GO242588

Overview
NameGO242588
Unique NameGO242588
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242588 vs. ExPASy Swiss-Prot
Match: PHG1A_DICDI (Putative phagocytic receptor 1a OS=Dictyostelium discoideum GN=phg1a PE=2 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 8.066e-85
Identity = 151/274 (55.11%), Postives = 192/274 (70.07%), Query Frame = 3
Query:    3 MMLVTMIFALLGFLSPSNRGGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSAXXXXXXXXXXXXXXXEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFW 824
            M L+TMIFA+LGFLSP+N GGL TA+++L+V   +FAGY S R++ +FKG  WK+    TA++ PGI+  IFF +N  + G KSS AVPFGT  ++I +WFGISVPLV++GS+   KKP  EDPV+TN+IPRQ+P+Q WYMNP  SIL+GGILPFGAVFIEL FILTS+W NQ                 T AEI+IV+CYFQLC+ED+ WWWRS+LT+GSS+                ITK +S +L F Y  I S AF  LTGTIGFY+C++
Sbjct:  357 MTLITMIFAVLGFLSPANIGGLATALIVLFVLSAMFAGYFSTRVFTIFKGRNWKKNTIYTALSMPGIIFGIFFFVNMFLRGAKSSAAVPFGTFASIIAMWFGISVPLVFLGSYFASKKPVPEDPVRTNQIPRQVPDQIWYMNPYLSILMGGILPFGAVFIELHFILTSLWDNQFYYIFGFLFIVLMILIVTSAEISIVMCYFQLCAEDHHWWWRSFLTAGSSSLYMFIYSVSFFRYLG-ITKFISSLLDFSYSFIMSLAFAALTGTIGFYSCYF 629          
BLAST of GO242588 vs. ExPASy Swiss-Prot
Match: TM9S2_RAT (Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 6.828e-84
Identity = 146/279 (52.33%), Postives = 187/279 (67.03%), Query Frame = 3
Query:    3 MMLVTMIFALLGFLSPSNRGGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSAXXXXXXXXXXXXXXXEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTADL 839
            M  VT+ FA LGFLSP+NRG LMT  ++LWV +G  AGY +AR YK F G +WK     T+   PGIV A FF++N ++WG+ SS A+PFGT+ A++ LWF ISVPL ++G++ GFKK AIE PV+TN+IPRQIPEQ++Y  P+  I++GGILPFG +FI+LFFIL SIW +Q                 TC+E TI+LCYF LC+EDY W WRS+LTSG +A               +IT   S ILYFGY +I    FF+ TGTIGF+ACFWF   +
Sbjct:  378 MTFVTLFFACLGFLSPANRGALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEHPVRTNQIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLVYAIHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKI 656          
BLAST of GO242588 vs. ExPASy Swiss-Prot
Match: TM9S2_PONAB (Transmembrane 9 superfamily member 2 OS=Pongo abelii GN=TM9SF2 PE=2 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 6.828e-84
Identity = 146/279 (52.33%), Postives = 187/279 (67.03%), Query Frame = 3
Query:    3 MMLVTMIFALLGFLSPSNRGGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSAXXXXXXXXXXXXXXXEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTADL 839
            M  VT+ FA LGFLSP+NRG LMT  ++LWV +G  AGY +AR YK F G +WK     T+   PGIV A FF++N ++WG+ SS A+PFGT+ A++ LWF ISVPL ++G++ GFKK AIE PV+TN+IPRQIPEQ++Y  P+  I++GGILPFG +FI+LFFIL SIW +Q                 TC+E TI+LCYF LC+EDY W WRS+LTSG +A               +IT   S ILYFGY +I    FF+ TGTIGF+ACFWF   +
Sbjct:  378 MTFVTLFFACLGFLSPANRGALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEHPVRTNQIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKI 656          
BLAST of GO242588 vs. ExPASy Swiss-Prot
Match: TM9S2_MOUSE (Transmembrane 9 superfamily member 2 OS=Mus musculus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 6.828e-84
Identity = 146/279 (52.33%), Postives = 187/279 (67.03%), Query Frame = 3
Query:    3 MMLVTMIFALLGFLSPSNRGGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSAXXXXXXXXXXXXXXXEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTADL 839
            M  VT+ FA LGFLSP+NRG LMT  ++LWV +G  AGY +AR YK F G +WK     T+   PGIV A FF++N ++WG+ SS A+PFGT+ A++ LWF ISVPL ++G++ GFKK AIE PV+TN+IPRQIPEQ++Y  P+  I++GGILPFG +FI+LFFIL SIW +Q                 TC+E TI+LCYF LC+EDY W WRS+LTSG +A               +IT   S ILYFGY +I    FF+ TGTIGF+ACFWF   +
Sbjct:  377 MTFVTLFFACLGFLSPANRGALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEHPVRTNQIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAIHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKI 655          
BLAST of GO242588 vs. ExPASy Swiss-Prot
Match: TM9S2_HUMAN (Transmembrane 9 superfamily member 2 OS=Homo sapiens GN=TM9SF2 PE=1 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 6.828e-84
Identity = 146/279 (52.33%), Postives = 187/279 (67.03%), Query Frame = 3
Query:    3 MMLVTMIFALLGFLSPSNRGGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSAXXXXXXXXXXXXXXXEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTADL 839
            M  VT+ FA LGFLSP+NRG LMT  ++LWV +G  AGY +AR YK F G +WK     T+   PGIV A FF++N ++WG+ SS A+PFGT+ A++ LWF ISVPL ++G++ GFKK AIE PV+TN+IPRQIPEQ++Y  P+  I++GGILPFG +FI+LFFIL SIW +Q                 TC+E TI+LCYF LC+EDY W WRS+LTSG +A               +IT   S ILYFGY +I    FF+ TGTIGF+ACFWF   +
Sbjct:  378 MTFVTLFFACLGFLSPANRGALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEHPVRTNQIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKI 656          
BLAST of GO242588 vs. ExPASy Swiss-Prot
Match: TM9S4_RAT (Transmembrane 9 superfamily member 4 OS=Rattus norvegicus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.860e-81
Identity = 140/275 (50.91%), Postives = 188/275 (68.36%), Query Frame = 3
Query:    3 MMLVTMIFALLGFLSPSNRGGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSAXXXXXXXXXXXXXXXEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWF 827
            M+L+ +  A+LG LSPS+RG LMT    L++FMG+F G+++ RLY+  KG  WK+ AF TA  +PG+V  I FVLN  IWG+ SSGAVPF TM AL+ +WFGIS+PLVY+G + GF+K   ++PV+TN+IPRQIPEQ WYMN    IL+ GILPFGA+FIELFFI ++IW NQ                 +C++I+IV+ YFQLC+EDY+WWWR++L SG SA               +I + +  +LYFGY  +   +F++LTGTIGFYA + F
Sbjct:  358 MILIVIFVAMLGMLSPSSRGALMTTACFLFMFMGVFGGFSAGRLYRTLKGHRWKKGAFCTATLYPGVVFGICFVLNCFIWGKHSSGAVPFPTMVALLCMWFGISLPLVYLGYYFGFRKQPYDNPVRTNQIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTTLMVLSFWLLTGTIGFYAAYMF 632          
BLAST of GO242588 vs. ExPASy Swiss-Prot
Match: TM9S4_PONAB (Transmembrane 9 superfamily member 4 OS=Pongo abelii GN=TM9SF4 PE=2 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.860e-81
Identity = 140/275 (50.91%), Postives = 188/275 (68.36%), Query Frame = 3
Query:    3 MMLVTMIFALLGFLSPSNRGGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSAXXXXXXXXXXXXXXXEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWF 827
            M+L+ +  A+LG LSPS+RG LMT    L++FMG+F G+++ RLY+  KG  WK+ AF TA  +PG+V  I FVLN  IWG+ SSGAVPF TM AL+ +WFGIS+PLVY+G + GF+K   ++PV+TN+IPRQIPEQ WYMN    IL+ GILPFGA+FIELFFI ++IW NQ                 +C++I+IV+ YFQLC+EDY+WWWR++L SG SA               +I + +  +LYFGY  +   +F++LTGTIGFYA + F
Sbjct:  357 MILIVIFVAMLGMLSPSSRGALMTTACFLFMFMGVFGGFSAGRLYRTLKGHRWKKGAFCTATLYPGVVFGICFVLNCFIWGKHSSGAVPFPTMVALLCMWFGISLPLVYLGYYFGFRKQPYDNPVRTNQIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAYMF 631          
BLAST of GO242588 vs. ExPASy Swiss-Prot
Match: TM9S4_MOUSE (Transmembrane 9 superfamily member 4 OS=Mus musculus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.860e-81
Identity = 140/275 (50.91%), Postives = 188/275 (68.36%), Query Frame = 3
Query:    3 MMLVTMIFALLGFLSPSNRGGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSAXXXXXXXXXXXXXXXEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWF 827
            M+L+ +  A+LG LSPS+RG LMT    L++FMG+F G+++ RLY+  KG  WK+ AF TA  +PG+V  I FVLN  IWG+ SSGAVPF TM AL+ +WFGIS+PLVY+G + GF+K   ++PV+TN+IPRQIPEQ WYMN    IL+ GILPFGA+FIELFFI ++IW NQ                 +C++I+IV+ YFQLC+EDY+WWWR++L SG SA               +I + +  +LYFGY  +   +F++LTGTIGFYA + F
Sbjct:  358 MILIVIFVAMLGMLSPSSRGALMTTACFLFMFMGVFGGFSAGRLYRTLKGHRWKKGAFCTATLYPGVVFGICFVLNCFIWGKHSSGAVPFPTMVALLCMWFGISLPLVYLGYYFGFRKQPYDNPVRTNQIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTTLMVLSFWLLTGTIGFYAAYMF 632          
BLAST of GO242588 vs. ExPASy Swiss-Prot
Match: TM9S4_HUMAN (Transmembrane 9 superfamily member 4 OS=Homo sapiens GN=TM9SF4 PE=1 SV=2)

HSP 1 Score: 302.753 bits (774), Expect = 1.860e-81
Identity = 140/275 (50.91%), Postives = 188/275 (68.36%), Query Frame = 3
Query:    3 MMLVTMIFALLGFLSPSNRGGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSAXXXXXXXXXXXXXXXEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWF 827
            M+L+ +  A+LG LSPS+RG LMT    L++FMG+F G+++ RLY+  KG  WK+ AF TA  +PG+V  I FVLN  IWG+ SSGAVPF TM AL+ +WFGIS+PLVY+G + GF+K   ++PV+TN+IPRQIPEQ WYMN    IL+ GILPFGA+FIELFFI ++IW NQ                 +C++I+IV+ YFQLC+EDY+WWWR++L SG SA               +I + +  +LYFGY  +   +F++LTGTIGFYA + F
Sbjct:  357 MILIVIFVAMLGMLSPSSRGALMTTACFLFMFMGVFGGFSAGRLYRTLKGHRWKKGAFCTATLYPGVVFGICFVLNCFIWGKHSSGAVPFPTMVALLCMWFGISLPLVYLGYYFGFRKQPYDNPVRTNQIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAYMF 631          
BLAST of GO242588 vs. ExPASy Swiss-Prot
Match: TM9S4_BOVIN (Transmembrane 9 superfamily member 4 OS=Bos taurus GN=TM9SF4 PE=2 SV=2)

HSP 1 Score: 302.753 bits (774), Expect = 1.860e-81
Identity = 140/275 (50.91%), Postives = 188/275 (68.36%), Query Frame = 3
Query:    3 MMLVTMIFALLGFLSPSNRGGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSAXXXXXXXXXXXXXXXEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWF 827
            M+L+ +  A+LG LSPS+RG LMT    L++FMG+F G+++ RLY+  KG  WK+ AF TA  +PG+V  I FVLN  IWG+ SSGAVPF TM AL+ +WFGIS+PLVY+G + GF+K   ++PV+TN+IPRQIPEQ WYMN    IL+ GILPFGA+FIELFFI ++IW NQ                 +C++I+IV+ YFQLC+EDY+WWWR++L SG SA               +I + +  +LYFGY  +   +F++LTGTIGFYA + F
Sbjct:  357 MILIVIFVAMLGMLSPSSRGALMTTACFLFMFMGVFGGFSAGRLYRTLKGHRWKKGAFCTATLYPGVVFGICFVLNCFIWGKHSSGAVPFPTMVALLCMWFGISLPLVYLGYYFGFRKQPYDNPVRTNQIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAYMF 631          
The following BLAST results are available for this feature:
BLAST of GO242588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PHG1A_DICDI8.066e-8555.11Putative phagocytic receptor 1a OS=Dictyostelium d... [more]
TM9S2_RAT6.828e-8452.33Transmembrane 9 superfamily member 2 OS=Rattus nor... [more]
TM9S2_PONAB6.828e-8452.33Transmembrane 9 superfamily member 2 OS=Pongo abel... [more]
TM9S2_MOUSE6.828e-8452.33Transmembrane 9 superfamily member 2 OS=Mus muscul... [more]
TM9S2_HUMAN6.828e-8452.33Transmembrane 9 superfamily member 2 OS=Homo sapie... [more]
TM9S4_RAT1.860e-8150.91Transmembrane 9 superfamily member 4 OS=Rattus nor... [more]
TM9S4_PONAB1.860e-8150.91Transmembrane 9 superfamily member 4 OS=Pongo abel... [more]
TM9S4_MOUSE1.860e-8150.91Transmembrane 9 superfamily member 4 OS=Mus muscul... [more]
TM9S4_HUMAN1.860e-8150.91Transmembrane 9 superfamily member 4 OS=Homo sapie... [more]
TM9S4_BOVIN1.860e-8150.91Transmembrane 9 superfamily member 4 OS=Bos taurus... [more]

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Properties
Property NameValue
Genbank description1236 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 1413 5, mRNA sequence.