DY257336

Overview
NameDY257336
Unique NameDY257336
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1136
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257336 vs. ExPASy Swiss-Prot
Match: HEXP_LEIMA (DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=4 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.123e-23
Identity = 67/202 (33.17%), Postives = 84/202 (41.58%), Query Frame = 1
Query:   25 TCYNCGEEGHMAVNCRSAV----KRKKPCFVCGSLEHGVRQCSK--------AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNS--------------------YSLDDLKEVQCYICRCFGHLC--CVNISDAVPG--EVSCFRCGQLGHTGLACARSRGETVEASPSSCYKCGAEGHFARECVSS 522
            +C NCG+EGH A  C  A     +R   CF CG   H  R+C          A  CF C + GH ++DCP+  K G      C KCG  GH    C +S                    YS D      CY C   GH+   C N      G  + +C++CG  GH    C   +G    A    CYKCG  GH +REC S+
Sbjct:   17 SCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRT----CYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRKCYKCGESGHMSRECPSA 214          

HSP 2 Score: 105.531 bits (262), Expect = 5.889e-22
Identity = 62/205 (30.24%), Postives = 91/205 (44.39%), Query Frame = 1
Query:   16 GWQTCYNCGEEGHMAVNCRSAVK----RKKPCFVCGSLEHGVRQCSKAQD------------------------CFICKKGGHRAKDCPDKHKSGFQNA--QVCLKCGDSGHDMFSCRNSYS-LDDLKEVQCYICRCFGHLC--CVNISDAVPGEVSCFRCGQLGHTGLACAR---SRGETVEASPSSCYKCGAEGHFARECVSS 522
            G  TC+ CGE GHM+ +C ++ K    +   C+ CG   H  R C  +Q                         C+ C   GH ++DCP+  + G+  A  + C KCGD+GH    C N         + +CY C   GH+   C +      G+ +C++CG+ GH    C     S G +      +CYKCG  GH +R+C SS
Sbjct:   68 GAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNG-QGGYSGAGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRKCYKCGESGHMSRECPSAGSTGSGDRACYKCGKPGHISRECPEAGGSYGGSRGGGDRTCYKCGEAGHISRDCPSS 271          
BLAST of DY257336 vs. ExPASy Swiss-Prot
Match: CNBP_CHICK (Cellular nucleic acid-binding protein OS=Gallus gallus GN=CNBP PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.713e-21
Identity = 58/183 (31.69%), Postives = 81/183 (44.26%), Query Frame = 1
Query:   28 CYNCGEEGHMAVNCRSAVKRKKP-------------------CFVCGSLEHGVRQCSKAQD--CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGLACARSRGETVEASPSSCYKCGAEGHFAREC 513
            C+ CG  GH A  C + + R +                    C+ CG   H  + C   +D  C+ C +GGH AKDC +  +   +  Q C  CG  GH    C      D   E +CY C  FGH+      D    +V C+RCG+ GH  + C+++       S  +CY+CG  GH AREC
Sbjct:    6 CFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDCDLQEDKACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYSCGEFGHIQ----KDCT--KVKCYRCGETGHVAINCSKT-------SEVNCYRCGESGHLAREC 166          

HSP 2 Score: 75.485 bits (184), Expect = 6.526e-13
Identity = 45/147 (30.61%), Postives = 65/147 (44.22%), Query Frame = 1
Query:   22 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGLACARSRGETVEAS 462
            + CYNCG  GH+A +C+   + ++ C                  C+ C K GH A+DC         + Q C  CG+ GH    C          +V+CY C   GH   V I+ +   EV+C+RCG+ GH    C      T+EA+
Sbjct:   67 KACYNCGRGGHIAKDCKEPKREREQC------------------CYNCGKPGHLARDC------DHADEQKCYSCGEFGHIQKDC---------TKVKCYRCGETGH---VAINCSKTSEVNCYRCGESGHLAREC------TIEAT 171          
BLAST of DY257336 vs. ExPASy Swiss-Prot
Match: CNBP_BOVIN (Cellular nucleic acid-binding protein OS=Bos taurus GN=CNBP PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.817e-21
Identity = 58/181 (32.04%), Postives = 80/181 (44.20%), Query Frame = 1
Query:   28 CYNCGEEGHMAVNCRSAVKRKKP------------------CFVCGSLEHGVRQCSKAQD-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGLACARSRGETVEASPSSCYKCGAEGHFAREC 513
            C+ CG  GH A  C +   R +                   C+ CG   H  + C   +D C+ C +GGH AKDC +  +   +  Q C  CG  GH    C      D   E +CY C  FGH+      D    +V C+RCG+ GH  + C+++       S  +CY+CG  GH AREC
Sbjct:    6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYSCGEFGHIQ----KDCT--KVKCYRCGETGHVAINCSKT-------SEVNCYRCGESGHLAREC 164          
BLAST of DY257336 vs. ExPASy Swiss-Prot
Match: CNBP_RAT (Cellular nucleic acid-binding protein OS=Rattus norvegicus GN=Cnbp PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.474e-20
Identity = 58/188 (30.85%), Postives = 80/188 (42.55%), Query Frame = 1
Query:   28 CYNCGEEGHMAVNCRSAVKRKKP-------------------------CFVCGSLEHGVRQCSKAQD-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGLACARSRGETVEASPSSCYKCGAEGHFAREC 513
            C+ CG  GH A  C +   R +                          C+ CG   H  + C   +D C+ C +GGH AKDC +  +   +  Q C  CG  GH    C      D   E +CY C  FGH+      D    +V C+RCG+ GH  + C+++       S  +CY+CG  GH AREC
Sbjct:    6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYSCGEFGHIQ----KDCT--KVKCYRCGETGHVAINCSKT-------SEVNCYRCGESGHLAREC 171          
BLAST of DY257336 vs. ExPASy Swiss-Prot
Match: CNBP_PONAB (Cellular nucleic acid-binding protein OS=Pongo abelii GN=CNBP PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.474e-20
Identity = 58/188 (30.85%), Postives = 80/188 (42.55%), Query Frame = 1
Query:   28 CYNCGEEGHMAVNCRSAVKRKKP-------------------------CFVCGSLEHGVRQCSKAQD-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGLACARSRGETVEASPSSCYKCGAEGHFAREC 513
            C+ CG  GH A  C +   R +                          C+ CG   H  + C   +D C+ C +GGH AKDC +  +   +  Q C  CG  GH    C      D   E +CY C  FGH+      D    +V C+RCG+ GH  + C+++       S  +CY+CG  GH AREC
Sbjct:    6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYSCGEFGHIQ----KDCT--KVKCYRCGETGHVAINCSKT-------SEVNCYRCGESGHLAREC 171          
BLAST of DY257336 vs. ExPASy Swiss-Prot
Match: CNBP_HUMAN (Cellular nucleic acid-binding protein OS=Homo sapiens GN=CNBP PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.474e-20
Identity = 58/188 (30.85%), Postives = 80/188 (42.55%), Query Frame = 1
Query:   28 CYNCGEEGHMAVNCRSAVKRKKP-------------------------CFVCGSLEHGVRQCSKAQD-CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGLACARSRGETVEASPSSCYKCGAEGHFAREC 513
            C+ CG  GH A  C +   R +                          C+ CG   H  + C   +D C+ C +GGH AKDC +  +   +  Q C  CG  GH    C      D   E +CY C  FGH+      D    +V C+RCG+ GH  + C+++       S  +CY+CG  GH AREC
Sbjct:    6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYSCGEFGHIQ----KDCT--KVKCYRCGETGHVAINCSKT-------SEVNCYRCGESGHLAREC 171          
BLAST of DY257336 vs. ExPASy Swiss-Prot
Match: CNBP_MOUSE (Cellular nucleic acid-binding protein OS=Mus musculus GN=Cnbp PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 3.231e-20
Identity = 58/189 (30.69%), Postives = 80/189 (42.33%), Query Frame = 1
Query:   28 CYNCGEEGHMAVNCRSAVKRKKP-------------------------CFVCGSLEHGVRQCSKAQD--CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGLACARSRGETVEASPSSCYKCGAEGHFAREC 513
            C+ CG  GH A  C +   R +                          C+ CG   H  + C   +D  C+ C +GGH AKDC +  +   +  Q C  CG  GH    C      D   E +CY C  FGH+      D    +V C+RCG+ GH  + C+++       S  +CY+CG  GH AREC
Sbjct:    6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYSCGEFGHIQ----KDCT--KVKCYRCGETGHVAINCSKT-------SEVNCYRCGESGHLAREC 172          

HSP 2 Score: 75.8702 bits (185), Expect = 4.997e-13
Identity = 45/147 (30.61%), Postives = 65/147 (44.22%), Query Frame = 1
Query:   22 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGLACARSRGETVEAS 462
            + CYNCG  GH+A +C+   + ++ C                  C+ C K GH A+DC         + Q C  CG+ GH    C          +V+CY C   GH   V I+ +   EV+C+RCG+ GH    C      T+EA+
Sbjct:   73 EACYNCGRGGHIAKDCKEPKREREQC------------------CYNCGKPGHLARDC------DHADEQKCYSCGEFGHIQKDC---------TKVKCYRCGETGH---VAINCSKTSEVNCYRCGESGHLAREC------TIEAT 177          
BLAST of DY257336 vs. ExPASy Swiss-Prot
Match: BYR3_SCHPO (Cellular nucleic acid-binding protein homolog OS=Schizosaccharomyces pombe GN=byr3 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 4.666e-19
Identity = 53/173 (30.64%), Postives = 70/173 (40.46%), Query Frame = 1
Query:   28 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD---CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD------DLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGLACARSRGETVEASPSSCYKCGAEGHFARECVS 519
            CYNCGE GH A  C     +   C+ C    H   +C++ Q    C+ C   GH  +DCP       +    C KCG  GH    CR +              + CY C  +GH       D   G V C+ CG++GH    C ++      +    CYKC   GH A  C S
Sbjct:   19 CYNCGENGHQAREC----TKGSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNP--RQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGH----QARDCTMG-VKCYSCGKIGHRSFECQQA------SDGQLCYKCNQPGHIAVNCTS 174          

HSP 2 Score: 68.9366 bits (167), Expect = 6.108e-11
Identity = 39/132 (29.55%), Postives = 58/132 (43.94%), Query Frame = 1
Query:  154 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGE-VSCFRCGQLGHTGLACARSRGETV------EASPSSCYKCGAEGHFARECVSSSK 528
            C+ C + GH+A++C            +C  C  +GH    C      +  +E  CY C   GHL     S   P +   C++CG++GH    C R+ G+          S  +CY CG+ GH AR+C    K
Sbjct:   19 CYNCGENGHQARECT--------KGSICYNCNQTGHKASECT-----EPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDC-RTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVK 136          
BLAST of DY257336 vs. ExPASy Swiss-Prot
Match: GIS2_YEAST (Zinc finger protein GIS2 OS=Saccharomyces cerevisiae GN=GIS2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.029e-14
Identity = 44/163 (26.99%), Postives = 62/163 (38.04%), Query Frame = 1
Query:   28 CYNCGEEGHMAVNCRSA-VKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGLACARSRGETVEASPSSCYKCGAEGHFAREC 513
            CYNC + GH+  +C        K C+ CG   H   +C+  Q CF C + GH +++CP+  K+   +   C KCG   H    C     +  LK                           C+ CGQ GH    C   R          CY C   GH +++C
Sbjct:   25 CYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSECT-VQRCFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKDCMKEDGISGLK---------------------------CYTCGQAGHMSRDCQNDR---------LCYNCNETGHISKDC 150          

HSP 2 Score: 78.9518 bits (193), Expect = 5.903e-14
Identity = 43/145 (29.66%), Postives = 61/145 (42.07%), Query Frame = 1
Query:   88 KKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGHTGLACARSRGETVEASPSSCYKCGAEGHFAREC 513
            +K C+VCG + H    C   + C+ C K GH   DC       F+    C  CG++GH    C            +C+ C   GH+   C      +   +VSC++CG   H    C +  G     S   CY CG  GH +R+C
Sbjct:    3 QKACYVCGKIGHLAEDCDSERLCYNCNKPGHVQTDCTMPRTVEFKQ---CYNCGETGHVRSECTVQ---------RCFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKDCMKEDG----ISGLKCYTCGQAGHMSRDC 131          
BLAST of DY257336 vs. ExPASy Swiss-Prot
Match: ZCH13_HUMAN (Zinc finger CCHC domain-containing protein 13 OS=Homo sapiens GN=ZCCHC13 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.454e-12
Identity = 44/139 (31.65%), Postives = 61/139 (43.88%), Query Frame = 1
Query:   25 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGLACARSR 441
            TCY CGE G  A NC           + G++            C+ C + GH AKDC D  +   +  Q C  CG  GH    C      D  KE +CY C   GH+           +V C+RCG++GH  + C+++R
Sbjct:   46 TCYCCGESGRNAKNC----------VLLGNI------------CYNCGRSGHIAKDCKDPKR---ERRQHCYTCGRLGHLARDC------DRQKEQKCYSCGKLGHI------QKDCAQVKCYRCGEIGHVAINCSKAR 147          
The following BLAST results are available for this feature:
BLAST of DY257336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
HEXP_LEIMA3.123e-2333.17DNA-binding protein HEXBP OS=Leishmania major GN=H... [more]
CNBP_CHICK1.713e-2131.69Cellular nucleic acid-binding protein OS=Gallus ga... [more]
CNBP_BOVIN3.817e-2132.04Cellular nucleic acid-binding protein OS=Bos tauru... [more]
CNBP_RAT2.474e-2030.85Cellular nucleic acid-binding protein OS=Rattus no... [more]
CNBP_PONAB2.474e-2030.85Cellular nucleic acid-binding protein OS=Pongo abe... [more]
CNBP_HUMAN2.474e-2030.85Cellular nucleic acid-binding protein OS=Homo sapi... [more]
CNBP_MOUSE3.231e-2030.69Cellular nucleic acid-binding protein OS=Mus muscu... [more]
BYR3_SCHPO4.666e-1930.64Cellular nucleic acid-binding protein homolog OS=S... [more]
GIS2_YEAST2.029e-1426.99Zinc finger protein GIS2 OS=Saccharomyces cerevisi... [more]
ZCH13_HUMAN1.454e-1231.65Zinc finger CCHC domain-containing protein 13 OS=H... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2AC01FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257336 ID=DY257336; Name=DY257336; organism=Citrus sinensis; type=EST; length=1136bp
GATCCTCCAGATCGCGGGTGGCAAACGTGCTATAATTGTGGCGAAGAGGG
GCATATGGCGGTGAACTGTAGATCTGCTGTCAAGCGGAAGAAACCTTGTT
TTGTTTGTGGGAGTTTGGAACATGGTGTCAGGCAATGTTCCAAGGCACAA
GATTGCTTCATTTGCAAAAAAGGTGGTCACCGTGCGAAAGATTGTCCAGA
TAAGCACAAGAGTGGCTTCCAGAATGCTCAAGTGTGTTTAAAATGTGGAG
ATTCTGGGCATGATATGTTTTCTTGTAGGAACAGTTATTCTCTCGATGAC
CTCAAGGAAGTACAATGTTACATCTGCAGGTGTTTTGGCCATTTGTGTTG
CGTTAATATCAGTGATGCGGTTCCAGGAGAGGTTTCTTGTTTCAGATGTG
GTCAATTAGGTCACACTGGTTTGGCATGCGCTAGGTCTCGTGGTGAAACT
GTAGAAGCGTCACCTAGTTCATGCTACAAGTGTGGTGCAGAAGGGCATTT
TGCACGTGAATGTGTGAGTTCTTCCAAGGTTCGCAAGAGGAATATTGACG
CATCAACTCCAACATTCAGACCTCATAGAGAAAATAAAGACCACTCGGGA
ATTAAGTCTGCGCCTCATGATCTTGGTAAAGTGCATAAAAGGAAGAAAAC
CCAGCATGAAGAAAGAGGCATTATGACATCTCGAAAATCAAAACAGAGAG
GTGGTTGGATAACAGACGATCCTGGAGATATCTCCTATGGGAAGCCGAAG
AGGAACCATTGGAGGTCTCCGGGAACACCATCTAGTAAGGCTCATAAAAT
TTCAGCTATAACCTCTGGAGCCATTTTTTCAGTCCTCAGTCCTCCATAAA
GAGGAATTCTCATCATAAATTTTCACCATCAAGGTTCCACAACTCTGGGA
GTGAAGGGAAAAGGAGAAGTTAAGAATTGGGGGGAAAGAACCTTTTATTT
TTTTTCCCACTAATAATTTTAAGGGCCTTTTGGTGGGGACCAAAACGGTG
AAAGGGGGCGCCTGCTTCCGGCCCCCCCCGGTGAATTTTGTAACCCTCCT
TGTAACCCTTGAAGGTATCCCCCCACGAAATTTTAGTTTTTTACATAATT
TCTTTTTATTAATATTTTTTTTTTTACCTTTTTTTT
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