DY257380

Overview
NameDY257380
Unique NameDY257380
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257380 vs. ExPASy Swiss-Prot
Match: PSB2A_ARATH (Proteasome subunit beta type-2-A OS=Arabidopsis thaliana GN=PBD1 PE=1 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 1.179e-76
Identity = 142/171 (83.04%), Postives = 156/171 (91.23%), Query Frame = 1
Query:  115 NK*KEEKIMVLDSHKLIDASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRNFFFLGNILLAGYEKETGPSLYYIDYIATLHKVDKGAFGYGSYFSLSMMDRHFHSGMSVEEAVNLVDKCILEIRSRLVVAPPNFVIKIDDKDGAREYAWRESVKD 627
            +K  E+KIMVLDSHKL+ ASGEPGDRVQFTE++QKNVSLY+FRNGIPLTTAAAANFTRGELATALR   +  NIL+AGY+ E+G SLYYIDYIATLHKVDKGAFGYGSYFSLS MDRH+ S MSVEEA+ LVDKCILEIRSRLVVAPPNFVIKI DKDGAR+YAWR+SVKD
Sbjct:   28 HKNNEDKIMVLDSHKLVAASGEPGDRVQFTEYVQKNVSLYKFRNGIPLTTAAAANFTRGELATALRKNPYSVNILMAGYDDESGASLYYIDYIATLHKVDKGAFGYGSYFSLSTMDRHYRSDMSVEEAIELVDKCILEIRSRLVVAPPNFVIKIVDKDGARDYAWRQSVKD 198          
BLAST of DY257380 vs. ExPASy Swiss-Prot
Match: PSB2B_ARATH (Proteasome subunit beta type-2-B OS=Arabidopsis thaliana GN=PBD2 PE=1 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 2.223e-75
Identity = 140/171 (81.87%), Postives = 152/171 (88.89%), Query Frame = 1
Query:  115 NK*KEEKIMVLDSHKLIDASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRNFFFLGNILLAGYEKETGPSLYYIDYIATLHKVDKGAFGYGSYFSLSMMDRHFHSGMSVEEAVNLVDKCILEIRSRLVVAPPNFVIKIDDKDGAREYAWRESVKD 627
            +K KE+KIM LDSHKL+ ASGEPGDRVQFTE++QKNVSLYQFRNGIPL+TAAAANFTRGELATALR   +  NIL+AGY+KE G SLYYIDYIATLHKVDKGAFGYGSYFSLS MDRH+ S MSVEEA+ LVDKCILEIRSRLV+APPNFVIKI DKDGAREY WR S  D
Sbjct:   28 HKNKEDKIMTLDSHKLVAASGEPGDRVQFTEYVQKNVSLYQFRNGIPLSTAAAANFTRGELATALRKNPYSVNILMAGYDKEAGASLYYIDYIATLHKVDKGAFGYGSYFSLSTMDRHYRSDMSVEEAIELVDKCILEIRSRLVIAPPNFVIKIVDKDGAREYGWRISTAD 198          
BLAST of DY257380 vs. ExPASy Swiss-Prot
Match: PSB2_ORYSJ (Proteasome subunit beta type-2 OS=Oryza sativa subsp. japonica GN=PBD1 PE=2 SV=2)

HSP 1 Score: 248.44 bits (633), Expect = 3.557e-65
Identity = 125/173 (72.25%), Postives = 145/173 (83.82%), Query Frame = 1
Query:  115 NK*KEEKIMVLDSHKLIDASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRNFFFLGNILLAGYEKETGPSLYYIDYIATLHKVDKGAFGYGSYFSLSMMDRHFHSGMSVEEAVNLVDKCILEIRSRLVVAPPNFVIKIDDKDGAREYAWRESVKDTP 633
            +K  E+K+MVLDSHKL+ ASGEPGDRVQFTEFIQKN+ LYQFRN IPL+TAA ANFTRGELATALR   +  N+LLAGY+ + G SLYYIDYIAT HK++KGAFGYGSYF LS+MD+ +   MSVEEAV+LVDKCI EIR RLVVAP NF+IKI DK+GAREYA R +  D+P
Sbjct:   28 HKTDEDKVMVLDSHKLMGASGEPGDRVQFTEFIQKNLHLYQFRNNIPLSTAATANFTRGELATALRKNPYYVNVLLAGYDSDVGASLYYIDYIATFHKIEKGAFGYGSYFCLSLMDKLYRPDMSVEEAVDLVDKCIKEIRLRLVVAPQNFIIKIVDKEGAREYA-RRAYTDSP 199          
BLAST of DY257380 vs. ExPASy Swiss-Prot
Match: PSB2_DICDI (Proteasome subunit beta type-2 OS=Dictyostelium discoideum GN=psmB2 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 9.129e-37
Identity = 73/160 (45.62%), Postives = 111/160 (69.38%), Query Frame = 1
Query:  127 EEKIMVLDSHKLIDASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRNFFFLGNILLAGYEKET---GPSLYYIDYIATLHKVDKGAFGYGSYFSLSMMDRHFHSGMSVEEAVNLVDKCILEIRSRLVVAPPNFVIKIDDKDGAR 597
            E+KI+ +D HKL+ ++GE GDRVQFTE+I KN+ LY  RN  P++T AAANF R ELAT++R+  +  N++LAGY+KE    G SLYY+DY+ +L K++ G  GY SYF L ++DRH    +S+E+ +NL+  C  E+++R +V+   + +K    +G +
Sbjct:   32 EDKILEIDGHKLLLSAGEAGDRVQFTEYISKNIKLYSLRNSYPMSTPAAANFIRNELATSIRSHPYSINLILAGYDKEVEDGGTSLYYMDYLGSLQKLNFGCHGYASYFLLGLLDRHHKCDLSLEDGINLMHLCTTELKTRFLVS-GKYTLKFVSSEGIK 190          
BLAST of DY257380 vs. ExPASy Swiss-Prot
Match: PSB2_RAT (Proteasome subunit beta type-2 OS=Rattus norvegicus GN=Psmb2 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.044e-32
Identity = 71/155 (45.81%), Postives = 103/155 (66.45%), Query Frame = 1
Query:  130 EKIMVLDSHKLIDASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRNFF-FLGNILLAGYEKETGPSLYYIDYIATLHKVDKGAFGYGSYFSLSMMDRHFHSGMSVEEAVNLVDKCILEIRSRLVVAPPNFVIKIDDKDG 591
            +K+  +    L+   GE GD VQF E+IQKNV LY+ RNG  L+  AAANFTR  LA  LR+   +  N+LLAGY++  GP+LYY+DY+A L K    A GYG++ +LS++DR++   +S E AV L+ KC+ E++ R ++  P F +++ DKDG
Sbjct:   33 DKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILNLPTFSVRVIDKDG 187          
BLAST of DY257380 vs. ExPASy Swiss-Prot
Match: PSB2_MOUSE (Proteasome subunit beta type-2 OS=Mus musculus GN=Psmb2 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.044e-32
Identity = 71/155 (45.81%), Postives = 103/155 (66.45%), Query Frame = 1
Query:  130 EKIMVLDSHKLIDASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRNFF-FLGNILLAGYEKETGPSLYYIDYIATLHKVDKGAFGYGSYFSLSMMDRHFHSGMSVEEAVNLVDKCILEIRSRLVVAPPNFVIKIDDKDG 591
            +K+  +    L+   GE GD VQF E+IQKNV LY+ RNG  L+  AAANFTR  LA  LR+   +  N+LLAGY++  GP+LYY+DY+A L K    A GYG++ +LS++DR++   +S E AV L+ KC+ E++ R ++  P F +++ DKDG
Sbjct:   33 DKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILNLPTFSVRVIDKDG 187          
BLAST of DY257380 vs. ExPASy Swiss-Prot
Match: PSB2_HUMAN (Proteasome subunit beta type-2 OS=Homo sapiens GN=PSMB2 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.327e-32
Identity = 71/158 (44.94%), Postives = 104/158 (65.82%), Query Frame = 1
Query:  130 EKIMVLDSHKLIDASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRNFF-FLGNILLAGYEKETGPSLYYIDYIATLHKVDKGAFGYGSYFSLSMMDRHFHSGMSVEEAVNLVDKCILEIRSRLVVAPPNFVIKIDDKDGARE 600
            +K+  +    L+   GE GD VQF E+IQKNV LY+ RNG  L+  AAANFTR  LA  LR+   +  N+LLAGY++  GP+LYY+DY+A L K    A GYG++ +LS++DR++   +S E AV L+ KC+ E++ R ++  P F ++I DK+G  +
Sbjct:   33 DKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILNLPTFSVRIIDKNGIHD 190          
BLAST of DY257380 vs. ExPASy Swiss-Prot
Match: PSB2_BOVIN (Proteasome subunit beta type-2 OS=Bos taurus GN=PSMB2 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.770e-32
Identity = 70/158 (44.30%), Postives = 105/158 (66.46%), Query Frame = 1
Query:  130 EKIMVLDSHKLIDASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRNFF-FLGNILLAGYEKETGPSLYYIDYIATLHKVDKGAFGYGSYFSLSMMDRHFHSGMSVEEAVNLVDKCILEIRSRLVVAPPNFVIKIDDKDGARE 600
            +K+  +    L+   GE GD VQF E+IQKNV LY+ RNG  L+  AAANFTR  LA  LR+   +  N+LLAGY++  GP+LYY+DY+A L K    A GYG++ +LS++DR++   +S E+AV L+ KC+ E++ R ++  P F ++I D++G  +
Sbjct:   33 DKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADYLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISREKAVELLRKCLEELQKRFILNLPTFSVRIIDRNGIHD 190          
BLAST of DY257380 vs. ExPASy Swiss-Prot
Match: PSB2_SCHPO (Probable proteasome subunit beta type-2 OS=Schizosaccharomyces pombe GN=SPAC31A2.04c PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.195e-28
Identity = 65/160 (40.62%), Postives = 102/160 (63.75%), Query Frame = 1
Query:  127 EEKIMVLDSHKLIDASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRNFF-FLGNILLAGYEKETG-PSLYYIDYIATLHKVDKGAFGYGSYFSLSMMDRHFHSGMSVEEAVNLVDKCILEIRSRLVVAPPNFVIKIDDKDGARE 600
            ++K  +L+SH L+   GE GD   F E+I  N+SLY  R+ + L+  A A+FTR +LAT+LR+   +  NILLAGYE   G P L+++DY+AT  +V     GY S++ LS+ DR++   ++++EAV ++  C  E++ R+ +    F+ K+ DKDG RE
Sbjct:   32 DDKSQILNSHNLMLYCGEAGDTTNFAEYIAANISLYTLRHNLNLSPEATASFTRKQLATSLRSRKPYQVNILLAGYETNLGKPELFWLDYLATCVRVPYACQGYSSFYCLSIFDRYYKPDLTIDEAVRIMKLCFDELKKRMPIDFKGFICKVVDKDGIRE 191          
BLAST of DY257380 vs. ExPASy Swiss-Prot
Match: PSB2_NEUCR (Probable proteasome subunit beta type-2 OS=Neurospora crassa GN=15E6.60 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.541e-28
Identity = 67/160 (41.88%), Postives = 98/160 (61.25%), Query Frame = 1
Query:  118 K*KEEKIMVLDSHKLIDASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRNFF-FLGNILLAGYEKET-GPSLYYIDYIATLHKVDKGAFGYGSYFSLSMMDRHFHSGMSVEEAVNLVDKCILEIRSRLVVAPPNFVIKIDDKDG 591
            K  ++K   L+ H L+  SGE GD VQF E+ Q N  LY  RNG  L+ +A ANF RGELAT+LR+   +  N+LL G +  T  PSLY++DY+A+L KV   A GY  Y+ LS++D+H H  +++ + + L++ C  E++ RL +      +K   KDG
Sbjct:   29 KASDDKTRSLNKHTLMAFSGEAGDTVQFAEYTQANAQLYSMRNGTDLSPSALANFVRGELATSLRSRKPYNVNLLLGGVDPITHKPSLYWLDYLASLAKVPYAAHGYAQYYCLSILDKHHHPDITLHQGIKLLNLCTDELKRRLPIDFKGMTVKAVTKDG 188          
The following BLAST results are available for this feature:
BLAST of DY257380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PSB2A_ARATH1.179e-7683.04Proteasome subunit beta type-2-A OS=Arabidopsis th... [more]
PSB2B_ARATH2.223e-7581.87Proteasome subunit beta type-2-B OS=Arabidopsis th... [more]
PSB2_ORYSJ3.557e-6572.25Proteasome subunit beta type-2 OS=Oryza sativa sub... [more]
PSB2_DICDI9.129e-3745.63Proteasome subunit beta type-2 OS=Dictyostelium di... [more]
PSB2_RAT1.044e-3245.81Proteasome subunit beta type-2 OS=Rattus norvegicu... [more]
PSB2_MOUSE1.044e-3245.81Proteasome subunit beta type-2 OS=Mus musculus GN=... [more]
PSB2_HUMAN2.327e-3244.94Proteasome subunit beta type-2 OS=Homo sapiens GN=... [more]
PSB2_BOVIN6.770e-3244.30Proteasome subunit beta type-2 OS=Bos taurus GN=PS... [more]
PSB2_SCHPO1.195e-2840.63Probable proteasome subunit beta type-2 OS=Schizos... [more]
PSB2_NEUCR4.541e-2841.88Probable proteasome subunit beta type-2 OS=Neurosp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAK2BB10FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257380 ID=DY257380; Name=DY257380; organism=Citrus sinensis; type=EST; length=828bp
CTTTATGCTGATCTTTTAATGGATGAATTGGGACAGTTATGATGATGGGA
ATTTGGTACATACAGGATTGTTATATATTAGAAATACACTCTTGATTTGA
TTTAAACTTGGGATAATAAATAGAAAGAGGAGAAGATCATGGTCCTCGAC
TCTCACAAACTCATCGACGCCAGTGGAGAACCCGGTGACCGTGTTCAATT
TACGGAGTTCATTCAAAAGAATGTGTCGTTGTATCAATTTCGTAACGGAA
TTCCATTGACTACTGCTGCGGCGGCGAACTTTACCCGAGGAGAGCTTGCT
ACTGCTCTGAGAAATTTTTTTTTTTTGGGTAACATCCTTCTAGCTGGGTA
TGAGAAGGAGACAGGACCATCTCTTTACTACATTGACTACATTGCAACCC
TTCACAAAGTTGATAAGGGAGCTTTTGGTTATGGATCCTATTTTTCGCTC
TCCATGATGGACCGACATTTCCACAGTGGCATGTCAGTTGAAGAAGCTGT
AAACTTGGTTGATAAGTGCATACTGGAGATTCGATCCAGGCTGGTGGTGG
CACCACCAAACTTTGTCATCAAGATTGACGATAAAGATGGAGCACGGGAG
TATGCTTGGCGTGAATCTGTCAAGGACACCCCCTGTTTCTTCAGCATGAG
GGGGTCTGAATCTGAATCGGACTAATTGGTATAAAGTTATTATTTGACGG
CTAAAAACTGTTTTGGTTTGGATTTTTTCTTATGTTTAAATAAGTTCATA
AGTAAAAAAAATTTTAAACTTCCTTATCTGGCATTTAAATCTGGAAATCA
TTAAAATTGTTCGTGAGGTGATTGGTTT
back to top