DY257351

Overview
NameDY257351
Unique NameDY257351
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13483 contig Csv1_Contig13483:3..614. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257351 vs. ExPASy Swiss-Prot
Match: DXR_ARATH (1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=DXR PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 5.681e-31
Identity = 67/86 (77.91%), Postives = 72/86 (83.72%), Query Frame = 3
Query:  171 IAYAAGRAGGTMTGVLSATNEKALEMFIDEKIGYLDIF*AEELT*DKHREYLVTSPSLEDIIHYDAWAREYAAGLQFSSGRSPVPA 428
            +AYAAGRAGGTMTGVLSA NEKA+EMFIDEKI YLDIF   ELT DKHR  LVTSPSLE+I+HYD WAREYAA +Q SSG  PV A
Sbjct:  392 LAYAAGRAGGTMTGVLSAANEKAVEMFIDEKISYLDIFKVVELTCDKHRNELVTSPSLEEIVHYDLWAREYAANVQLSSGARPVHA 477          
BLAST of DY257351 vs. ExPASy Swiss-Prot
Match: DXR_ORYSJ (1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=DXR PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 9.690e-31
Identity = 67/85 (78.82%), Postives = 72/85 (84.71%), Query Frame = 3
Query:  171 IAYAAGRAGGTMTGVLSATNEKALEMFIDEKIGYLDIF*AEELT*DKHREYLVTSPSLEDIIHYDAWAREYAAGLQFSSGRSPVP 425
            +AYAAGRAGGTMTGVLSA NEKA+E+FIDEKIGYLDIF   ELT D HR  LVT PSLE+IIHYD WAREYAA LQ S+G SPVP
Sbjct:  388 LAYAAGRAGGTMTGVLSAANEKAVELFIDEKIGYLDIFKVVELTCDAHRNELVTRPSLEEIIHYDLWAREYAASLQPSTGLSPVP 472          
BLAST of DY257351 vs. ExPASy Swiss-Prot
Match: DXR_MENPI (1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic OS=Mentha piperita GN=DXR PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 4.501e-28
Identity = 61/83 (73.49%), Postives = 69/83 (83.13%), Query Frame = 3
Query:  171 IAYAAGRAGGTMTGVLSATNEKALEMFIDEKIGYLDIF*AEELT*DKHREYLVTSPSLEDIIHYDAWAREYAAGLQFSSGRSP 419
            +AYAAGRAGGTMTGVLSA NEKA+EMFIDEKIGYLDIF   ELT DKHR  +  SPSLE+I+HYD WAR+YAA +  S+G SP
Sbjct:  385 LAYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDKHRSEMAVSPSLEEIVHYDQWARDYAATVLKSAGLSP 467          
BLAST of DY257351 vs. ExPASy Swiss-Prot
Match: DXR_PROMM (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus (strain MIT 9313) GN=dxr PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.836e-13
Identity = 42/88 (47.73%), Postives = 58/88 (65.91%), Query Frame = 3
Query:  171 IAYAAGRAGGTMTGVLSATNEKALEMFIDEKIGYLDIF*AEELT*DKHREYLVTSPSLEDIIHYDAWAREYAAGLQFSSG--RSPVPA 428
            +AYAAGRAGGTM  VL+A NE+A+  F++E+I +LDI    E   ++H+  L T P L+D++  DAWAR+ A   Q   G  R P+PA
Sbjct:  323 LAYAAGRAGGTMPAVLNAANEEAVAQFLEERIHFLDIPEVIEAACERHKPDLQTQPQLDDVLAVDAWARK-AVQEQVKRGTRRLPLPA 409          
BLAST of DY257351 vs. ExPASy Swiss-Prot
Match: DXR_SYNPX (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain WH8102) GN=dxr PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.132e-13
Identity = 41/90 (45.56%), Postives = 56/90 (62.22%), Query Frame = 3
Query:  171 IAYAAGRAGGTMTGVLSATNEKALEMFIDEKIGYLDIF*AEELT*DKHREYLVTSPSLEDIIHYDAWAREYAAGLQFSSGRSPVPA*LLA 440
            +AYAAGRAGGTM  V++A NE+A+  F++EKI +LDI    E   ++H+  L+  P LED++  D WAR  A   Q   G + VP   LA
Sbjct:  320 LAYAAGRAGGTMPAVMNAANEEAVAQFLEEKIHFLDIPVVIEAACERHKADLIAHPQLEDVLAVDQWAR-MAVREQVKRGTTRVPLAALA 408          
BLAST of DY257351 vs. ExPASy Swiss-Prot
Match: DXR_ANAVT (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=dxr PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.090e-13
Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = 3
Query:  159 HQKI----IAYAAGRAGGTMTGVLSATNEKALEMFIDEKIGYLDIF*AEELT*DKHREYLVTSPSLEDIIHYDAWARE 380
            HQK     +AYAAGRAGG+M  VL+A NE+ + +F+DEKI +LDI    EL  D+H+     +PSL+DI+  D WAR+
Sbjct:  302 HQKYPCMQLAYAAGRAGGSMPAVLNAANEQVVALFLDEKIKFLDIPRCIELVCDRHQNDNCANPSLDDILAADQWARQ 379          
BLAST of DY257351 vs. ExPASy Swiss-Prot
Match: DXR_ANASP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Anabaena sp. (strain PCC 7120) GN=dxr PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.090e-13
Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = 3
Query:  159 HQKI----IAYAAGRAGGTMTGVLSATNEKALEMFIDEKIGYLDIF*AEELT*DKHREYLVTSPSLEDIIHYDAWARE 380
            HQK     +AYAAGRAGG+M  VL+A NE+ + +F+DEKI +LDI    EL  D+H+     +PSL+DI+  D WAR+
Sbjct:  303 HQKYPCMQLAYAAGRAGGSMPAVLNAANEQVVALFLDEKIKFLDIPRCIELVCDRHQNDNCANPSLDDILAADQWARQ 380          
BLAST of DY257351 vs. ExPASy Swiss-Prot
Match: DXR_SYNS9 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain CC9902) GN=dxr PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.190e-12
Identity = 37/85 (43.53%), Postives = 55/85 (64.71%), Query Frame = 3
Query:  171 IAYAAGRAGGTMTGVLSATNEKALEMFIDEKIGYLDIF*AEELT*DKHREYLVTSPSLEDIIHYDAWAREYAAGLQFSSGRSPVP 425
            +AYAAGRAGGTM  V++A NE+A+  F++E+I +LDI    E   ++H+  L+  P L+D++  D WAR  A   Q S G + +P
Sbjct:  328 LAYAAGRAGGTMPAVMNAANEEAVAQFLEERIHFLDIPEVIEAACERHKPDLMAHPQLDDVLEVDQWART-AVREQVSRGTTRIP 411          
BLAST of DY257351 vs. ExPASy Swiss-Prot
Match: DXR_SYNP6 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=dxr PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.554e-12
Identity = 35/71 (49.30%), Postives = 50/71 (70.42%), Query Frame = 3
Query:  171 IAYAAGRAGGTMTGVLSATNEKALEMFIDEKIGYLDIF*AEELT*DKHREYLVTSPSLEDIIHYDAWAREY 383
            +AYAAGR GGTM  VL+A NE+A+ +F++E+I + DI    E   D+H+      PSL+DI+ YDAWAR++
Sbjct:  320 LAYAAGRKGGTMPAVLNAANEQAVALFLEEQIHFSDIPRLIERACDRHQTEWQQQPSLDDILAYDAWARQF 390          
BLAST of DY257351 vs. ExPASy Swiss-Prot
Match: DXR_SYNE7 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus elongatus (strain PCC 7942) GN=dxr PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.554e-12
Identity = 35/71 (49.30%), Postives = 50/71 (70.42%), Query Frame = 3
Query:  171 IAYAAGRAGGTMTGVLSATNEKALEMFIDEKIGYLDIF*AEELT*DKHREYLVTSPSLEDIIHYDAWAREY 383
            +AYAAGR GGTM  VL+A NE+A+ +F++E+I + DI    E   D+H+      PSL+DI+ YDAWAR++
Sbjct:  320 LAYAAGRKGGTMPAVLNAANEQAVALFLEEQIHFSDIPRLIERACDRHQTEWQQQPSLDDILAYDAWARQF 390          
The following BLAST results are available for this feature:
BLAST of DY257351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
DXR_ARATH5.681e-3177.911-deoxy-D-xylulose 5-phosphate reductoisomerase, c... [more]
DXR_ORYSJ9.690e-3178.821-deoxy-D-xylulose 5-phosphate reductoisomerase, c... [more]
DXR_MENPI4.501e-2873.491-deoxy-D-xylulose 5-phosphate reductoisomerase, c... [more]
DXR_PROMM1.836e-1347.731-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNPX3.132e-1345.561-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ANAVT4.090e-1350.001-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ANASP4.090e-1350.001-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNS91.190e-1243.531-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNP61.554e-1249.301-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNE71.554e-1249.301-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2AE01FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257351 ID=DY257351; Name=DY257351; organism=Citrus sinensis; type=EST; length=613bp
GATCTTCAGATCATAAGTTGATGATGAAGATAAAAAAAATGAAAATAATT
TCTGTTCTTCTTTTGCCAGCTCATTAAGCACTGATATTTCCTTAACGAGT
TTGGATCTTATCAAAACTACAGTATCAAAGAAAGATACTCCAGACACAAA
TTGATATACATCAGAAAATCATTGCCTATGCTGCTGGACGGGCTGGAGGA
ACCATGACTGGAGTTCTTAGTGCAACTAACGAGAAAGCATTAGAGATGTT
CATTGATGAAAAGATTGGCTATCTGGATATTTTCTAGGCTGAGGAGCTGA
CGTGAGATAAGCACAGGGAGTACTTGGTAACCTCGCCTTCCCTAGAGGAT
ATAATACATTATGATGCATGGGCACGAGAGTATGCAGCTGGTTTGCAATT
TTCATCTGGTAGAAGCCCTGTTCCAGCATGACTGCTTGCATTGATGCCCT
ACTTGGAGAACAAGAGAGAGGTGTTTACTTTTTACCAAAAACTGCTATCT
CTCGTCAATGTTTAAAGAGGCATCGAGCAATTGTACCATAAATAAATATA
AAGTGGGGATTCAGTATGTGTCCCCGATTTTATAGGTGCAAATGTGTGAC
TGCCTTGTTTAAC
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