKRVIGLPGETVQVTGGRVLINGQPLEENYIQSPPDYQWGPEKVPADSFLVLGDNRNNSYDSHFWGYVPRQNIIGRAVVRFWPVNRLGELGPPP 201          
BLAST of CN191506 vs. ExPASy Swiss-Prot
Match: LEP_MYCTU (Probable signal peptidase I OS=Mycobacterium tuberculosis GN=lepB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.947e-19
Identity = 71/213 (33.33%), Postives = 98/213 (46.01%), Query Frame = -3
Query:  337 AKAAFTALTVSLLFKSFLAEPRSIPSASMNPTLD-----VGDRILAEKVSYFFKRPEVSDIVIFRAPP---------------------ILQEIGFSSGDV--FIKRIVATAGDCVEVHGGK-LLVNGVAQDEDFI------LEPLAY-----EMDPVVVPEGYVFVLGDNRNNSFDSHNWGPL-----------PIENIVGRSVFRYWPPSR 822
            A  A  A+ +  +  +F+A P  IPS SM PTL      VGDRI+ +K+SY F  P+  D+++FR PP                      L  IGF   D    +KR++A  G  V+      L VNG    E ++       +P  Y     E  PV VP G V+V+GDNR +S DS    PL           P+ N++G++    WPPSR
Sbjct:   69 AVLAVIAVVLYYVMLTFVARPYLIPSESMEPTLHGCSTCVGDRIMVDKLSYRFGSPQPGDVIVFRGPPSWNVGYKSIRSHNVAVRWVQNALSFIGFVPPDENDLVKRVIAVGGQTVQCRSDTGLTVNGRPLKEPYLDPATMMADPSIYPCLGSEFGPVTVPPGRVWVMGDNRTHSADSRAHCPLLCTDDPLPGTVPVANVIGKARLIVWPPSR 281          
BLAST of CN191506 vs. ExPASy Swiss-Prot
Match: LEP_MYCLE (Probable signal peptidase I OS=Mycobacterium leprae GN=lepB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.665e-19
Identity = 74/243 (30.45%), Postives = 106/243 (43.62%), Query Frame = -3
Query:  337 GVSLQ*KTSGSWLSKLLNVCSDDAKAAFTALTVSLLFKSFLAEPRSIPSASMNPTLD-----VGDRILAEKVSYFFKRPEVSDIVIFRAPP---------------------ILQEIGFSSGDV--FIKRIVATAGDCVEVHGGK-LLVNG----------VAQDEDFILEP-LAYEMDPVVVPEGYVFVLGDNRNNSFDSH------------------NWGPLPIENIVGRSVFRYWPPSR 891
            GVS   K S  W   +L         A  A+ +  +  +F+A P  IPS SM PTL      VGDRI+ +K++Y F  P+  D+++F+ PP                      L  +GF   D    +KR++A  G  V+      L VNG          V  + D    P L  E  PV VP+G ++V+GDNR +S DS                   N G +P+ N++G++    WPPSR
Sbjct:   43 GVSEPKKRSALWEFAIL---------AVIAIGLYYVMLTFVARPYLIPSESMEPTLHGCSGCVGDRIMVDKITYRFSSPQPGDVIVFKGPPSWNTMYKSIRSNNIVLRSVQNALSFVGFVPPDENDLVKRVIAVGGQTVQCRSDTGLTVNGKPLKEPYLRPVTMNADLSFSPCLGSEFGPVTVPQGRLWVMGDNRIHSADSRYHCNSTDVVNGLSCTGDPNSGTVPVSNVIGKARVVVWPPSR 276          
BLAST of CN191506 vs. ExPASy Swiss-Prot
Match: LEP_PSEFL (Signal peptidase I OS=Pseudomonas fluorescens GN=lepB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.060e-17
Identity = 71/219 (32.42%), Postives = 102/219 (46.58%), Query Frame = -3
Query:  325 KAAFTALTVSLLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEV------------SDIVIFRAPPILQEIGFSSGDV-FIKRIVATAGDCVEVHGGK-LLVNGVAQDEDFI----------------LEPLAYEMDPVV------------VPEGYVFVLGDNRNNSFDSHNW----------GPLPIENIVGR--SVFRYWPPSRVSNM 819
            K+ F  L + L+ +SFL EP  IPS SM PTLDVGD IL  K SY  + P +             D+++FR P        S  +V +IKR+V   GD V     K L +NG +  E  +                L  + +E+   +            VP G+ F++GDNR+NS DS  W          G +P ENIVG+  +V+  WP  ++S++
Sbjct:   64 KSFFPVLFIVLVLRSFLVEPFQIPSGSMKPTLDVGDFILVNKFSYGIRLPVIDKKVIEVGDPQRGDVMVFRYP--------SDPNVNYIKRVVGLPGDVVRYTSDKRLFINGESVAEKLLGAEPNTLGSAELYQEKLGAVEHEIRKEMSRYRAMPDGQWKVPAGHYFMMGDNRDNSNDSRYWDDPNIPKDLLGMVPDENIVGKAFAVWMSWPEPKLSHL 274          
BLAST of CN191506 vs. ExPASy Swiss-Prot
Match: LEP_PSEAE (Signal peptidase I OS=Pseudomonas aeruginosa GN=lepB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.181e-16
Identity = 70/219 (31.96%), Postives = 103/219 (47.03%), Query Frame = -3
Query:  325 KAAFTALTVSLLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFK------------RPEVSDIVIFRAPPILQEIGFSSGDV-FIKRIVATAGDCVEVHGGK-LLVNG------------------------VAQDEDFILEPLA-YEMDP---VVVPEGYVFVLGDNRNNSFDSHNW----------GPLPIENIVGR--SVFRYWPPSRVSNM 819
            K+ F  L + L+ +SFL EP  IPS SM PTL+VGD IL  K +Y  +             P+  D+++FR P        S  ++ +IKR+V   GD V     K L VNG                        + Q E  I + ++ Y ++P     +P G+ F++GDNR+NS DS  W          G +P  NIVG+  +V+  WP  ++SN+
Sbjct:   64 KSFFPVLFIVLVLRSFLVEPFQIPSGSMKPTLEVGDFILVNKFAYGIRLPVLDTKVIPIGDPQRGDVMVFRYP--------SEPNINYIKRVVGLPGDTVRYTKEKRLYVNGELVAEKLVGEEPGTLGSVTLYQEKLGQAEHLIRKEMSRYRIEPDRQWTIPAGHYFMMGDNRDNSNDSRYWNDPKIPKDLLGMVPDRNIVGKAFAVWMSWPDPKMSNL 274          
The following BLAST results are available for this feature:
BLAST of CN191506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
TPP2_ARATH1.085e-7872.54Probable thylakoidal processing peptidase 2, chlor... [more]
TPP1_ARATH2.047e-7770.92Thylakoidal processing peptidase 1, chloroplastic ... [more]
PLSP1_ARATH8.067e-6667.84Chloroplast processing peptidase OS=Arabidopsis th... [more]
LEP1_SYNY33.087e-4152.56Probable signal peptidase I-1 OS=Synechocystis sp.... [more]
LEP2_SYNY31.028e-3646.43Probable signal peptidase I-2 OS=Synechocystis sp.... [more]
LEP_PHOLA5.100e-3643.29Signal peptidase I OS=Phormidium laminosum GN=lepB... [more]
LEP_MYCTU1.947e-1933.33Probable signal peptidase I OS=Mycobacterium tuber... [more]
LEP_MYCLE5.665e-1930.45Probable signal peptidase I OS=Mycobacterium lepra... [more]
LEP_PSEFL4.060e-1732.42Signal peptidase I OS=Pseudomonas fluorescens GN=l... [more]
LEP_PSEAE1.181e-1631.96Signal peptidase I OS=Pseudomonas aeruginosa GN=le... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0005F03_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191506 ID=CN191506; Name=CN191506; organism=Citrus sinensis; type=EST; length=896bp
TTTTTTTCTTTTTTCTTTTTCTCCCACTCCCTTGCCAAAGAATATCAGAA
TAAATGATTCCATAAAAAATGGCTGTCATCGGCCATGATTGGGCCGTGCA
GAAATATACACACTGATTGAAGAGACGAACCATTAATTGAAACGATGTCC
AGGATATGCATGAACTTGACAAGGCAAAATATTGACAGCCGCTCGTTAAT
GAGCTAAAAGTGAGGAAAATAATTTTAAAAATTGTTAAAGTTTCATCCTT
TTCCACTGCACCCAGGTAGAAACATGTCACGAGATTGGCACAGCAGCATT
CTTCATTGCATAAGGATCATCTAACATGTTGGATACTCTGGACGGAGGCC
AATAACGAAACACTGACCTACCGACGATGTTCTCAATAGGAAGCGGACCC
CAGTTATGAGAATCAAAGCTGTTATTACGATTGTCTCCCAATACAAAGAC
ATAACCTTCAGGCACAACCACTGGGTCCATTTCATAAGCTAGTGGCTCCA
GAATGAAATCTTCATCTTGAGCAACACCATTTACAAGCAGTTTCCCACCA
TGAACTTCGACACAATCTCCAGCCGTTGCCACTATCCTTTTTATGAATAC
ATCACCAGAACTGAAACCAATTTCCTGCAAGATCGGAGGTGCCCTAAAGA
TCACTATATCAGATACCTCAGGCCTTTTGAAAAAGTATGAAACCTTCTCT
GCCAAAATCCGGTCACCAACATCCAGGGTAGGGTTCATAGAAGCCGATGG
AATGGATCTGGGCTCAGCCAAGAACGACTTGAACAACAAACTAACAGTCA
AAGCCGTAAAGGCGGCCTTGGCATCATCCGAACATACATTCAACAACTTC
GATAACCAACTTCCGCTCGTTTTTCACTGCAAGCTTACACCATTCA
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