DY257496

Overview
NameDY257496
Unique NameDY257496
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length361
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10643 contig Csv1_Contig10643:887..1247. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257496 vs. ExPASy Swiss-Prot
Match: ACSL3_PONAB (Long-chain-fatty-acid--CoA ligase 3 OS=Pongo abelii GN=ACSL3 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.366e-12
Identity = 32/58 (55.17%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    4 QALS*VAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLY 177
            + LS  A +A L+KFEIP KI+L PEPWTPE GLVT A K+KR++LK  ++ D++ +Y
Sbjct:  660 KVLSEAAISASLEKFEIPVKIRLSPEPWTPETGLVTDAFKLKRKELKTHYQADIERMY 717          
BLAST of DY257496 vs. ExPASy Swiss-Prot
Match: ACSL3_HUMAN (Long-chain-fatty-acid--CoA ligase 3 OS=Homo sapiens GN=ACSL3 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 1.366e-12
Identity = 32/58 (55.17%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    4 QALS*VAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLY 177
            + LS  A +A L+KFEIP KI+L PEPWTPE GLVT A K+KR++LK  ++ D++ +Y
Sbjct:  660 KVLSEAAISASLEKFEIPVKIRLSPEPWTPETGLVTDAFKLKRKELKTHYQADIERMY 717          
BLAST of DY257496 vs. ExPASy Swiss-Prot
Match: ACSL3_RAT (Long-chain-fatty-acid--CoA ligase 3 OS=Rattus norvegicus GN=Acsl3 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.973e-12
Identity = 31/58 (53.45%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    4 QALS*VAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLY 177
            + LS  A +A L+KFEIP KI+L P+PWTPE GLVT A K+KR++LK  ++ D++ +Y
Sbjct:  660 KVLSEAAISASLEKFEIPLKIRLSPDPWTPETGLVTDAFKLKRKELKTHYQADIERMY 717          
BLAST of DY257496 vs. ExPASy Swiss-Prot
Match: ACSL3_MOUSE (Long-chain-fatty-acid--CoA ligase 3 OS=Mus musculus GN=Acsl3 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.973e-12
Identity = 31/58 (53.45%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    4 QALS*VAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLY 177
            + LS  A +A L+KFEIP KI+L P+PWTPE GLVT A K+KR++LK  ++ D++ +Y
Sbjct:  660 KVLSEAAISASLEKFEIPLKIRLSPDPWTPETGLVTDAFKLKRKELKTHYQADIERMY 717          
BLAST of DY257496 vs. ExPASy Swiss-Prot
Match: ACSL4_RAT (Long-chain-fatty-acid--CoA ligase 4 OS=Rattus norvegicus GN=Acsl4 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.156e-11
Identity = 29/52 (55.77%), Postives = 40/52 (76.92%), Query Frame = 1
Query:   22 AKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLY 177
            A A KL++FEIP K++L PEPWTPE GLVT A K+KR++LK  +  D++ +Y
Sbjct:  616 ANAMKLERFEIPIKVRLSPEPWTPETGLVTDAFKLKRKELKNHYLKDIERMY 667          
BLAST of DY257496 vs. ExPASy Swiss-Prot
Match: ACSL4_MOUSE (Long-chain-fatty-acid--CoA ligase 4 OS=Mus musculus GN=Acsl4 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.510e-11
Identity = 29/52 (55.77%), Postives = 40/52 (76.92%), Query Frame = 1
Query:   22 AKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLY 177
            A A KL++FEIP K++L PEPWTPE GLVT A K+KR++LK  +  D++ +Y
Sbjct:  657 ANAMKLERFEIPIKVRLSPEPWTPETGLVTDAFKLKRKELKNHYLKDVERMY 708          
BLAST of DY257496 vs. ExPASy Swiss-Prot
Match: ACSL4_HUMAN (Long-chain-fatty-acid--CoA ligase 4 OS=Homo sapiens GN=ACSL4 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.576e-11
Identity = 28/52 (53.85%), Postives = 40/52 (76.92%), Query Frame = 1
Query:   22 AKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLY 177
            A A KL++FEIP K++L PEPWTPE GLVT A K+KR++L+  +  D++ +Y
Sbjct:  657 ANAMKLERFEIPIKVRLSPEPWTPETGLVTDAFKLKRKELRNHYLKDIERMY 708          
The following BLAST results are available for this feature:
BLAST of DY257496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
ACSL3_PONAB1.366e-1255.17Long-chain-fatty-acid--CoA ligase 3 OS=Pongo abeli... [more]
ACSL3_HUMAN1.366e-1255.17Long-chain-fatty-acid--CoA ligase 3 OS=Homo sapien... [more]
ACSL3_RAT3.973e-1253.45Long-chain-fatty-acid--CoA ligase 3 OS=Rattus norv... [more]
ACSL3_MOUSE3.973e-1253.45Long-chain-fatty-acid--CoA ligase 3 OS=Mus musculu... [more]
ACSL4_RAT1.156e-1155.77Long-chain-fatty-acid--CoA ligase 4 OS=Rattus norv... [more]
ACSL4_MOUSE1.510e-1155.77Long-chain-fatty-acid--CoA ligase 4 OS=Mus musculu... [more]
ACSL4_HUMAN2.576e-1153.85Long-chain-fatty-acid--CoA ligase 4 OS=Homo sapien... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK2DD09FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257496 ID=DY257496; Name=DY257496; organism=Citrus sinensis; type=EST; length=361bp
CAACAAGCTCTTTCCTAGGTAGCAAAAGCTGCAAAACTCGACAAGTTTGA
GATTCCTGCAAAGATTAAGTTGATGCCAGAACCCTGGACACCCGAGGCTG
GATTGGTTACTGCTGCTTTGAAGATAAAGAGGGAACAACTCAAGGCTAAG
TTTAAGGATGATCTCCAAATGTTGTATCAGTAATAAATGGTGCATTTCTC
TTTGTTGCCTAGTTATGGCACATATTTGCAAGTTGCTACTTTTTAAGTTT
GTGATCTTTTTATCTGTAGAATGTGATTTTCTAACAAATTGGTGCCTATC
TTTCTACTTGAAATTCAAGTTTGATGTTTGGGTGCTGAACGGTGCTAGCC
TGAATTTCTAG
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