GO242683

Overview
NameGO242683
Unique NameGO242683
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242683 vs. ExPASy Swiss-Prot
Match: RL30_LUPLU (60S ribosomal protein L30 OS=Lupinus luteus GN=RPL30 PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 7.725e-50
Identity = 92/101 (91.09%), Postives = 99/101 (98.02%), Query Frame = 3
Query:  117 HESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDTIKSLPGD 419
            HESINNRLALVMKSGKYTLGYKTVL+SLR+SKGKLII++NNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKY+RV CLSI+DPGDSD IK+LPGD
Sbjct:   11 HESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIVDPGDSDIIKTLPGD 111          
BLAST of GO242683 vs. ExPASy Swiss-Prot
Match: RL30_EUPES (60S ribosomal protein L30 OS=Euphorbia esula GN=RPL30 PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 8.541e-49
Identity = 91/102 (89.22%), Postives = 98/102 (96.08%), Query Frame = 3
Query:  117 HESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDTIKSLPGDH 422
            HESIN+RLALVMKSGK+TLGYKTVL SLR++KGKLII++NNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRV CLSIID GDSD IKS+PGDH
Sbjct:   11 HESINSRLALVMKSGKFTLGYKTVLESLRSNKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVCCLSIIDAGDSDIIKSIPGDH 112          
BLAST of GO242683 vs. ExPASy Swiss-Prot
Match: RL302_ARATH (60S ribosomal protein L30-2 OS=Arabidopsis thaliana GN=RPL30B PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.239e-48
Identity = 89/101 (88.12%), Postives = 97/101 (96.04%), Query Frame = 3
Query:  117 HESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDTIKSLPGD 419
            HE IN+RLALVMKSGKYTLGYK+VL+SLR SKGKLI++S NCPPLR+SEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSI+DPGDSD IKS+PGD
Sbjct:   11 HEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIPGD 111          
BLAST of GO242683 vs. ExPASy Swiss-Prot
Match: RL301_ARATH (Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana GN=RPL30A PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 7.230e-48
Identity = 89/101 (88.12%), Postives = 98/101 (97.03%), Query Frame = 3
Query:  117 HESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDTIKSLPGD 419
            HE IN+RLALVMKSGKYTLGYK+VL+SLR+SKGKLI++S+NCPPLR+SEIEYYAMLAKVGVHHYN NNVDLGTACGKYFRVSCLSI+DPGDSD IKSLPGD
Sbjct:   11 HEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEIEYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLPGD 111          
BLAST of GO242683 vs. ExPASy Swiss-Prot
Match: RL303_ARATH (60S ribosomal protein L30-3 OS=Arabidopsis thaliana GN=RPL30C PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.611e-47
Identity = 88/101 (87.13%), Postives = 98/101 (97.03%), Query Frame = 3
Query:  117 HESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDTIKSLPGD 419
            HE IN+RLALVMKSGKYTLGYK+VL+SLR+SKGKLI++S+NCPPLR+SEIEYYAMLAKVGVH YNGNNVDLGTACGKYFRVSCLSI+DPGDSD IK+LPGD
Sbjct:   11 HEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEIEYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKTLPGD 111          
BLAST of GO242683 vs. ExPASy Swiss-Prot
Match: RL30_MAIZE (60S ribosomal protein L30 OS=Zea mays GN=RPL30 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 8.272e-44
Identity = 82/100 (82.00%), Postives = 93/100 (93.00%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDTIKSLPGD 419
            ++INN+L LVMKSGKYTLGYKTVLR+LR SK KL+I++NNCPPLRKSEIEYYAMLAKV VHH++GNNVDLGTACGKYFRV CLSIIDPGDSD IK+ PG+
Sbjct:   12 DNINNKLQLVMKSGKYTLGYKTVLRTLRNSKSKLVIIANNCPPLRKSEIEYYAMLAKVTVHHFHGNNVDLGTACGKYFRVCCLSIIDPGDSDIIKTTPGE 111          
BLAST of GO242683 vs. ExPASy Swiss-Prot
Match: RL30_ORYSJ (60S ribosomal protein L30 OS=Oryza sativa subsp. japonica GN=RPL30 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.560e-42
Identity = 81/96 (84.38%), Postives = 90/96 (93.75%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDTIKS 407
            ++INN+L LVMKSGKYTLGYKTVLR+LR SK KL+I+SNNCPPLRKSEIEYYAMLAKV VHH++GNNVDLGTACGKYFRV CLSIIDPGDSD IK+
Sbjct:   12 DNINNKLQLVMKSGKYTLGYKTVLRTLRNSKAKLVIISNNCPPLRKSEIEYYAMLAKVTVHHFHGNNVDLGTACGKYFRVCCLSIIDPGDSDIIKT 107          
BLAST of GO242683 vs. ExPASy Swiss-Prot
Match: RL30_WHEAT (60S ribosomal protein L30 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 1.907e-40
Identity = 77/96 (80.21%), Postives = 89/96 (92.71%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDTIKS 407
            E+INN+L LVMKSGKYTLGYKTVL++LR+S GKLIIL+NNCPPLRKSEIE YAMLAK+ VHH++GNNVDLGTACGKY+RV CLSI+DPGDSD I +
Sbjct:   12 ENINNKLQLVMKSGKYTLGYKTVLKTLRSSLGKLIILANNCPPLRKSEIETYAMLAKISVHHFHGNNVDLGTACGKYYRVCCLSILDPGDSDIIST 107          
BLAST of GO242683 vs. ExPASy Swiss-Prot
Match: RL30_RAT (60S ribosomal protein L30 OS=Rattus norvegicus GN=Rpl30 PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.331e-38
Identity = 73/98 (74.49%), Postives = 85/98 (86.73%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDTIKSLP 413
            ESIN+RL LVMKSGKY LGYK  L+ +R  K KL+IL+NNCP LRKSEIEYYAMLAK GVHHY+GNN++LGTACGKY+RV  L+IIDPGDSD I+S+P
Sbjct:   12 ESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMP 109          
BLAST of GO242683 vs. ExPASy Swiss-Prot
Match: RL30_OPHHA (60S ribosomal protein L30 OS=Ophiophagus hannah GN=RPL30 PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.331e-38
Identity = 73/98 (74.49%), Postives = 85/98 (86.73%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDTIKSLP 413
            ESIN+RL LVMKSGKY LGYK  L+ +R  K KL+IL+NNCP LRKSEIEYYAMLAK GVHHY+GNN++LGTACGKY+RV  L+IIDPGDSD I+S+P
Sbjct:   12 ESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMP 109          
The following BLAST results are available for this feature:
BLAST of GO242683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
RL30_LUPLU7.725e-5091.0960S ribosomal protein L30 OS=Lupinus luteus GN=RPL... [more]
RL30_EUPES8.541e-4989.2260S ribosomal protein L30 OS=Euphorbia esula GN=RP... [more]
RL302_ARATH4.239e-4888.1260S ribosomal protein L30-2 OS=Arabidopsis thalian... [more]
RL301_ARATH7.230e-4888.12Putative 60S ribosomal protein L30-1 OS=Arabidopsi... [more]
RL303_ARATH1.611e-4787.1360S ribosomal protein L30-3 OS=Arabidopsis thalian... [more]
RL30_MAIZE8.272e-4482.0060S ribosomal protein L30 OS=Zea mays GN=RPL30 PE=... [more]
RL30_ORYSJ1.560e-4284.3860S ribosomal protein L30 OS=Oryza sativa subsp. j... [more]
RL30_WHEAT1.907e-4080.2160S ribosomal protein L30 OS=Triticum aestivum PE=... [more]
RL30_RAT2.331e-3874.4960S ribosomal protein L30 OS=Rattus norvegicus GN=... [more]
RL30_OPHHA2.331e-3874.4960S ribosomal protein L30 OS=Ophiophagus hannah GN... [more]

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Properties
Property NameValue
Genbank description1331 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 1522 5, mRNA sequence.