GO242629

Overview
NameGO242629
Unique NameGO242629
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242629 vs. ExPASy Swiss-Prot
Match: RL13A_LUPLU (60S ribosomal protein L13a OS=Lupinus luteus GN=RPL13A PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.339e-17
Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = 2
Query:    2 ELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDILAPVKY 142
            ELEKKRKERSQV YERKKQLNKLR KAE+VA+EKLGSQLDILAPVKY
Sbjct:  159 ELEKKRKERSQVVYERKKQLNKLRVKAEQVAQEKLGSQLDILAPVKY 205          
BLAST of GO242629 vs. ExPASy Swiss-Prot
Match: R13A3_ARATH (60S ribosomal protein L13a-3 OS=Arabidopsis thaliana GN=RPL13AC PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.554e-16
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 2
Query:    2 ELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDILAPVKY 142
            ELE KRKERSQV YERKKQLNKLR KAEKVAEE+LGSQLD+LAPVKY
Sbjct:  160 ELETKRKERSQVMYERKKQLNKLRTKAEKVAEERLGSQLDVLAPVKY 206          
BLAST of GO242629 vs. ExPASy Swiss-Prot
Match: R13A1_ARATH (60S ribosomal protein L13a-1 OS=Arabidopsis thaliana GN=RPL13AA PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.461e-16
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 2
Query:    2 ELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDILAPVKY 142
            ELE KRKER+Q  YERKKQL+KLRAKAEKVAEEKLGSQLD+LAPVKY
Sbjct:  160 ELENKRKERAQAVYERKKQLSKLRAKAEKVAEEKLGSQLDVLAPVKY 206          
BLAST of GO242629 vs. ExPASy Swiss-Prot
Match: R13A4_ARATH (60S ribosomal protein L13a-4 OS=Arabidopsis thaliana GN=RPL13AD PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.710e-16
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 2
Query:    2 ELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDILAPVKY 142
            ELE KRKER+ V YERKKQLNKLR KAEKVAEEKLG+QLDILAPVKY
Sbjct:  160 ELETKRKERAHVVYERKKQLNKLRVKAEKVAEEKLGAQLDILAPVKY 206          
BLAST of GO242629 vs. ExPASy Swiss-Prot
Match: R13A2_ARATH (60S ribosomal protein L13a-2 OS=Arabidopsis thaliana GN=RPL13AB PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.998e-15
Identity = 40/47 (85.11%), Postives = 42/47 (89.36%), Query Frame = 2
Query:    2 ELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDILAPVKY 142
            ELE KRKERSQ  YERKKQL KLRAKAEKVAEEKLGSQLD+LA +KY
Sbjct:  160 ELEVKRKERSQALYERKKQLTKLRAKAEKVAEEKLGSQLDVLASIKY 206          
The following BLAST results are available for this feature:
BLAST of GO242629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RL13A_LUPLU5.339e-1791.4960S ribosomal protein L13a OS=Lupinus luteus GN=RP... [more]
R13A3_ARATH1.554e-1689.3660S ribosomal protein L13a-3 OS=Arabidopsis thalia... [more]
R13A1_ARATH3.461e-1687.2360S ribosomal protein L13a-1 OS=Arabidopsis thalia... [more]
R13A4_ARATH7.710e-1687.2360S ribosomal protein L13a-4 OS=Arabidopsis thalia... [more]
R13A2_ARATH4.998e-1585.1160S ribosomal protein L13a-2 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank description1277 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 1467 5, mRNA sequence.