GR312980

Overview
NameGR312980
Unique NameGR312980
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
GR312980_ssr345 microsatellite GR312980_ssr345:345..356. BLAST: Citrus ESTs to Prunus persica proteins V1
GR312980_ssr53 microsatellite GR312980_ssr53:53..64. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13852 contig Csv1_Contig13852:350..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME2_CITSI (Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.002e-47
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            SRTVYIKTFLDSLINPAGWMEWSGDFAL+TLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL
Sbjct:  422 SRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 510          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME17_ARATH (Probable pectinesterase/pectinesterase inhibitor 17 OS=Arabidopsis thaliana GN=PME17 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 1.230e-29
Identity = 58/89 (65.17%), Postives = 74/89 (83.15%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            SRTV++KT LDSLI+P GW+EW G+FAL TL+YAE+ NTGPG+ST+ RV W G+ VL S S+ S+FTVG F+AG SW+P ++VPFTSGL
Sbjct:  424 SRTVFMKTSLDSLIDPRGWLEWDGNFALKTLFYAEFQNTGPGASTSGRVTWPGFRVLGSASEASKFTVGTFLAGGSWIP-SSVPFTSGL 511          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME32_ARATH (Probable pectinesterase/pectinesterase inhibitor 32 OS=Arabidopsis thaliana GN=PME32 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.816e-28
Identity = 50/89 (56.18%), Postives = 67/89 (75.28%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            SRTV+++ ++   INP GW+EW+G+FALDTLYY EYMN+GPG+S   RVKW GYHVL + ++ + FTV   I GN WLP+T + F +GL
Sbjct:  437 SRTVFMQNYMSDAINPVGWLEWNGNFALDTLYYGEYMNSGPGASLDRRVKWPGYHVLNTSAEANNFTVSQLIQGNLWLPSTGITFIAGL 525          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME36_ARATH (Probable pectinesterase/pectinesterase inhibitor 36 OS=Arabidopsis thaliana GN=PME36 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.565e-27
Identity = 51/89 (57.30%), Postives = 65/89 (73.03%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            SRTV++KT +D LI+P GW EWSG +AL TLYY E+MNTG G+ T  RV W G+HVL    + S FTV  FI G+SW+P T VPF++G+
Sbjct:  431 SRTVFLKTDIDELIDPRGWREWSGSYALSTLYYGEFMNTGAGAGTGRRVNWPGFHVLRGEEEASPFTVSRFIQGDSWIPITGVPFSAGV 519          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME1_SOLLC (Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9 PE=1 SV=5)

HSP 1 Score: 120.553 bits (301), Expect = 2.565e-27
Identity = 52/89 (58.43%), Postives = 64/89 (71.91%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            SRTV ++++L  LINPAGW EW GDFAL TLYY E+MN GPG+ T+ RVKW GYHV+T P++   FTV   I G SWL +T V +  GL
Sbjct:  456 SRTVVMESYLGGLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRSTGVAYVDGL 544          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME_ACTDE (Pectinesterase OS=Actinidia deliciosa PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.350e-27
Identity = 53/84 (63.10%), Postives = 67/84 (79.76%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVP 254
            SRTV++ + ++SLI+PAGW+EWSGDFAL TLYY EY NTGPGS+T  RV W GY V T+ ++V QFTVGNFI G+ WL + N+P
Sbjct:  232 SRTVFLLSQMESLIDPAGWLEWSGDFALTTLYYREYKNTGPGSNTTARVTWPGYAVTTNETEVIQFTVGNFIQGSQWLTSYNIP 315          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME22_SOLLC (Pectinesterase 2.2 OS=Solanum lycopersicum GN=PME2.2 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.463e-27
Identity = 51/89 (57.30%), Postives = 63/89 (70.79%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            SRTV ++++L  LINPAGW EW GDFAL TLYY E+MN GPG+ T+ RVKW GYH +T P++   FTV   I G SWL +T V +  GL
Sbjct:  460 SRTVVMESYLGGLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHCITDPAEAMPFTVAKLIQGGSWLRSTGVAYVDGL 548          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME59_ARATH (Probable pectinesterase/pectinesterase inhibitor 59 OS=Arabidopsis thaliana GN=PME59 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.747e-27
Identity = 54/91 (59.34%), Postives = 66/91 (72.53%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEW--SGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            SRTV ++T+LD++++P GW  W     F LDTL+YAEY NTGP SST  RV W+G+HVL   S  S FTVG FIAG +WLP T +PFTSGL
Sbjct:  446 SRTVVLQTYLDNVVSPVGWSPWIEGSVFGLDTLFYAEYKNTGPASSTRWRVSWKGFHVLGRASDASAFTVGKFIAGTAWLPRTGIPFTSGL 536          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME3_SOLLC (Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.273e-26
Identity = 50/89 (56.18%), Postives = 65/89 (73.03%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            SRTV ++++LD  I+P+GW EW GDFAL TLYY E+MN GPG+ T+ RVKW GYHV+T P++   FTV   I G SWL +T+V +  GL
Sbjct:  454 SRTVVMQSYLDGHIDPSGWFEWRGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPNEAMPFTVAELIQGGSWLNSTSVAYVEGL 542          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME21_SOLLC (Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2.1 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 1.273e-26
Identity = 50/89 (56.18%), Postives = 65/89 (73.03%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            SRTV ++++L  LI+P+GW EW GDFAL TLYY E+MN GPG+ T+ RVKW GYHV+T P++   FTV   I G SWL +T+V +  GL
Sbjct:  460 SRTVVMESYLGGLIDPSGWAEWHGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAEAMSFTVAKLIQGGSWLRSTDVAYVDGL 548          
The following BLAST results are available for this feature:
BLAST of GR312980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
PME2_CITSI1.002e-4798.88Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE... [more]
PME17_ARATH1.230e-2965.17Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME32_ARATH8.816e-2856.18Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME36_ARATH2.565e-2757.30Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME1_SOLLC2.565e-2758.43Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9... [more]
PME_ACTDE3.350e-2763.10Pectinesterase OS=Actinidia deliciosa PE=1 SV=1[more]
PME22_SOLLC7.463e-2757.30Pectinesterase 2.2 OS=Solanum lycopersicum GN=PME2... [more]
PME59_ARATH9.747e-2759.34Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME3_SOLLC1.273e-2656.18Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 P... [more]
PME21_SOLLC1.273e-2656.18Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2... [more]

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Properties
Property NameValue
Genbank descriptionC06057A03 RindPdigS Citrus sinensis cDNA clone N04A12, mRNA sequence.