DY257349

Overview
NameDY257349
Unique NameDY257349
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1306
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY257349_ssr1275 microsatellite DY257349_ssr1275:1275..1286. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY257349 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 2.200e-39
Identity = 104/246 (42.28%), Postives = 133/246 (54.07%), Query Frame = 3
Query:  114 MCGGAIISGYIPPTVPGRPKKLTAEYLWPELK-------RSSNKKYSKPIVDDDFEADFQGFKXXXXXXXXXXXXXXXXXXXXXXXKPFTFSAGRK----------------SHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDE---TPAAAPKSSGKANS-QKSV--PKACLSPVQPSLNQNFHYLNNSEQDNY 764
            MCGGAIIS +IPP    R  ++T E++WP+LK       + SNK+     +DDDFEADFQGFK                       KPF F+A  K                ++    V+  EQA+KS++RKRKNQYRGIRQRPWGKWAAEIRDP KG R WLGTF+T              IRG KAKVNFP+E   +  +  + S K N+ QKSV  P   ++ VQ   + +  Y NNS  +++
Sbjct:    1 MCGGAIISDFIPPP---RSLRVTNEFIWPDLKNKVKASKKRSNKRSDFFDLDDDFEADFQGFKDDSAFDCEDDDDVFVNV------KPFVFTATTKPVASAFVSTGIYLVGSAYAKKTVESAEQAEKSSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFPEEKNPSVVSQKRPSAKTNNLQKSVAKPNKSVTLVQQPTHLSQQYCNNSFDNSF 237          
BLAST of DY257349 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 4.148e-38
Identity = 103/223 (46.19%), Postives = 125/223 (56.05%), Query Frame = 3
Query:  114 MCGGAIISGYIPPTVPGRPKKLTAEYLWPELKRS--SNKKYSKPI-----VDDDFEADFQGFKXXXXXXXXXXXXXXXXXXXXXXXKPFTFSAGRK------SHGSTAVKHVE----QAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDET-PAAAPKSSGKANSQKSVPKACLSPVQPSLNQN 728
            MCGGAIIS +IPP    R +++T+E++WP+LK++   +KK SK        D +FEADFQGFK                       KPF F++  K      + GS   K V      A+KS  RKRKNQYRGIRQRPWGKWAAEIRDP +G R+WLGTF T              IRG KAKVNFP+E   A + K S KAN QK V K   +P  P+L QN
Sbjct:    1 MCGGAIISDFIPPP---RSRRVTSEFIWPDLKKNLKGSKKSSKNRSNFFDFDAEFEADFQGFKDDSSIDCDDDFDVGDVFADV---KPFVFTSTPKPAVSAAAEGSVFGKKVTGLDGDAEKSANRKRKNQYRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNFPEENMKANSQKRSVKANLQKPVAKPNPNP-SPALVQN 216          
BLAST of DY257349 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.747e-28
Identity = 88/233 (37.77%), Postives = 115/233 (49.36%), Query Frame = 3
Query:  114 MCGGAIISGYIPPTVPGRP---KKLTAEYLWPELKR----SSNKKYSKPIV---DDDFEADFQGFKXXXXXXXXXXXXXXXXXXXXXXXKPFTFSAGRKSHGSTAVKHVE-QAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAPKSSGKANSQKSVPKACLSPVQPSLNQNFHYLNNSEQDNYTMGVF 779
            MCGGAII       + G P   ++ T   LWPE K+       +++    V   D+DFEADF+ F+                         F  +  R +  +      +  A KS +RKRKNQ+RGIRQRPWGKWAAEIRDP KGVRVWLGTFN+              IRGKKAKVNFP E P  A K    + + K+ PK+ +   +P++   F+ L N+    Y    F
Sbjct:    1 MCGGAIIHH-----LKGHPEGSRRATEGLLWPEKKKPRWGGGGRRHFGGFVEEDDEDFEADFEEFEVDSGDSDLELGEEDDDDVVEIKPAAFKRALSRDNLSTITTAGFDGPAAKSAKRKRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNFP-EAPTTAQKRRAGSTTAKA-PKSSVEQ-KPTVKPAFNNLANANAFVYPSANF 225          
BLAST of DY257349 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 9.586e-27
Identity = 78/200 (39.00%), Postives = 91/200 (45.50%), Query Frame = 3
Query:  114 MCGGAIISGYIPPTVPGRPKKLTAEYLWPELKRSSNKKYSKPIVDDDFEADFQGFKXXXXXXXXXXXXXXXXXXXXXXXKPFTFSAGRKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPD-----ETPAAAPKSSGKANSQKSVPKACL 698
            MCGGAIIS Y P     + +KLTAE LW EL  S+          DDF   +   K                               + +    AVK  +  +    RKRKN YRGIR+RPWGKWAAEIRDP KGVRVWLGTFNT              IRG KAK+NFPD           P SS ++  Q    K C+
Sbjct:    1 MCGGAIISDYAPLVTKAKGRKLTAEELWSELDASAA---------DDFWGFYSTSKLHP--------------------------TNQVNVKEEAVKKEQATEPGKRRKRKNVYRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFPDLHHPPPPNYTPPPSSPRSTDQPPAKKVCV 165          
BLAST of DY257349 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.255e-18
Identity = 43/69 (62.32%), Postives = 51/69 (73.91%), Query Frame = 3
Query:  420 KKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPD 626
            ++  +R+RKN YRGIRQRPWGKWAAEIRDP+KGVRVWLGTF T              IRG+KAK+NFP+
Sbjct:   39 ERDGKRERKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNFPN 107          
BLAST of DY257349 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.387e-17
Identity = 49/127 (38.58%), Postives = 72/127 (56.69%), Query Frame = 3
Query:  432 ERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAPKSSGKANSQKSVPKACLSPVQPSLNQNFHYLNNSEQDNYTMGVFWRKNNSESVWI 812
            ++K+ ++Y+GIR+RPWG+WAAEIRDP KGVRVWLGTFNT              IRG KAK+NFP+E       SSGK  ++    +      +  L+     + +S   +  +   W +NN +++ I
Sbjct:   18 KKKQSSRYKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNFPNE-------SSGKRKAKAKTVQQVEENHEADLDV---AVVSSAPSSSCLDFLWEENNPDTLLI 134          
BLAST of DY257349 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.037e-17
Identity = 49/126 (38.89%), Postives = 65/126 (51.59%), Query Frame = 3
Query:  390 STAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAPKSS-----------GKANSQKSVPKACLSPVQPSLNQNFH 734
            +TA    E +  S ++ R+ +YRG+RQRPWGKWAAEIRDP K  RVWLGTF+                RG KAK+NFP+      P S+               S+ S     L P++P+ NQ+ H
Sbjct:  165 TTATASSETSSFSGDQPRR-RYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDNAESAARAYDEAALRFRGNKAKLNFPENVKLVRPASTEAQPVHQTAAQRPTQSRNSGSTTTLLPIRPASNQSVH 289          
BLAST of DY257349 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 8.993e-17
Identity = 50/116 (43.10%), Postives = 62/116 (53.45%), Query Frame = 3
Query:  360 TFSAGRKSHGSTAVKHVEQAKKSTERK-RKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFP-------DETPAAAPKSSGKANSQKSV 683
            T S+ R+   S   K  E   K  +RK +KN YRG+RQRPWGK+AAEIRDP +  RVWLGTF T               RG +AK+NFP         +P AA     KA++  SV
Sbjct:  104 TSSSNRRRESSPVAKKAEGGGKIRKRKNKKNGYRGVRQRPWGKFAAEIRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFPFVDYTSSVSSPVAADDIGAKASASASV 219          
BLAST of DY257349 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.616e-16
Identity = 43/111 (38.74%), Postives = 60/111 (54.05%), Query Frame = 3
Query:  441 RKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAPKSSGKANSQKSVPKACLSPVQPSLNQNFHYLNNSEQDNYTMG 773
            R+  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T               +G KAK+NFP+        S+    S   +P+     + P+ NQ +H  ++ +  ++ +G
Sbjct:   86 RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFPERVQLG---SNSTYYSSNQIPQMEPQSI-PNYNQYYHDASSGDMLSFNLG 192          
BLAST of DY257349 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 3.417e-16
Identity = 42/98 (42.86%), Postives = 56/98 (57.14%), Query Frame = 3
Query:  354 PFTFSAGRKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAP 647
            P +F+    SH     + + +A     R++K +YRG+RQRPWGKWAAEIRDP +  RVWLGTF+T               RG KAK+NFP++     P
Sbjct:   45 PSSFARVDSSHNPIE-ESMSKAFPEEAREKKRRYRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPEDVRILPP 141          
The following BLAST results are available for this feature:
BLAST of DY257349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
RAP22_ARATH2.200e-3942.28Ethylene-responsive transcription factor RAP2-2 OS... [more]
RA212_ARATH4.148e-3846.19Ethylene-responsive transcription factor RAP2-12 O... [more]
ERF1_ORYSJ1.747e-2837.77Ethylene-responsive transcription factor 1 OS=Oryz... [more]
RAP23_ARATH9.586e-2739.00Ethylene-responsive transcription factor RAP2-3 OS... [more]
ERF71_ARATH1.255e-1862.32Ethylene-responsive transcription factor ERF071 OS... [more]
ERF73_ARATH1.387e-1738.58Ethylene-responsive transcription factor ERF073 OS... [more]
ABR1_ARATH4.037e-1738.89Ethylene-responsive transcription factor ABR1 OS=A... [more]
EF109_ARATH8.993e-1743.10Ethylene-responsive transcription factor ERF109 OS... [more]
EF114_ARATH2.616e-1638.74Ethylene-responsive transcription factor ERF114 OS... [more]
EF110_ARATH3.417e-1642.86Ethylene-responsive transcription factor ERF110 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2AD11FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257349 ID=DY257349; Name=DY257349; organism=Citrus sinensis; type=EST; length=1306bp
CCGACACTCTCTCTTTTGGAGAAGAGCAAAGTTTACATTGAACCCAGTCT
CTTCTAAAAAGCTTTTCTCTTTAGTCCCTGAACTAAAACCAGAAGAAACG
AGAAACCTTAACCATGTGTGGAGGTGCTATCATTTCGGGCTACATCCCGC
CCACCGTGCCGGGCCGGCCAAAGAAGCTGACGGCGGAGTATCTCTGGCCG
GAGCTGAAGAGGTCATCCAACAAGAAGTACTCAAAGCCGATCGTCGACGA
TGACTTCGAGGCTGATTTCCAAGGATTCAAGGACGATGAAGAAGAGTCTG
ACATTGATGGTGACGTGGACGTTGATGCCGACTTGATGATGGCTGATATT
AAGCCTTTCACTTTCTCAGCTGGTCGCAAGTCTCATGGATCTACAGCCGT
GAAGCACGTTGAACAAGCTAAAAAATCCACAGAAAGAAAGAGGAAGAATC
AATATAGGGGAATTAGGCAGCGTCCATGGGGAAAATGGGCTGCTGAGATC
CGTGATCCCACAAAAGGGGTTCGTGTCTGGCTAGGAACTTTCAATACCGC
TGAAGAAGCCGCTAGGGCTTATGATGCCGAGGCACGGAGGATCCGTGGGA
AGAAAGCTAAGGTTAACTTTCCAGATGAAACTCCTGCTGCTGCTCCAAAG
AGCTCAGGGAAGGCAAACTCTCAGAAATCAGTTCCCAAAGCTTGCCTAAG
CCCCGTGCAGCCAAGTTTGAACCAGAACTTCCATTACTTGAACAACTCCG
AACAGGATAACTACACAATGGGAGTATTCTGGAGAAAAAACAACAGTGAA
TCAGTATGGATATATGGGGCTCCTTCCCGGAAGAGGGAGAACTAGGAATC
AAAACCCTTGGGGCCAACAGCTGAATGAAACTCCTTTGGTACTTCAAATC
CGAACCAAGGGAAAAACCTCCTTTGGATGGGTCGGAATTTGGGGGGGGGG
AAAAAAGGGAATCAAAAAATCCCGGAATTCTTATTTTGGTTTGGGAAAGC
TCCCCCCCGAAAGGTGGAAGAATTCCCGAGGTGGGGGGGGGCGGGGGGGG
GAACACCCAAAGGAAGAAAGTAGAAAAACTCAAACCCTGGGAAAAAGGGG
GGGGGGCCGGGTTAGGGGAAAAAAAAGAGGGAAGAGAGTCCTTGTGTCGT
GGGAAGAAGCTGTTTTGTGGGGTTTTGATTGAAAAAAAAAAGGGGGAAAG
AGTTTCTTTGAGCGCCCCGAGCGGCCGCAGAACACCCGCGGAGGAAGGGA
AAAGAAGGGGGGGGGGGGGGGGGCCCCTCCCTCCCTCCCCCGCCACGGCG
GTCTCC
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