CN191409

Overview
NameCN191409
Unique NameCN191409
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN191409 vs. ExPASy Swiss-Prot
Match: GILT_HUMAN (Gamma-interferon-inducible lysosomal thiol reductase OS=Homo sapiens GN=IFI30 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.848e-19
Identity = 61/172 (35.47%), Postives = 89/172 (51.74%), Query Frame = 2
Query:  188 VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIR--ANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLE--LDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVEGQPLYEDYENFISYVCK 691
            V + LYYE+LC     F+I  L   +  + ++ I+++ L P+GNA+ +  +    F CQHG  EC  N VEAC +D   ++   F  I C+E   +E        C       L P  I++C     G QL    A  T++L PPH+YVPWV V G+PL ED    ++ VC+
Sbjct:   73 VNVTLYYEALCGGCRAFLIRELFPTW--LLVMEILNVTLVPYGNAQEQNVSGRWEFKCQHGEEECKFNKVEACVLDEL-DMELAFLTIVCMEE--FEDMERSLPLCLQLYAPGLSPDTIMECAMGDRGMQLMHANAQRTDALQPPHEYVPWVTVNGKPL-EDQTQLLTLVCQ 238          
BLAST of CN191409 vs. ExPASy Swiss-Prot
Match: YVRI_CAEEL (GILT-like protein F37H8.5 OS=Caenorhabditis elegans GN=F37H8.5 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.938e-17
Identity = 57/172 (33.14%), Postives = 92/172 (53.49%), Query Frame = 2
Query:  179 NSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCI-ESLVYEHKYSQ-WETCFDKLELD---PKPIVDCYTSGYGTQLELKYAAETNSLVP-PHQYVPWVVVEGQPL--YEDYEN 670
            N K+ + +  E+LCP   NF+   L  I    +  + V++ L P+GNAK+   + T  CQHG  EC +N  E C IDS  +     P + CI ESL  + +++   + CF+KL++     +    C  S  G  L+ K AA T ++ P  H++VPWV++ G  L  ++ ++N
Sbjct:   73 NQKINITVLIEALCPDCQNFLTKQLYPIVFK-NFANYVNIELVPFGNAKV-LEDGTIKCQHGEEECSINKFEGCFIDSMQD-QSPLPTLSCIEESLQKKVEFADAVQQCFEKLQIGGDIQRLTQSCLVSKLGADLQNKAAAATANVWPEQHKFVPWVIINGVSLTSFQGFQN 241          
BLAST of CN191409 vs. ExPASy Swiss-Prot
Match: YKJ2_CAEEL (GILT-like protein C02D5.2 OS=Caenorhabditis elegans GN=C02D5.2 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.566e-16
Identity = 53/193 (27.46%), Postives = 94/193 (48.70%), Query Frame = 2
Query:  131 FLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFD--CQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDP---KPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVEGQPLYEDYENFISYVCKA 694
            F+     A  T    V + VKL +Y E+ CP ++ F    L K ++ +  L+ ++L++ P+G A+     + F+  CQHGP+EC +N +  C ID +   +++ P + C++      KYS  E      E  P   + + +C +   G +L      +T SL P   ++PW+V+ G    +   +    VC+A
Sbjct:  120 FIEYEPKAGPTIKEPVENIVKLDVYMEAQCPDTSRFFRQQLKKAWDILGRLNRIELNVIPFGKARCTEKGNDFECQCQHGPTECQINQLMNCVIDRFGFPHRYLPGVLCMQG-----KYSLDEAMKCVTENYPSEYERMRECASGTRGRRLLALSGQKTASLTPAIDFIPWIVINGSRNSDALYDLTQNVCEA 307          
The following BLAST results are available for this feature:
BLAST of CN191409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
GILT_HUMAN2.848e-1935.47Gamma-interferon-inducible lysosomal thiol reducta... [more]
YVRI_CAEEL5.938e-1733.14GILT-like protein F37H8.5 OS=Caenorhabditis elegan... [more]
YKJ2_CAEEL6.566e-1627.46GILT-like protein C02D5.2 OS=Caenorhabditis elegan... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0005C07_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191409 ID=CN191409; Name=CN191409; organism=Citrus sinensis; type=EST; length=696bp
GAGGCTCACTTTTTCACTTAAGAAGAAAGGGGAAAAAAAATAGCCCTAAT
TTACGGATTCATCTATGGCTTCTTCTTCTTCTTCCTCAAAAAAAGCCTTA
TCTCTTGTCTTTTACATTACCTTGTTCTGCTTCTTGTCTGGCTCTGTTTC
AGCTTCTAGAACTTCACCTTCAGATGTTAACAGTAAAGTCAAGTTAGGTC
TGTACTACGAGTCTTTGTGTCCATACAGTGCCAATTTCATTATCAATTAC
TTGGTTAAAATCTTTGAAGATGTTGATCTGTTATCCATCGTTGATCTCCA
TCTTTCTCCCTGGGGGAACGCCAAAATCAGAGCCAACAACAGCACCTTTG
ATTGCCAGCATGGCCCTTCTGAATGCTTGCTGAACACTGTGGAAGCTTGT
GCGATTGATAGTTGGCCTGAATTGAACAAGCATTTCCCGTTTATCTACTG
CATTGAGAGTTTAGTGTACGAGCATAAGTATTCTCAGTGGGAAACATGCT
TTGATAAATTGGAACTGGATCCGAAACCAATTGTTGATTGCTATACCAGT
GGATATGGAACACAGCTTGAGTTAAAATATGCAGCTGAGACAAATTCCCT
TGTGCCTCCTCATCAATATGTGCCTTGGGTTGTTGTGGAAGGACAGCCAC
TGTATGAGGACTACGAAAATTTTATAAGCTATGTCTGCAAGGCTTA
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