GO242506

Overview
NameGO242506
Unique NameGO242506
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242506 vs. ExPASy Swiss-Prot
Match: PP314_ARATH (Pentatricopeptide repeat-containing protein At4g16390, chloroplastic OS=Arabidopsis thaliana GN=P67 PE=1 SV=2)

HSP 1 Score: 300.056 bits (767), Expect = 1.199e-80
Identity = 148/196 (75.51%), Postives = 170/196 (86.73%), Query Frame = 2
Query:    5 EELGKLVECVEKSNSKLGYVVKLLLEEQDIE-GDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSK-ALESGEEFPPLLGINTGHGKHKYSGKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESRSSLVSVPA 586
            EE+GKL+ CVEK+  KLG VVK+L+EEQ+ E G FKKEA+EL +SI  DVKKAY NCLIDLCVNLN LE AC++L+LGL  ++YT +QS+S TQWSLHLKSLSLGAALTALH+W+NDLS+ ALESGEEFPPLLGINTGHGKHKYS KGLA+VFESHLKELNAPFH++PDKVGWFLTT  AAK+WLESR S   V A
Sbjct:  493 EEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDVKKAYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALTALHVWMNDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDKVGWFLTTSVAAKAWLESRRSAGGVSA 688          
BLAST of GO242506 vs. ExPASy Swiss-Prot
Match: PP420_ARATH (Pentatricopeptide repeat-containing protein At5g46580, chloroplastic OS=Arabidopsis thaliana GN=At5g46580 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.535e-30
Identity = 71/186 (38.17%), Postives = 114/186 (61.29%), Query Frame = 2
Query:    5 EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSGKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESR 562
            E+  K++ C+E++N KL   V L+++E+      K+E   + N+   + ++ +CNCLID+C   N  E A +LL LG    +Y  + +++  +WSL ++SLS+GAA TAL  W+  L+  ++  EE P L    TG G H++S +GLA+ F  HL++L+APF  S D+ G F+ T+    SWLES+
Sbjct:  519 EDAEKVMACLERANKKLVTFVNLIVDEKTEYETVKEEFKLVINATQVEARRPFCNCLIDICRGNNRHERAHELLYLGTLFGLYPGLHNKTIKEWSLDVRSLSVGAAETALEEWMRTLANIIKRQEELPELFLAQTGTGTHRFS-QGLANSFALHLQQLSAPFRQS-DRPGIFVATKEDLVSWLESK 702          
The following BLAST results are available for this feature:
BLAST of GO242506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PP314_ARATH1.199e-8075.51Pentatricopeptide repeat-containing protein At4g16... [more]
PP420_ARATH2.535e-3038.17Pentatricopeptide repeat-containing protein At5g46... [more]
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Properties
Property NameValue
Genbank description1154 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 1326 5, mRNA sequence.