DY257335

Overview
NameDY257335
Unique NameDY257335
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1227
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY257335_ssr46 microsatellite DY257335_ssr46:46..57. BLAST: Citrus ESTs to Prunus persica proteins V1
DY257335_ssr94 microsatellite DY257335_ssr94:94..108. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY257335 vs. ExPASy Swiss-Prot
Match: NFYC1_ARATH (Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana GN=NFYC1 PE=1 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 2.719e-84
Identity = 159/192 (82.81%), Postives = 163/192 (84.90%), Query Frame = 1
Query:  115 MFWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGG--MVGATASGVPYYYPPMGQPTGTAGPGGMMIGRPAVDPTGVYVQPPSQAWQSVWQTPAXXXXXXXXXXXXXXXPANLDGQG 684
            +FW+YQRQEIEQ NDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAA LGG  +V  TASGVPYYYPPMGQP   AGPGGMMIGRPA+DP GVYVQPPSQAWQSVWQT                   NLDGQG
Sbjct:   46 LFWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAVLGGGMVVAPTASGVPYYYPPMGQP---AGPGGMMIGRPAMDPNGVYVQPPSQAWQSVWQTSTGTGDDVSYGSGGSSGQGNLDGQG 234          
BLAST of DY257335 vs. ExPASy Swiss-Prot
Match: NFYC4_ARATH (Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana GN=NFYC4 PE=2 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 1.824e-80
Identity = 154/195 (78.97%), Postives = 159/195 (81.54%), Query Frame = 1
Query:  115 MFWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDE-----AAGLGGMVGATASGVPYYYPPMGQPTGTAGPGGMMIGRPAVDPTGVYVQPPSQAWQSVWQTPAXXXXXXXXXXXXXXXPANLDGQG 684
            MFW+YQRQEIEQ NDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPR+EIK+E     A G GGMV   ASGVPYYYPPMGQP   A PGGMMIGRPA+DP+GVY QPPSQAWQSVWQ  A                 NLD QG
Sbjct:   59 MFWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREEIKEEEDAASALGGGGMVAPAASGVPYYYPPMGQP---AVPGGMMIGRPAMDPSGVYAQPPSQAWQSVWQNSAGGGDDVSYGSGGSSGHGNLDSQG 250          
BLAST of DY257335 vs. ExPASy Swiss-Prot
Match: NFYC3_ARATH (Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana GN=NFYC3 PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 5.530e-53
Identity = 106/165 (64.24%), Postives = 123/165 (74.55%), Query Frame = 1
Query:  118 FWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGGMVGATASGVPYYYPPMGQPTGTAGPGGMMIGRPAVDPTGVYVQPPSQAWQSVWQTP 612
            FW  Q +EIE+  DFKNH LPLARIKKIMKADEDVRMISAEAP++FA+ACE+FILELT+RSW H EENKRRTLQKNDIAAA+TRTDIFDFLVDIVPR++++DE  G  G   ATA+G PY Y P G  T   G  GM++G P   P   Y+  P      +WQ P
Sbjct:   52 FWETQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEVLGGVGAEAATAAGYPYGYLPPG--TAPIGNPGMVMGNPGAYPPNPYMGQP------MWQQP 208          
BLAST of DY257335 vs. ExPASy Swiss-Prot
Match: NFYC9_ARATH (Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana GN=NFYC9 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 4.382e-50
Identity = 106/169 (62.72%), Postives = 123/169 (72.78%), Query Frame = 1
Query:  118 FWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAG---LGGMVGATASGVPYYYPPMGQPTGTAGPGGMMIGRPAVDPTGVYVQPPSQAWQSVWQTPA 615
            FW  Q +EIE+  DFKNH LPLARIKKIMKADEDVRMISAEAP++FA+ACE+FILELT+RSW H EENKRRTLQKNDIAAA+TRTDIFDFLVDIVPR++++DE  G    G +  A A+G PY Y P G  T   G  GM++G P     G Y   P    Q +WQ  A
Sbjct:   62 FWENQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEVLGSIPRGTVPEAAAAGYPYGYLPAG--TAPIGNPGMVMGNPG----GAYPPNPYMG-QPMWQQQA 223          
BLAST of DY257335 vs. ExPASy Swiss-Prot
Match: NFYC2_ARATH (Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana GN=NFYC2 PE=1 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 3.140e-48
Identity = 91/124 (73.39%), Postives = 106/124 (85.48%), Query Frame = 1
Query:  115 MFWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGL-GGMVGATASGVPYYY 483
            MFW+ Q QEIE   DFKNH LPLARIKKIMKADEDVRMISAEAP++FAKACE+FILELT+R+W+H EENKRRTLQKNDIAAAI+RTD+FDFLVDI+PRDE+K+E  G+  G + +     PYYY
Sbjct:   57 MFWANQMQEIEHTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRAWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGVTKGTIPSVVGSPPYYY 180          
BLAST of DY257335 vs. ExPASy Swiss-Prot
Match: NFYC6_ARATH (Nuclear transcription factor Y subunit C-6 OS=Arabidopsis thaliana GN=NFYC6 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.910e-37
Identity = 86/158 (54.43%), Postives = 110/158 (69.62%), Query Frame = 1
Query:  124 SYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDE-IKDEAAGLGGMVGATASGVP-YYYPPMGQPTGTAGPGGMMIGRPAVDPTGVYVQPPSQAW 591
            +Y  +++E  +DFKN QLPLARIKKIMKAD DV M+SAEAPI+FAKACE+FI++LT+RSWL AEENKR TLQK+DI+ A+  +  +DFL+D+VP+DE I     G   M      GVP YYYPP           G+++G P V  +G+Y   PSQAW
Sbjct:   38 NYWIEQMETVSDFKNRQLPLARIKKIMKADPDVHMVSAEAPIIFAKACEMFIVDLTMRSWLKAEENKRHTLQKSDISNAVASSFTYDFLLDVVPKDESIATADPGFVAMPHPDGGGVPQYYYPP-----------GVVMGTPMVG-SGMYA--PSQAW 181          
BLAST of DY257335 vs. ExPASy Swiss-Prot
Match: NFYC_RAT (Nuclear transcription factor Y subunit gamma OS=Rattus norvegicus GN=Nfyc PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 3.371e-34
Identity = 78/138 (56.52%), Postives = 94/138 (68.12%), Query Frame = 1
Query:  118 FWSYQRQEIEQ--ANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGGMVGAT-ASGVPYYYPPMGQPTGTAGPG 522
            FW    +EI      DF+  +LPLARIKKIMK DEDV+MISAEAP+LFAKA ++FI ELT+R+W+H E+NKRRTLQ+NDIA AIT+ D FDFL+DIVPRDE+K            T A  V YY+    QPT     G
Sbjct:   22 FWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQG 159          
BLAST of DY257335 vs. ExPASy Swiss-Prot
Match: NFYC_MOUSE (Nuclear transcription factor Y subunit gamma OS=Mus musculus GN=Nfyc PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 3.371e-34
Identity = 78/138 (56.52%), Postives = 94/138 (68.12%), Query Frame = 1
Query:  118 FWSYQRQEIEQ--ANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGGMVGAT-ASGVPYYYPPMGQPTGTAGPG 522
            FW    +EI      DF+  +LPLARIKKIMK DEDV+MISAEAP+LFAKA ++FI ELT+R+W+H E+NKRRTLQ+NDIA AIT+ D FDFL+DIVPRDE+K            T A  V YY+    QPT     G
Sbjct:   22 FWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQG 159          
BLAST of DY257335 vs. ExPASy Swiss-Prot
Match: NFYC_HUMAN (Nuclear transcription factor Y subunit gamma OS=Homo sapiens GN=NFYC PE=1 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 3.371e-34
Identity = 78/138 (56.52%), Postives = 94/138 (68.12%), Query Frame = 1
Query:  118 FWSYQRQEIEQ--ANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGGMVGAT-ASGVPYYYPPMGQPTGTAGPG 522
            FW    +EI      DF+  +LPLARIKKIMK DEDV+MISAEAP+LFAKA ++FI ELT+R+W+H E+NKRRTLQ+NDIA AIT+ D FDFL+DIVPRDE+K            T A  V YY+    QPT     G
Sbjct:   22 FWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQG 159          
BLAST of DY257335 vs. ExPASy Swiss-Prot
Match: NFYC_BOVIN (Nuclear transcription factor Y subunit gamma OS=Bos taurus GN=NFYC PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 3.371e-34
Identity = 78/138 (56.52%), Postives = 94/138 (68.12%), Query Frame = 1
Query:  118 FWSYQRQEIEQ--ANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGGMVGAT-ASGVPYYYPPMGQPTGTAGPG 522
            FW    +EI      DF+  +LPLARIKKIMK DEDV+MISAEAP+LFAKA ++FI ELT+R+W+H E+NKRRTLQ+NDIA AIT+ D FDFL+DIVPRDE+K            T A  V YY+    QPT     G
Sbjct:   22 FWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQG 159          
The following BLAST results are available for this feature:
BLAST of DY257335 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
NFYC1_ARATH2.719e-8482.81Nuclear transcription factor Y subunit C-1 OS=Arab... [more]
NFYC4_ARATH1.824e-8078.97Nuclear transcription factor Y subunit C-4 OS=Arab... [more]
NFYC3_ARATH5.530e-5364.24Nuclear transcription factor Y subunit C-3 OS=Arab... [more]
NFYC9_ARATH4.382e-5062.72Nuclear transcription factor Y subunit C-9 OS=Arab... [more]
NFYC2_ARATH3.140e-4873.39Nuclear transcription factor Y subunit C-2 OS=Arab... [more]
NFYC6_ARATH1.910e-3754.43Nuclear transcription factor Y subunit C-6 OS=Arab... [more]
NFYC_RAT3.371e-3456.52Nuclear transcription factor Y subunit gamma OS=Ra... [more]
NFYC_MOUSE3.371e-3456.52Nuclear transcription factor Y subunit gamma OS=Mu... [more]
NFYC_HUMAN3.371e-3456.52Nuclear transcription factor Y subunit gamma OS=Ho... [more]
NFYC_BOVIN3.371e-3456.52Nuclear transcription factor Y subunit gamma OS=Bo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2AB12FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257335 ID=DY257335; Name=DY257335; organism=Citrus sinensis; type=EST; length=1227bp
GAATCGTATGCGTCTTTCCACCACCTTCCACCCCACCCGCCCTCCGCTGC
TGCTGCTGCCACCGCAACGGCGCCGTTTCATCACCTAATCCAACAGCAGC
AGCAGCAGCTCCAAATGTTCTGGTCCTACCAGCGGCAAGAAATCGAACAA
GCGAACGACTTCAAGAACCACCAGCTGCCGCTCGCCCGCATCAAGAAAAT
CATGAAGGCCGACGAGGACGTTCGCATGATCTCCGCCGAGGCCCCGATTC
TGTTCGCCAAGGCCTGCGAGTTGTTCATCCTCGAGCTCACGATCCGCTCG
TGGCTCCACGCCGAGGAGAACAAGCGCAGGACTCTACAGAAGAACGACAT
CGCGGCCGCCATCACCAGGACCGACATCTTCGACTTCTTGGTCGATATTG
TGCCTAGGGATGAGATTAAGGACGAGGCTGCCGGCTTGGGCGGCATGGTG
GGGGCCACTGCCAGTGGGGTTCCGTATTATTATCCTCCAATGGGGCAGCC
CACTGGGACTGCTGGCCCCGGTGGGATGATGATTGGCCGGCCGGCTGTCG
ATCCTACTGGTGTTTACGTGCAGCCGCCTAGTCAGGCTTGGCAGTCCGTT
TGGCAGACGCCCGCGGGGACTGGGGACGACGGCTCTTATGGCAGTGGTGG
GAGCGGGGGACCTGCCAATCTTGATGGTCAAGGCTAGGTTAAACAAAACA
ACTAATATGCAAATGTTATGCTGCTGTGTGATGCAATAAAAGGGATTGGA
ACCCCTGCCGAAGCACATGGAATTTTGCTTGCTCTGATTTAGAGAACCCT
GTCTGTAATGGTTAAGAAAACAGGTCTAAGGTGAGAATTTAATCGGAACT
CTGGGGATTTTTTACCTGGATTCTGGACAAAAACTGGACCGGCAGGGAAT
TCCCAAATTATATATAGGGGAATTTGGGATTATGGAAAAAAAAAAAAAAA
AAAAAAAAACACCCCTTTTTCCGGGACAAGATTGCTATTTAAAAAAGGCT
GCCTATTCATTTTGGTTCAACAAAAAAGGCTCCACACCGTTCAAAAAACA
AACCATTTTTTTCCACCCCACTTTAAACACCCCGTTTACGAGAACAATAT
TTATTTTGGTCCTAAATGTGGTTTCTCTCCGGCAACCCCCGCGTGTCGCG
GGCATCATCCACATCTACTTCGTGATGTTTTCTTATAAACTGACCCTATT
ATATTAAAATACATACTACAGTTGCCT
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