CN191231

Overview
NameCN191231
Unique NameCN191231
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN191231 vs. ExPASy Swiss-Prot
Match: ISPH_MICAN (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Microcystis aeruginosa (strain NIES-843) GN=ispH PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 5.022e-58
Identity = 100/168 (59.52%), Postives = 127/168 (75.60%), Query Frame = 2
Query:  284 DAKQFRHNLMRSDKYNRRGFGHKEETTELMNQQYSSDIIKKLKDNGYECTWGNATVKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPPINKRLEEMEVKNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCPWVSKVWTTVEK 787
            D K F+  L +SD YNR+GFGHKEE  + M  +Y SD+I+++++N Y    G+ T+ LA+A+GFCWGVERAV +AYE R+ FP E+IWIT+EI+H+P +N+RL  M V  IPVE G+K F VV  GDVV+LPAFGA+V EM  LNDK   IVDTTCPWVSKVW +VEK
Sbjct:    2 DTKSFKRTLQQSDNYNRKGFGHKEEVMDAMTNEYQSDLIQEIRENNYRLQRGDVTIYLAQAFGFCWGVERAVAMAYETRQHFPQERIWITNEIIHNPSVNQRLRSMAVGFIPVENGQKDFTVVESGDVVILPAFGASVSEMQILNDKGCMIVDTTCPWVSKVWNSVEK 169          
BLAST of CN191231 vs. ExPASy Swiss-Prot
Match: ISPH_ACAM1 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Acaryochloris marina (strain MBIC 11017) GN=ispH PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 9.471e-57
Identity = 96/169 (56.80%), Postives = 137/169 (81.07%), Query Frame = 2
Query:  284 DAKQFRHNLMRSDKYNRRGFGHKEETTELMNQQYSSDIIKKLKDNGYECTWGNATVKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPPINKRLEEMEVKNIPVE-EGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCPWVSKVWTTVEK 787
            D K F+ +L +S++Y+R+GFGH+EE T L+  +Y+S +I+++++NGY    G+ T+ LAEA+GFCWGVERA+ +AYE R+QFP E+IWIT+EI+H+P +NK L +M+V+ IPV+ +G+K F VV + DVV+LPAFGA+V+EM  L+DK   I+DTTCPWVSKVWT+VEK
Sbjct:    2 DTKAFKRSLHKSEQYHRKGFGHEEEVTNLLQSEYNSKLIQQIRNNGYRLQQGDVTIHLAEAFGFCWGVERAIALAYETRRQFPQERIWITNEIIHNPSVNKNLRDMKVEFIPVQPDGQKDFTVVGQNDVVILPAFGASVQEMQLLHDKGCTIMDTTCPWVSKVWTSVEK 170          
BLAST of CN191231 vs. ExPASy Swiss-Prot
Match: ISPH_SYNPX (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain WH8102) GN=ispH PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.756e-56
Identity = 99/168 (58.93%), Postives = 126/168 (75.00%), Query Frame = 2
Query:  284 DAKQFRHNLMRSDKYNRRGFGHKEETTELMNQQYSSDIIKKLKDNGYECTWGNATVKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPPINKRLEEMEVKNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCPWVSKVWTTVEK 787
            D   F+ +L  S++YNRRGFG  EE  E + Q Y S +I  ++DNGY+ + G  TV+LAEA+GFCWGVERAV +AYE RK +P E++WIT+EI+H+P +N  L EM+V+ IPVE+G K F  V  GDVV+LPAFGA V+EM  LN++   IVDTTCPWVSKVWTTVEK
Sbjct:    2 DTHAFKRSLHHSERYNRRGFGRAEEVAESLEQAYQSGLIGTIRDNGYKLSHGRLTVRLAEAFGFCWGVERAVAMAYETRKHYPAERLWITNEIIHNPSVNDHLREMDVQFIPVEQGVKDFSGVTSGDVVILPAFGATVQEMQLLNERGCHIVDTTCPWVSKVWTTVEK 169          
BLAST of CN191231 vs. ExPASy Swiss-Prot
Match: ISPH_SYNP2 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ispH PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.368e-55
Identity = 98/168 (58.33%), Postives = 125/168 (74.40%), Query Frame = 2
Query:  284 DAKQFRHNLMRSDKYNRRGFGHKEETTELMNQQYSSDIIKKLKDNGYECTWGNATVKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPPINKRLEEMEVKNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCPWVSKVWTTVEK 787
            D K F+ +L  S+ Y R+GFGHK+E   +M  +Y S +I++++DN YE T G+ T+ LAEA+GFCWGVERAV +AYE RK FP EKIW+T+EI+H+P +N RL+EM V  I V +G K F  V  GDVV+LPAFGA V+EM  LND+   IVDTTCPWVSKVW +VEK
Sbjct:    2 DTKAFKRSLNHSENYYRQGFGHKDEVAGMMTSEYQSSLIQEIRDNNYELTRGDVTIYLAEAFGFCWGVERAVAMAYETRKHFPTEKIWVTNEIIHNPSVNNRLKEMNVHFIEVVDGDKDFSGVANGDVVILPAFGATVQEMQLLNDRGCTIVDTTCPWVSKVWNSVEK 169          
BLAST of CN191231 vs. ExPASy Swiss-Prot
Match: ISPH_SYNP6 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ispH PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.786e-55
Identity = 97/168 (57.74%), Postives = 126/168 (75.00%), Query Frame = 2
Query:  284 DAKQFRHNLMRSDKYNRRGFGHKEETTELMNQQYSSDIIKKLKDNGYECTWGNATVKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPPINKRLEEMEVKNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCPWVSKVWTTVEK 787
            D K F+  L +SD+YNR+GFG   + +  +   Y SD+I+ L+ NGY    G  T++LAEA+GFCWGVERAV IAYE R+ FP E+IWIT+EI+H+P +N+ L EM V+ IP E G+K F VV++GDVV+LPAFGA+V+EM  L++K   IVDTTCPWVSKVW TVEK
Sbjct:    2 DTKAFKRALHQSDRYNRKGFGKTTDVSGALESAYQSDLIQSLRQNGYRLQRGEITIRLAEAFGFCWGVERAVAIAYETRQHFPQERIWITNEIIHNPSVNQHLREMSVEFIPCERGEKDFSVVDRGDVVILPAFGASVQEMQLLDEKGCHIVDTTCPWVSKVWNTVEK 169          
BLAST of CN191231 vs. ExPASy Swiss-Prot
Match: ISPH_SYNE7 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus elongatus (strain PCC 7942) GN=ispH PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.786e-55
Identity = 97/168 (57.74%), Postives = 126/168 (75.00%), Query Frame = 2
Query:  284 DAKQFRHNLMRSDKYNRRGFGHKEETTELMNQQYSSDIIKKLKDNGYECTWGNATVKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPPINKRLEEMEVKNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCPWVSKVWTTVEK 787
            D K F+  L +SD+YNR+GFG   + +  +   Y SD+I+ L+ NGY    G  T++LAEA+GFCWGVERAV IAYE R+ FP E+IWIT+EI+H+P +N+ L EM V+ IP E G+K F VV++GDVV+LPAFGA+V+EM  L++K   IVDTTCPWVSKVW TVEK
Sbjct:    2 DTKAFKRALHQSDRYNRKGFGKTTDVSGALESAYQSDLIQSLRQNGYRLQRGEITIRLAEAFGFCWGVERAVAIAYETRQHFPQERIWITNEIIHNPSVNQHLREMSVEFIPCERGEKDFSVVDRGDVVILPAFGASVQEMQLLDEKGCHIVDTTCPWVSKVWNTVEK 169          
BLAST of CN191231 vs. ExPASy Swiss-Prot
Match: ISPH_CYAA5 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain ATCC 51142) GN=ispH PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.333e-55
Identity = 99/168 (58.93%), Postives = 126/168 (75.00%), Query Frame = 2
Query:  284 DAKQFRHNLMRSDKYNRRGFGHKEETTELMNQQYSSDIIKKLKDNGYECTWGNATVKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPPINKRLEEMEVKNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCPWVSKVWTTVEK 787
            D K F+ +L +S+ Y+R+GFGH+ E    MN +Y S +I+K+++N Y+   G+ T+KLAEA+GFCWGVERAV +AYE R+ FP EKIWIT+EI+H+P +N+RL EM V  I V  G K F VV  GDVV+LPAFGA+V EM  LNDK   IVDTTCPWVSKVW +VEK
Sbjct:    2 DTKAFKRSLQQSNNYHRKGFGHETEVMGTMNTEYQSSLIQKIRENNYQWQEGDVTIKLAEAFGFCWGVERAVAMAYETRQHFPQEKIWITNEIIHNPSVNQRLLEMNVGFIEVINGSKDFSVVEAGDVVILPAFGASVTEMQLLNDKGCTIVDTTCPWVSKVWNSVEK 169          
BLAST of CN191231 vs. ExPASy Swiss-Prot
Match: ISPH_ANAVT (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ispH PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.979e-55
Identity = 94/168 (55.95%), Postives = 126/168 (75.00%), Query Frame = 2
Query:  284 DAKQFRHNLMRSDKYNRRGFGHKEETTELMNQQYSSDIIKKLKDNGYECTWGNATVKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPPINKRLEEMEVKNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCPWVSKVWTTVEK 787
            D K F+  L  S+ YNR+GFGH+ E    +  +Y S +I++++D  Y    G+ T++LA+A+GFCWGVERAV +AYE RK FP E+IWIT+EI+H+P +N+R++EM+V  IPVE G K F VV   DVV+LPAFGA+V+EM  L++K  +IVDTTCPWVSKVW TVEK
Sbjct:    2 DTKTFKRTLQHSENYNRKGFGHQAEVATQLQSEYQSSLIQEIRDRNYTLQRGDVTIRLAQAFGFCWGVERAVAMAYETRKHFPTERIWITNEIIHNPSVNQRMQEMQVGFIPVEAGNKDFSVVGNNDVVILPAFGASVQEMQLLSEKGCKIVDTTCPWVSKVWNTVEK 169          
BLAST of CN191231 vs. ExPASy Swiss-Prot
Match: ISPH_ANASP (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Anabaena sp. (strain PCC 7120) GN=ispH PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.979e-55
Identity = 94/168 (55.95%), Postives = 126/168 (75.00%), Query Frame = 2
Query:  284 DAKQFRHNLMRSDKYNRRGFGHKEETTELMNQQYSSDIIKKLKDNGYECTWGNATVKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPPINKRLEEMEVKNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCPWVSKVWTTVEK 787
            D K F+  L  S+ YNR+GFGH+ E    +  +Y S +I++++D  Y    G+ T++LA+A+GFCWGVERAV +AYE RK FP E+IWIT+EI+H+P +N+R++EM+V  IPVE G K F VV   DVV+LPAFGA+V+EM  L++K  +IVDTTCPWVSKVW TVEK
Sbjct:    2 DTKTFKRTLQHSENYNRKGFGHQAEVATQLQSEYQSSLIQEIRDRNYTLQRGDVTIRLAQAFGFCWGVERAVAMAYETRKHFPTERIWITNEIIHNPSVNQRMQEMQVGFIPVEAGNKDFSVVGNNDVVILPAFGASVQEMQLLSEKGCKIVDTTCPWVSKVWNTVEK 169          
BLAST of CN191231 vs. ExPASy Swiss-Prot
Match: ISPH_SYNSC (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain CC9605) GN=ispH PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 5.197e-55
Identity = 97/168 (57.74%), Postives = 122/168 (72.62%), Query Frame = 2
Query:  284 DAKQFRHNLMRSDKYNRRGFGHKEETTELMNQQYSSDIIKKLKDNGYECTWGNATVKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPPINKRLEEMEVKNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCPWVSKVWTTVEK 787
            D   F+ +L  S++YNRRGFG  EE  E + Q Y S +I  ++DNGY    G   V+LAEA+GFCWGVERAV +AYE RK +P E++WIT+EI+H+P +N  L EM+V+ IPVE+G K F  V  GDVV+LPAFGA V+EM  LN++   IVDTTCPWVSKVW TVEK
Sbjct:    2 DTHAFKRSLHHSERYNRRGFGRAEEVAESLEQAYQSGLIGTIRDNGYRLEHGRLNVRLAEAFGFCWGVERAVAMAYETRKHYPSERLWITNEIIHNPSVNDHLREMDVQFIPVEQGVKDFSGVTSGDVVILPAFGATVQEMQLLNERGCHIVDTTCPWVSKVWNTVEK 169          
The following BLAST results are available for this feature:
BLAST of CN191231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
ISPH_MICAN5.022e-5859.524-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_ACAM19.471e-5756.804-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNPX2.756e-5658.934-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNP21.368e-5558.334-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNP61.786e-5557.744-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNE71.786e-5557.744-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CYAA52.333e-5558.934-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_ANAVT3.979e-5555.954-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_ANASP3.979e-5555.954-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNSC5.197e-5557.744-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0004M22_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0004M22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191231 ID=CN191231; Name=CN191231; organism=Citrus sinensis; type=EST; length=789bp
GCGTGCAGGAATTACGGCACGAGGAAGACAAGTCTATTTTGGAGGAAAAG
GATTATCAATTAACTGGACGCAAAGCGCGAAAACAATGGCTCTATATGGT
TTGCCCATGTGCATGACTGGCGGGGTTTTGGCTCATGAAATGATGCATGC
ATGGTTTGGAATTCAAGCTTCGCGCCATAATAATCGCGCCAGAGTGCTGG
CTCTCCGGCGCCGGCAGCCTGTGAACGTCAGAAGCTCCGGTCAAGAATTG
CCGAGCTCGGCGGTGGCTGTTGGTGCCGAATTTGACGCGAAACAATTTCG
TCATAACCTGATGAGAAGTGATAAGTATAATCGGAGAGGATTTGGCCACA
AAGAAGAGACTACGGAGCTCATGAATCAACAGTACTCAAGTGATATTATA
AAGAAATTGAAGGACAATGGATACGAGTGTACGTGGGGAAATGCTACGGT
GAAGCTGGCCGAAGCATATGGCTTTTGCTGGGGAGTTGAGCGTGCTGTGC
AGATTGCTTATGAAGCAAGAAAACAGTTTCCCGATGAGAAGATCTGGATC
ACCAGTGAAATCCTTCACAGTCCACCCATCAATAAGCGGTTGGAGGAGAT
GGAAGTTAAAAATATACCTGTTGAGGAAGGAAAGAAGCAATTTGATGTGG
TAAATAAGGGTGATGTTGTGGTTTTGCCTGCATTTGGGGCTGCAGTTGAA
GAAATGGTGACTCTGAATGACAAGAATGTACAGATCGTTGATACAACTTG
CCCTTGGGTGTCGAAGGTCTGGACTACTGTTGAGAAGCA
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