EG358259

Overview
NameEG358259
Unique NameEG358259
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length253
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG358259 vs. ExPASy Swiss-Prot
Match: VDAC1_ARATH (Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=At3g01280 PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 7.620e-16
Identity = 40/59 (67.80%), Postives = 48/59 (81.36%), Query Frame = 2
Query:   77 MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQ 253
            M KGPGL+ +IGKKA+DLL KD+N+DQK SI+T+S AGVA+TST  KKG L  GDVA Q
Sbjct:    1 MVKGPGLYTEIGKKARDLLYKDHNSDQKFSITTFSPAGVAITSTGTKKGDLLLGDVAFQ 59          
BLAST of EG358259 vs. ExPASy Swiss-Prot
Match: VDAC_PEA (Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.425e-15
Identity = 38/59 (64.41%), Postives = 46/59 (77.97%), Query Frame = 2
Query:   77 MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQ 253
            M KGPGL+ DIGKKA+DLL KDY++D+K +ISTYS  GVA+TS+  KKG L  GDV  Q
Sbjct:    1 MVKGPGLYTDIGKKARDLLYKDYHSDKKFTISTYSPTGVAITSSGTKKGELFLGDVNTQ 59          
BLAST of EG358259 vs. ExPASy Swiss-Prot
Match: VDAC2_ARATH (Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=HSR2 PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 8.425e-15
Identity = 36/59 (61.02%), Postives = 44/59 (74.58%), Query Frame = 2
Query:   77 MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQ 253
            M KGPGL+ +IGKKA+DLL +DY  DQK S++TYS  GVA+T+T   KG L  GDVA Q
Sbjct:    1 MVKGPGLYTEIGKKARDLLYRDYQGDQKFSVTTYSSTGVAITTTGTNKGSLFLGDVATQ 59          
BLAST of EG358259 vs. ExPASy Swiss-Prot
Match: VDAC1_SOLTU (Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.623e-13
Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = 2
Query:   77 MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQ 253
            M KGPGL+ +IGKKA+DLL KDY +D K SI+TYS  GV +TS+  KKG L   DV  Q
Sbjct:    1 MGKGPGLYTEIGKKARDLLYKDYQSDHKFSITTYSPTGVVITSSGSKKGDLFLADVNTQ 59          
BLAST of EG358259 vs. ExPASy Swiss-Prot
Match: VDAC2_SOLTU (Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.038e-13
Identity = 33/59 (55.93%), Postives = 46/59 (77.97%), Query Frame = 2
Query:   77 MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQ 253
            M KGPGL++DIGKKA+DLL +DY +D K +++TYS  GVA+T++ +KKG L   DV+ Q
Sbjct:    1 MVKGPGLYSDIGKKARDLLYRDYVSDHKFTVTTYSTTGVAITASGLKKGELFLADVSTQ 59          
BLAST of EG358259 vs. ExPASy Swiss-Prot
Match: VDAC1_WHEAT (Mitochondrial outer membrane porin OS=Triticum aestivum GN=VDAC1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.651e-11
Identity = 28/56 (50.00%), Postives = 42/56 (75.00%), Query Frame = 2
Query:   86 GPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQ 253
            GPGL++ IGKKAKDLL +DY  D K +++TY+  G A+T+T+ KK  L+ G++ +Q
Sbjct:    3 GPGLYSGIGKKAKDLLYRDYQTDHKFTLTTYTANGPAITATSTKKADLTVGEIQSQ 58          
BLAST of EG358259 vs. ExPASy Swiss-Prot
Match: VDAC1_ORYSJ (Mitochondrial outer membrane protein porin OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 7.381e-11
Identity = 28/56 (50.00%), Postives = 42/56 (75.00%), Query Frame = 2
Query:   86 GPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQ 253
            GPGL+ +IGKKA+DLL +DY  D K +++TY+  GVA+T+T+ KK  L  G++ +Q
Sbjct:    3 GPGLYPEIGKKARDLLYRDYQTDHKFTLTTYTSNGVAITATSTKKADLIFGEIQSQ 58          
The following BLAST results are available for this feature:
BLAST of EG358259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
VDAC1_ARATH7.620e-1667.80Mitochondrial outer membrane protein porin 1 OS=Ar... [more]
VDAC_PEA8.425e-1564.41Outer plastidial membrane protein porin OS=Pisum s... [more]
VDAC2_ARATH8.425e-1561.02Mitochondrial outer membrane protein porin 2 OS=Ar... [more]
VDAC1_SOLTU4.623e-1359.32Mitochondrial outer membrane protein porin of 34 k... [more]
VDAC2_SOLTU6.038e-1355.93Mitochondrial outer membrane protein porin of 36 k... [more]
VDAC1_WHEAT5.651e-1150.00Mitochondrial outer membrane porin OS=Triticum aes... [more]
VDAC1_ORYSJ7.381e-1150.00Mitochondrial outer membrane protein porin OS=Oryz... [more]
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Properties
Property NameValue
Genbank description9a7 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar Citrus sinensis cDNA clone Cl0009a7, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358259 ID=EG358259; Name=EG358259; organism=Citrus sinensis; type=EST; length=253bp
ACGCGGGGGAACCACTCCTCTGGCTCTCCCAAACTTCGCACAGATCCTTC
ACTTTCGTCTCTCTCACTAGTCAACCATGAGTAAGGGACCGGGGCTCTTC
GCCGACATCGGTAAAAAAGCCAAAGATCTTTTGACGAAGGACTACAACGC
CGATCAGAAAATCAGTATCTCCACTTACAGCGGTGCCGGAGTGGCTCTCA
CATCAACTGCTGTGAAAAAGGGAGGACTCTCTGCTGGTGATGTTGCTGCA
CAG
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