DY257485

Overview
NameDY257485
Unique NameDY257485
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1457 contig Csv1_Contig1457:900..1672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY257485 vs. ExPASy Swiss-Prot
Match: NUP53_DANRE (Nucleoporin NUP53 OS=Danio rerio GN=nup35 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.964e-12
Identity = 49/149 (32.89%), Postives = 74/149 (49.66%), Query Frame = 1 
Query:  181 FPPADTNLVLREFEKCGVILKHVPGPRDVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKP-LDPMQRQALNERINSQGFMTLP--PPSSRTSELNSFRASSRPY---YLQNGHTSTGQSGGAIASPAKSMVSKIMDLMFG 609
            FPPA  + +L +F + G ILKHV            NWMH+ YQ++  A+KALSK+G      +++GVKP +D    ++L++   S    T P   P + +  L++ R+  RP    Y  +       S        +S VSK M+ MFG
Sbjct:  166 FPPASASYILLQFAQYGNILKHVMS-------NTGNWMHVQYQSKLQARKALSKDGKIFGEAIMIGVKPCIDKSVMESLDKGSTSSSVFTPPVKAPCTPSHPLSTPRSVMRPLSAAYKASSSDYQVVSDQQTPKKDESFVSKAMEYMFG 307
The following BLAST results are available for this feature:
BLAST of DY257485 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NUP53_DANRE8.964e-1232.89Nucleoporin NUP53 OS=Danio rerio GN=nup35 PE=1 SV=... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK2DB12FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257485 ID=DY257485; Name=DY257485; organism=Citrus sinensis; type=EST; length=772bp
TTTTTGGAACTTAAGGGGTCACTTTGATGCTAGTTGGAATTGATTTAATC
CATTGTTAGTTCGCTTCTACTTTTCATATATGTGTGAAACGTAGTGATTT
GTAATAACATGAGGAACCCATTCTTGCGAACAAACCTAACCCCTACACAC
ACCTAGGGGCACCCCTTCCTGCATATACGATTTCCTCCAGCTGATACCAA
TTTGGTTTTGCGAGAATTTGAAAAGTGTGGTGTGATCTTGAAACATGTTC
CTGGTCCAAGAGATGTTCCTGGTCCAAGAGATGCTAACTGGATGCACATT
CTATATCAGAATCGTTCTGATGCTCAAAAGGCTCTCAGCAAGAATGGGAT
GCAAATCAATGGAGTCCTAATTGTTGGTGTGAAACCATTGGATCCAATGC
AACGCCAAGCTTTGAATGAAAGAATTAACAGTCAAGGATTTATGACTCTT
CCCCCTCCGTCCAGCAGAACCTCGGAGCTGAACTCATTTAGAGCATCCTC
GCGCCCATATTATCTTCAAAATGGACATACAAGCACAGGACAGTCAGGAG
GTGCCATTGCTTCCCCAGCCAAGTCTATGGTTTCCAAAATCATGGATTTG
ATGTTTGGCATTTAGGATACAGTCACCCACTAGATTTCTATTTTCTTGTT
ATAATCAAATGTATGAAGCAATTCAAATATATAATTGAGAGTATCTGGCT
ATCTGCAAATGTCCTTTGTAGCTCAAATCAGCAATTTTCCCTGGTTTGGG
ATAATATAGCTCTAATTGTCAC
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