DY257369

Overview
NameDY257369
Unique NameDY257369
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length405
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5845 contig Csv1_Contig5845:1081..1485. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY257369 vs. ExPASy Swiss-Prot
Match: ZIP4_ARATH (Zinc transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ZIP4 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.865e-17
Identity = 44/47 (93.62%), Postives = 45/47 (95.74%), Query Frame = 3 
Query:    3 LVYMALVDLIAADFLSKRMSCNFRLQVVSYLMLFLGAGLMSLLAIWA 143
            LVYMALVDLIAADFLSKRMSCN RLQVVSY+MLFLGAGLMS LAIWA
Sbjct:  328 LVYMALVDLIAADFLSKRMSCNLRLQVVSYVMLFLGAGLMSALAIWA 374
[Close]
BLAST of DY257369 vs. ExPASy Swiss-Prot
Match: IRT3_ARATH (Fe(2+) transport protein 3, chloroplastic OS=Arabidopsis thaliana GN=IRT3 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 2.692e-16
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 3 
Query:    3 LVYMALVDLIAADFLSKRMSCNFRLQVVSYLMLFLGAGLMSLLAIWA 143
            LVYMALVDLIAADFLS +M CNFRLQ+VSY+MLFLGAGLMS LAIWA
Sbjct:  343 LVYMALVDLIAADFLSTKMRCNFRLQIVSYVMLFLGAGLMSSLAIWA 389
[Close]
BLAST of DY257369 vs. ExPASy Swiss-Prot
Match: ZIP9_ARATH (Zinc transporter 9 OS=Arabidopsis thaliana GN=ZIP9 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.131e-14
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 3 
Query:    3 LVYMALVDLIAADFLSKRMSCNFRLQVVSYLMLFLGAGLMSLLAIWA 143
            LVYMALVDLIAADFLSK+MS +FR+QVVSY  LFLGAG+MS LAIWA
Sbjct:  298 LVYMALVDLIAADFLSKKMSVDFRVQVVSYCFLFLGAGMMSALAIWA 344
The following BLAST results are available for this feature:
BLAST of DY257369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ZIP4_ARATH1.865e-1793.62Zinc transporter 4, chloroplastic OS=Arabidopsis t... [more]
IRT3_ARATH2.692e-1687.23Fe(2+) transport protein 3, chloroplastic OS=Arabi... [more]
ZIP9_ARATH1.131e-1482.98Zinc transporter 9 OS=Arabidopsis thaliana GN=ZIP9... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK2AH05FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257369 ID=DY257369; Name=DY257369; organism=Citrus sinensis; type=EST; length=405bp
TTCTGGTGTACATGGCTTTAGTGGATCTAATTGCAGCAGATTTTCTCAGT
AAAAGGATGAGCTGCAATTTTAGGCTTCAAGTAGTGTCTTATTTGATGCT
GTTTCTTGGAGCTGGATTGATGTCTTTGCTTGCAATCTGGGCTTGACAAA
CTATTAGACTATGTCTTTTGGTTATTTATCTCCTCCCCCACCTTTAATTT
TTTCTATTGTTTTCAGAGCAACATGAAGAGAAATTTGTTCAATTCTTTCA
TAAAATTGCTTTAGTAGGGGAAGCATAGGTGCAAGGAGAGAAGCAAGAAA
TTGTATCCTTAGATTGTGATAATGTATCATTAGGTATGAAAATTTACTCT
CTTAATACAGATTGTAGCTGATGAGCAAATTAATAAAGTCAAAAAGTTCT
TTAGT
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