GR312979

Overview
NameGR312979
Unique NameGR312979
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7528 contig Csv1_Contig7528:648..818. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GR312979 vs. ExPASy Swiss-Prot
Match: PIP21_ARATH (Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.037e-20
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = -2
Query:   22 STGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMV 171
            STG GLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMV
Sbjct:  166 STGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMV 215          
BLAST of GR312979 vs. ExPASy Swiss-Prot
Match: PIP26_MAIZE (Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.311e-20
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = -2
Query:   22 STGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMV 171
            STG GLAAEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMV
Sbjct:  170 STGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMV 219          
BLAST of GR312979 vs. ExPASy Swiss-Prot
Match: PIP24_ORYSJ (Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica GN=PIP2-4 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.311e-20
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = -2
Query:   22 STGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMV 171
            STG GLAAEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMV
Sbjct:  168 STGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMV 217          
BLAST of GR312979 vs. ExPASy Swiss-Prot
Match: PIP24_MAIZE (Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.148e-20
Identity = 48/50 (96.00%), Postives = 48/50 (96.00%), Query Frame = -2
Query:   22 STGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMV 171
            S G GLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMV
Sbjct:  170 SKGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMV 219          
BLAST of GR312979 vs. ExPASy Swiss-Prot
Match: PIP23_MAIZE (Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.148e-20
Identity = 48/50 (96.00%), Postives = 48/50 (96.00%), Query Frame = -2
Query:   22 STGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMV 171
            S G GLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMV
Sbjct:  171 SKGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMV 220          
BLAST of GR312979 vs. ExPASy Swiss-Prot
Match: PIP23_ARATH (Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.148e-20
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = -2
Query:   22 STGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMV 171
            +TG GLAAEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMV
Sbjct:  164 NTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMV 213          
BLAST of GR312979 vs. ExPASy Swiss-Prot
Match: PIP22_ARATH (Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 5.148e-20
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = -2
Query:   22 STGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMV 171
            +TG GLAAEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMV
Sbjct:  164 NTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMV 213          
BLAST of GR312979 vs. ExPASy Swiss-Prot
Match: PIP25_ORYSJ (Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica GN=PIP2-5 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.147e-19
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = -2
Query:   22 STGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMV 171
            S G GLAAEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMV
Sbjct:  165 SKGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMV 214          
BLAST of GR312979 vs. ExPASy Swiss-Prot
Match: PIP25_MAIZE (Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.147e-19
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = -2
Query:   22 STGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMV 171
            S G GLAAEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMV
Sbjct:  166 SKGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMV 215          
BLAST of GR312979 vs. ExPASy Swiss-Prot
Match: PIP23_ORYSJ (Probable aquaporin PIP2-3 OS=Oryza sativa subsp. japonica GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.147e-19
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = -2
Query:   22 STGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMV 171
            S G GLAAEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMV
Sbjct:  171 SKGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMV 220          
The following BLAST results are available for this feature:
BLAST of GR312979 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
PIP21_ARATH1.037e-2098.00Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1... [more]
PIP26_MAIZE2.311e-2096.00Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1[more]
PIP24_ORYSJ2.311e-2096.00Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica G... [more]
PIP24_MAIZE5.148e-2096.00Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1[more]
PIP23_MAIZE5.148e-2096.00Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1[more]
PIP23_ARATH5.148e-2094.00Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3... [more]
PIP22_ARATH5.148e-2094.00Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2... [more]
PIP25_ORYSJ1.147e-1994.00Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica G... [more]
PIP25_MAIZE1.147e-1994.00Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1[more]
PIP23_ORYSJ1.147e-1994.00Probable aquaporin PIP2-3 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionC06057A02 RindPdigS Citrus sinensis cDNA clone N03E03, mRNA sequence.